HHsearch alignment for GI: 254780947 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.53 E-value=3.6e-12 Score=112.48 Aligned_cols=282 Identities=20% Similarity=0.240 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCC----CCC
Q ss_conf 89999999876059885414431-6654324899999998751127549998243665558999999860678----983
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLIC-GDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGF----SVR 704 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiC-GDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~----pv~ 704 (1187)
T Consensus 2 q~~~~~~~~~~-----~~~~ivitAPTgsGKT~Aa~lp~l---~~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 2 QVATFEALQSK-----DADIIFNTAPTGAGKTLAWLTPLL---HGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred HHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 68999999768-----998699989998569999999997---3898799977789999999999999998744234644
Q ss_pred EEEECCCCCC-----------HHHHH-----HHHHHCCCCCEEEEEC----HHHH-----CCC----CCCCCCCEEEEEC
Q ss_conf 3541066630-----------25677-----7753122576089852----0654-----278----5202365699722
Q gi|254780947|r 705 IASISRFVQT-----------KEAAL-----HKKSITEGQVDIVIGT----HALL-----NPK----ITFANLGLIIIDE 755 (1187)
Q Consensus 705 i~~lsRf~~~-----------~e~~~-----i~~~l~~G~idiviGT----H~ll-----~~~----v~f~~LgLliiDE 755 (1187)
T Consensus 74 ~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEE
T ss_conf 02114643233444655553434454102566543025899099928899999976201365103999985167477562
Q ss_pred HHHHHHHH----H---HH---HHHCCCCCCEEEEECCCCCHHH-HHHHHCC--CCCCEEE---------------CCCCC
Q ss_conf 23300888----9---98---8631678848999535340889-9997122--2541220---------------15788
Q gi|254780947|r 756 EQHFGVKH----K---EA---LKETHTGVHVLTLSATPIPRTL-QLAITGV--RELSLIS---------------MPPIN 807 (1187)
Q Consensus 756 EqrFGV~~----K---e~---lk~~~~~vdvLtlsATPIPRTL-~msl~g~--rd~S~i~---------------tpP~~ 807 (1187)
T Consensus 154 iH~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred EHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 00006762089999999999986336898089982799803578986323457643456544445678743334554345
Q ss_pred CCCEEEEEE-E------CCHH----HHHHHHHH-HHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 775379998-5------7978----98999998-9871885999826446928899999861654648886134674789
Q gi|254780947|r 808 RIACRTSIS-I------FDPL----VVRETLMR-EYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNL 875 (1187)
Q Consensus 808 R~~v~T~v~-~------~~~~----~i~~ai~r-El~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~l 875 (1187)
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r 313 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHH
T ss_conf 54446750112346630446799999999999999852671799955899999999999863364114554255618898
Q ss_pred HHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCC
Q ss_conf 999999963887579761020036332233266762502358860455322103
Q gi|254780947|r 876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVG 929 (1187)
Q Consensus 876 e~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVG 929 (1187)
T Consensus 314 ek------~~~~~~vVaTsaLElGIDi-~~d~~i~~---~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 314 ER------AMQFDILLGTSTVDVGVDF-KRDWLIFS---ARDAAAFWQRLGRLG 357 (357)
T ss_pred HC------CCCCCEEEECCCCEEEEEC-CCCEEEEC---CCCHHHHHHCCCCCC
T ss_conf 50------4899999987701035611-78989958---987888997266799