HHsearch alignment for GI: 254780947 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.53  E-value=3.6e-12  Score=112.48  Aligned_cols=282  Identities=20%  Similarity=0.240  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCC----CCC
Q ss_conf             89999999876059885414431-6654324899999998751127549998243665558999999860678----983
Q gi|254780947|r  630 QEKAIDAVIQDLSSGRLMDRLIC-GDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGF----SVR  704 (1187)
Q Consensus       630 Q~~AI~eV~~Dmes~~PMDRLiC-GDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~----pv~  704 (1187)
T Consensus         2 q~~~~~~~~~~-----~~~~ivitAPTgsGKT~Aa~lp~l---~~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~   73 (357)
T TIGR03158         2 QVATFEALQSK-----DADIIFNTAPTGAGKTLAWLTPLL---HGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN   73 (357)
T ss_pred             HHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             68999999768-----998699989998569999999997---3898799977789999999999999998744234644


Q ss_pred             EEEECCCCCC-----------HHHHH-----HHHHHCCCCCEEEEEC----HHHH-----CCC----CCCCCCCEEEEEC
Q ss_conf             3541066630-----------25677-----7753122576089852----0654-----278----5202365699722
Q gi|254780947|r  705 IASISRFVQT-----------KEAAL-----HKKSITEGQVDIVIGT----HALL-----NPK----ITFANLGLIIIDE  755 (1187)
Q Consensus       705 i~~lsRf~~~-----------~e~~~-----i~~~l~~G~idiviGT----H~ll-----~~~----v~f~~LgLliiDE  755 (1187)
T Consensus        74 ~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDE  153 (357)
T TIGR03158        74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE  153 (357)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEE
T ss_conf             02114643233444655553434454102566543025899099928899999976201365103999985167477562


Q ss_pred             HHHHHHHH----H---HH---HHHCCCCCCEEEEECCCCCHHH-HHHHHCC--CCCCEEE---------------CCCCC
Q ss_conf             23300888----9---98---8631678848999535340889-9997122--2541220---------------15788
Q gi|254780947|r  756 EQHFGVKH----K---EA---LKETHTGVHVLTLSATPIPRTL-QLAITGV--RELSLIS---------------MPPIN  807 (1187)
Q Consensus       756 EqrFGV~~----K---e~---lk~~~~~vdvLtlsATPIPRTL-~msl~g~--rd~S~i~---------------tpP~~  807 (1187)
T Consensus       154 iH~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (357)
T TIGR03158       154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS  233 (357)
T ss_pred             EHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             00006762089999999999986336898089982799803578986323457643456544445678743334554345


Q ss_pred             CCCEEEEEE-E------CCHH----HHHHHHHH-HHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf             775379998-5------7978----98999998-9871885999826446928899999861654648886134674789
Q gi|254780947|r  808 RIACRTSIS-I------FDPL----VVRETLMR-EYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNL  875 (1187)
Q Consensus       808 R~~v~T~v~-~------~~~~----~i~~ai~r-El~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~l  875 (1187)
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r  313 (357)
T TIGR03158       234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR  313 (357)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHH
T ss_conf             54446750112346630446799999999999999852671799955899999999999863364114554255618898


Q ss_pred             HHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCC
Q ss_conf             999999963887579761020036332233266762502358860455322103
Q gi|254780947|r  876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVG  929 (1187)
Q Consensus       876 e~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVG  929 (1187)
T Consensus       314 ek------~~~~~~vVaTsaLElGIDi-~~d~~i~~---~~~v~sl~QR~GRaG  357 (357)
T TIGR03158       314 ER------AMQFDILLGTSTVDVGVDF-KRDWLIFS---ARDAAAFWQRLGRLG  357 (357)
T ss_pred             HC------CCCCCEEEECCCCEEEEEC-CCCEEEEC---CCCHHHHHHCCCCCC
T ss_conf             50------4899999987701035611-78989958---987888997266799