HHsearch alignment for GI: 254780947 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=0 Score=982.33 Aligned_cols=393 Identities=37% Similarity=0.646 Sum_probs=375.2
Q ss_pred HHHHHCCCCCCCCH-HHHHHHHH-HCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 88740156778784-67898998-48888874489999999876059885414431665432489999999875112754
Q gi|254780947|r 599 KRAIHSVPPLMVSQ-DLYSQFIK-RFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQ 676 (1187)
Q Consensus 599 ~R~~~~g~~f~~d~-~~~~eFe~-~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQ 676 (1187)
T Consensus 279 ~~~~~~a~~~~~~~~~~l~k~~~~~LPF~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~GYQ 358 (721)
T TIGR00643 279 EKQQFSAPPLNVSENELLEKFLAKSLPFELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESGYQ 358 (721)
T ss_pred HHHCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 54305665110020579999998528887767789999999986147875322211010663899999999999846980
Q ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECH
Q ss_conf 99982436655589999998606789833541066630256777753122576089852065427852023656997222
Q gi|254780947|r 677 VAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEE 756 (1187)
Q Consensus 677 vavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEE 756 (1187)
T Consensus 359 ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef~~L~lVIiDEQ 438 (721)
T TIGR00643 359 VALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEFKRLGLVIIDEQ 438 (721)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99917768999999999999623548578886156678789999999863952057331355452144314774899323
Q ss_pred HHHHHHHHHHHHHCCC-------CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHH-----HHH
Q ss_conf 3300888998863167-------8848999535340889999712225412201578877537999857978-----989
Q gi|254780947|r 757 QHFGVKHKEALKETHT-------GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPL-----VVR 824 (1187)
Q Consensus 757 qrFGV~~Ke~lk~~~~-------~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~-----~i~ 824 (1187)
T Consensus 439 HRFGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPIPRTLALt~yGDld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~ 518 (721)
T TIGR00643 439 HRFGVEQRKKLREKGQEGSMIGFAPHVLVMTATPIPRTLALTVYGDLDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVY 518 (721)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHH
T ss_conf 35607899999986220688677777646637881478997765000033431685459338998884278877568999
Q ss_pred HHHHHHHHHCCEEEEEECCCCCHHHH---------HHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 99998987188599982644692889---------99998616-546488861346747899999999638875797610
Q gi|254780947|r 825 ETLMREYYRGGQSFYVCPRLSDLEKC---------YTFLQSEV-PELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTS 894 (1187)
Q Consensus 825 ~ai~rEl~RgGQvf~v~nrv~~i~~~---------~~~l~~l~-p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~Tt 894 (1187)
T Consensus 519 ~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsTT 598 (721)
T TIGR00643 519 EFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVSTT 598 (721)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999983289089996440320047168999999999888612210011330689847899999985215836999976
Q ss_pred CEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEEC--CCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 200363322332667625023588604553221035676736999966--888889889999999997255652489999
Q gi|254780947|r 895 IVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLP--ENRPLTAAAQKRLRILQSLNTLGAGFQLAS 972 (1187)
Q Consensus 895 IiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~--~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~ 972 (1187)
T Consensus 599 VIEVGVDVPnAtvMVIe~AeRFGLSQLHQLRGRVGRG~~~SyC~L~~kdei~~p~~~~~~~RL~~~~~~~D---GF~iAE 675 (721)
T TIGR00643 599 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKDEIKNPKSESAKKRLRVMAETLD---GFVIAE 675 (721)
T ss_pred EEEEEEECCCCCEEEEECCCHHHHHHHHHHCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHH
T ss_conf 89998617977278886655103688876350012689750799812532578886468999999851556---067788
Q ss_pred HHHHHCCCCCCCC---CCCCCCHHH
Q ss_conf 9985116300046---111553898
Q gi|254780947|r 973 YDLDIRGTGNLLG---EEQSGHIRE 994 (1187)
Q Consensus 973 ~DleiRGaG~llG---~~QsG~i~~ 994 (1187)
T Consensus 676 ~DL~lRGPGd~lGtk~~~QSG~~~~ 700 (721)
T TIGR00643 676 EDLKLRGPGDLLGTKGTKQSGKLPE 700 (721)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 7553258824235888402155667