HHsearch alignment for GI: 254780947 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.11 E-value=4e-09 Score=89.07 Aligned_cols=274 Identities=23% Similarity=0.320 Sum_probs=189.4
Q ss_pred CCCCHHHHHHHHHHH---HHCCCC--EEEEEECHHHHHHHHHHHHHH----HHCCCCCCEEEEC--CCCCCHHH------
Q ss_conf 543248999999987---511275--499982436655589999998----6067898335410--66630256------
Q gi|254780947|r 655 VGFGKTEIALRAAFI---AVMNGL--QVAVIAPTTLLVRQHFRLFSE----RFQGFSVRIASIS--RFVQTKEA------ 717 (1187)
Q Consensus 655 VGfGKTEVA~RAafk---av~~gk--QvavlvPTTiLa~QH~~tf~~----Rf~~~pv~i~~ls--Rf~~~~e~------ 717 (1187)
T Consensus 8 TG~GKTe~aL~~A~~sah~~k~~~~~~~I~alP~r~~~na~~~r~~~sash~Fg~-P~~~~~~~ssrfnh~~~~ik~~~~ 86 (424)
T TIGR01587 8 TGYGKTEAALLWALKSAHLIKKQKADKVIFALPTRVTINAMYRRLKESASHLFGS-PELVLLLHSSRFNHLASSIKLRKI 86 (424)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8998789999999863666422444010122026888999999999867754178-543233455226789999998776
Q ss_pred ---------------------HHHHHHHCCCCCEEEEECHHH-HCCCCCCCC-------CCEEEEECHHHHHHHHHHH-H
Q ss_conf ---------------------777753122576089852065-427852023-------6569972223300888998-8
Q gi|254780947|r 718 ---------------------ALHKKSITEGQVDIVIGTHAL-LNPKITFAN-------LGLIIIDEEQHFGVKHKEA-L 767 (1187)
Q Consensus 718 ---------------------~~i~~~l~~G~idiviGTH~l-l~~~v~f~~-------LgLliiDEEqrFGV~~Ke~-l 767 (1187)
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~DE~h~y~~~~~~~~~ 166 (424)
T TIGR01587 87 KEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIFDEVHAYEEYTLALTI 166 (424)
T ss_pred HCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30478279999998522421210131788534122000000553445205688887777676562536777642555569
Q ss_pred ------HHCCCCCCEEEEECCCCCHHHHHHHH----C---CCCCCEEECCC-------------------C---CCCCEE
Q ss_conf ------63167884899953534088999971----2---22541220157-------------------8---877537
Q gi|254780947|r 768 ------KETHTGVHVLTLSATPIPRTLQLAIT----G---VRELSLISMPP-------------------I---NRIACR 812 (1187)
Q Consensus 768 ------k~~~~~vdvLtlsATPIPRTL~msl~----g---~rd~S~i~tpP-------------------~---~R~~v~ 812 (1187)
T Consensus 167 l~~L~~~~~~~~~~~~lMsAT-lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GvnGaqrfdllahPe~~~~r~~~~~~~ 245 (424)
T TIGR01587 167 LAALEVLKIDNDVKILLMSAT-LPRELKKFLKEYLEKIEYVEENELLDLKEVEGVNGAQRFDLLAHPEFKEKRFENHRIS 245 (424)
T ss_pred HHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 999999998738988998405-6757899999873104763333557866435464202333321720210022157642
Q ss_pred EEEEE--CCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCHH---HHH---HHHHHHH
Q ss_conf 99985--797898999998987188599982644692889999986165464-88861346747---899---9999996
Q gi|254780947|r 813 TSISI--FDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELK-IAMAHGQMSPK---NLE---DKMNAFY 883 (1187)
Q Consensus 813 T~v~~--~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~-i~vaHGqm~~~---~le---~~m~~F~ 883 (1187)
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~ 325 (424)
T TIGR01587 246 LIEKDKVGEISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELK 325 (424)
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 13432033134666677874157786699985438999999998512652002124404477003667767999999851
Q ss_pred C-----CCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf 3-----88757976102003633223326676250235886045532210356767
Q gi|254780947|r 884 E-----GQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIA 934 (1187)
Q Consensus 884 ~-----~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ 934 (1187)
T Consensus 326 ~S~~~~~~~~v~V~TQv~E~SlD~-s~D~~iTe~a---P~d~LiQR~GR~~R~~~~ 377 (424)
T TIGR01587 326 KSAWKDNEKFVIVATQVIEVSLDI-SVDVMITELA---PIDSLIQRLGRLNRYGRK 377 (424)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEC-CCCHHHHHCC---CHHHHHHHHHHHCCCCCC
T ss_conf 013544577069987878886420-4441343115---012335542111011356