HHsearch alignment for GI: 254780947 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.16 E-value=0.19 Score=29.96 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=63.6
Q ss_pred EEECCCCCCHHHHHHHHH----HHCCCCEEEEECCHHHHHHHHHHHHHHCCC-------C--EEEECCCCCCCCHHCCCC
Q ss_conf 898037652279999999----862998999929989999999999985799-------8--099857224670100489
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEI----ARLGLSLVYICSDERILINLKKILTLVVPD-------I--RVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l----~~~~rpilvI~~d~~~A~~l~~dL~~f~~~-------~--~V~~FP~~E~LPYd~~sp 84 (1187)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~e-E~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~-- 78 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS-- 78 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHH--
T ss_conf 15876899999999999999998769978999950-799999999998399858986458568996262002203332--
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCC
Q ss_conf 9899999999999984124468876999566785236998668851548994097419999999999828845545217
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYK 163 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~ 163 (1187)
T Consensus 79 ~~~~l---~~~i~~~i~--~~~~~~vVIDSi~~l~~~~~~--~-----------~~~~~~~l~~~l~~~~~t~ll~~e~ 139 (187)
T cd01124 79 LRLEL---IQRLKDAIE--EFKAKRVVIDSVSGLLLMEQS--T-----------ARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred HHHHH---HHHHHHHHH--HHCCCEEEECCHHHHHHCCHH--H-----------HHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 36789---999999999--849989999486887525666--6-----------8999999999999769968999974