Query gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1187
No_of_seqs 329 out of 3330
Neff 7.2
Searched_HMMs 39220
Date Mon May 30 04:46:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780947.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10689 transcription-repair 100.0 0 0 3125.7 116.6 1125 11-1168 10-1146(1148)
2 COG1197 Mfd Transcription-repa 100.0 0 0 3048.0 106.4 1119 15-1168 9-1137(1139)
3 TIGR00580 mfd transcription-re 100.0 0 0 2826.4 68.9 934 150-1101 1-997 (997)
4 PRK10917 ATP-dependent DNA hel 100.0 0 0 1094.0 44.2 423 585-1012 214-650 (677)
5 TIGR00643 recG ATP-dependent D 100.0 0 0 982.3 36.0 393 599-994 279-700 (721)
6 COG1200 RecG RecG-like helicas 100.0 0 0 920.8 37.5 413 594-1011 231-655 (677)
7 TIGR00631 uvrb excinuclease AB 100.0 0 0 492.8 31.2 547 5-593 20-651 (667)
8 PRK05298 excinuclease ABC subu 100.0 0 0 427.4 40.1 456 5-480 24-528 (657)
9 COG0556 UvrB Helicase subunit 100.0 0 0 412.1 35.7 455 6-480 24-528 (663)
10 KOG0344 consensus 100.0 1.3E-37 3.4E-42 308.5 5.8 389 497-986 131-530 (593)
11 PRK05580 primosome assembly pr 100.0 1.2E-30 3.1E-35 254.8 31.1 340 621-979 164-597 (699)
12 COG1198 PriA Primosomal protei 100.0 7.6E-26 1.9E-30 217.9 28.0 327 608-941 181-600 (730)
13 PRK11192 ATP-dependent RNA hel 99.9 1.5E-21 3.7E-26 184.9 34.2 338 607-963 7-367 (417)
14 PRK10590 ATP-dependent RNA hel 99.9 9E-20 2.3E-24 171.1 34.4 336 608-963 6-365 (457)
15 pfam02559 CarD_TRCF CarD-like/ 99.9 1.2E-24 3.1E-29 208.6 9.0 97 502-598 1-98 (98)
16 PRK11776 ATP-dependent RNA hel 99.9 4.6E-19 1.2E-23 165.6 34.3 336 607-963 8-362 (459)
17 PRK04537 ATP-dependent RNA hel 99.9 1.4E-18 3.6E-23 161.9 34.6 334 608-961 14-375 (574)
18 PRK11634 ATP-dependent RNA hel 99.9 1.6E-18 4E-23 161.5 33.7 374 608-1007 11-410 (629)
19 pfam03461 TRCF TRCF domain. 99.9 1.8E-22 4.5E-27 192.0 13.2 101 1027-1127 1-101 (101)
20 PRK04837 ATP-dependent RNA hel 99.9 2.2E-18 5.6E-23 160.4 34.0 336 607-963 13-376 (423)
21 COG0513 SrmB Superfamily II DN 99.9 2.3E-18 5.8E-23 160.3 32.8 337 607-961 33-392 (513)
22 PRK01297 ATP-dependent RNA hel 99.9 1E-17 2.6E-22 155.2 34.7 337 605-961 86-450 (472)
23 PTZ00110 helicase; Provisional 99.9 2E-17 5.1E-22 153.0 34.4 378 568-963 126-552 (602)
24 PRK13766 Hef nuclease; Provisi 99.9 9.1E-20 2.3E-24 171.1 22.0 294 630-944 20-478 (764)
25 PRK01172 ski2-like helicase; P 99.9 1E-17 2.5E-22 155.3 28.5 379 608-1015 6-457 (674)
26 COG1061 SSL2 DNA or RNA helica 99.9 1.3E-18 3.2E-23 162.3 23.7 315 620-956 31-406 (442)
27 TIGR00595 priA primosomal prot 99.8 2E-18 5.1E-23 160.7 21.5 288 650-942 1-393 (524)
28 PRK11057 ATP-dependent DNA hel 99.8 9.5E-17 2.4E-21 147.8 29.2 314 612-944 11-343 (607)
29 PRK02362 ski2-like helicase; P 99.8 3.6E-17 9.2E-22 151.0 26.0 317 609-945 7-398 (736)
30 PRK13767 ATP-dependent helicas 99.8 1.4E-16 3.6E-21 146.5 27.4 312 616-942 24-396 (878)
31 PRK00254 ski2-like helicase; P 99.8 3.3E-15 8.5E-20 135.9 28.3 315 610-944 8-387 (717)
32 COG4098 comFA Superfamily II D 99.8 3E-16 7.6E-21 144.0 22.5 316 624-965 96-434 (441)
33 pfam00270 DEAD DEAD/DEAH box h 99.8 1.7E-17 4.3E-22 153.6 16.1 152 627-789 1-165 (167)
34 COG1111 MPH1 ERCC4-like helica 99.8 2.5E-15 6.5E-20 136.8 24.2 289 648-944 31-481 (542)
35 COG1203 CRISPR-associated heli 99.7 8E-14 2E-18 125.2 26.8 310 627-945 197-551 (733)
36 smart00487 DEXDc DEAD-like hel 99.7 3.3E-16 8.5E-21 143.6 14.5 165 620-793 3-183 (201)
37 cd00079 HELICc Helicase superf 99.7 4.1E-16 1.1E-20 142.9 12.6 128 810-940 1-131 (131)
38 cd00046 DEXDc DEAD-like helica 99.6 1.3E-14 3.3E-19 131.3 14.0 131 648-783 2-144 (144)
39 KOG0354 consensus 99.6 6.4E-14 1.6E-18 126.0 17.1 81 859-942 443-527 (746)
40 COG1204 Superfamily II helicas 99.6 1.7E-12 4.5E-17 114.9 23.8 320 612-948 17-412 (766)
41 COG1202 Superfamily II helicas 99.6 1.2E-13 3.2E-18 123.8 17.6 312 624-948 215-557 (830)
42 COG0514 RecQ Superfamily II DN 99.6 1.3E-11 3.3E-16 108.2 25.3 311 618-945 9-338 (590)
43 KOG0331 consensus 99.6 2.5E-11 6.3E-16 106.1 25.9 347 625-990 113-490 (519)
44 COG1201 Lhr Lhr-like helicases 99.5 2.1E-10 5.4E-15 98.9 27.4 318 611-944 9-361 (814)
45 TIGR03158 cas3_cyano CRISPR-as 99.5 3.6E-12 9.3E-17 112.5 18.3 282 630-929 2-357 (357)
46 TIGR01054 rgy reverse gyrase; 99.5 1.1E-11 2.9E-16 108.7 18.3 244 655-948 108-451 (1843)
47 KOG0350 consensus 99.4 4.5E-10 1.1E-14 96.4 23.4 312 628-944 162-540 (620)
48 KOG0952 consensus 99.4 2.6E-10 6.5E-15 98.3 20.8 310 647-974 127-516 (1230)
49 COG1205 Distinct helicase fami 99.4 8.6E-09 2.2E-13 86.5 27.8 325 610-944 55-422 (851)
50 PRK11664 ATP-dependent RNA hel 99.4 9.4E-09 2.4E-13 86.2 27.2 416 635-1097 11-509 (812)
51 KOG0345 consensus 99.4 1.1E-08 2.7E-13 85.8 27.4 315 612-944 14-364 (567)
52 PRK09694 hypothetical protein; 99.4 1.1E-09 2.8E-14 93.4 22.2 341 573-943 251-683 (878)
53 KOG0330 consensus 99.4 5.1E-09 1.3E-13 88.2 24.3 355 569-944 27-407 (476)
54 PRK09401 reverse gyrase; Revie 99.3 9.9E-10 2.5E-14 93.7 20.4 85 21-121 102-191 (1176)
55 PRK09751 putative ATP-dependen 99.3 5.9E-09 1.5E-13 87.7 24.1 72 42-125 40-117 (1490)
56 PRK04914 ATP-dependent helicas 99.2 4.7E-08 1.2E-12 80.8 24.1 218 833-1074 492-717 (955)
57 KOG0338 consensus 99.2 9.3E-09 2.4E-13 86.2 19.4 311 621-963 198-546 (691)
58 KOG0333 consensus 99.2 9.7E-08 2.5E-12 78.4 24.6 304 625-944 267-624 (673)
59 KOG0335 consensus 99.2 3.3E-07 8.4E-12 74.3 26.7 320 627-971 98-469 (482)
60 pfam04851 ResIII Type III rest 99.2 2.3E-10 5.7E-15 98.7 9.2 100 624-784 2-102 (103)
61 KOG0951 consensus 99.2 2.2E-08 5.7E-13 83.3 19.3 294 631-941 310-697 (1674)
62 COG1110 Reverse gyrase [DNA re 99.2 1.3E-08 3.4E-13 85.0 18.1 90 20-122 105-196 (1187)
63 smart00490 HELICc helicase sup 99.1 1.8E-10 4.6E-15 99.4 7.7 81 849-932 2-82 (82)
64 KOG0328 consensus 99.1 1.5E-07 3.8E-12 76.9 22.6 296 629-961 53-384 (400)
65 cd00268 DEADc DEAD-box helicas 99.1 3.8E-08 9.7E-13 81.5 19.5 180 608-797 4-198 (203)
66 pfam00271 Helicase_C Helicase 99.1 1.4E-10 3.5E-15 100.3 6.9 73 859-932 6-78 (78)
67 KOG0342 consensus 99.1 9.5E-08 2.4E-12 78.4 20.8 304 618-944 98-437 (543)
68 TIGR01587 cas3_core CRISPR-ass 99.1 4E-09 1E-13 89.1 13.4 274 655-934 8-377 (424)
69 KOG0340 consensus 99.1 6.2E-07 1.6E-11 72.2 23.5 333 600-961 3-372 (442)
70 KOG0339 consensus 99.1 6.1E-07 1.5E-11 72.2 23.0 337 625-979 245-610 (731)
71 KOG0327 consensus 99.0 2.6E-07 6.6E-12 75.1 19.7 297 629-961 52-381 (397)
72 KOG0326 consensus 99.0 4.4E-08 1.1E-12 81.0 15.7 267 649-942 125-427 (459)
73 KOG0343 consensus 99.0 1.2E-06 3E-11 70.0 21.9 346 579-944 42-422 (758)
74 KOG0351 consensus 99.0 4.9E-06 1.3E-10 65.2 24.8 312 612-944 250-592 (941)
75 KOG0348 consensus 99.0 3E-07 7.6E-12 74.6 17.9 322 609-944 142-554 (708)
76 PRK11448 hsdR type I restricti 98.9 1.8E-06 4.5E-11 68.7 20.4 290 623-931 414-802 (1126)
77 KOG4284 consensus 98.8 8.5E-07 2.2E-11 71.1 17.1 47 863-909 299-345 (980)
78 KOG0332 consensus 98.8 2.1E-06 5.3E-11 68.1 18.5 287 653-961 136-455 (477)
79 COG4581 Superfamily II RNA hel 98.8 2.6E-06 6.7E-11 67.4 18.8 306 615-940 109-533 (1041)
80 PRK11131 ATP-dependent RNA hel 98.8 4.1E-05 1E-09 58.2 23.7 58 7-65 82-148 (1295)
81 KOG0347 consensus 98.7 3.9E-06 1E-10 66.0 17.1 249 674-945 261-571 (731)
82 COG1643 HrpA HrpA-like helicas 98.7 6.3E-06 1.6E-10 64.4 17.6 376 615-1009 42-479 (845)
83 KOG0334 consensus 98.7 4E-06 1E-10 65.9 15.8 302 625-958 387-732 (997)
84 TIGR00614 recQ_fam ATP-depende 98.6 3.4E-05 8.6E-10 58.8 19.7 330 627-1004 13-381 (497)
85 KOG0336 consensus 98.5 5.9E-05 1.5E-09 56.9 18.4 325 616-961 219-587 (629)
86 KOG0344 consensus 98.5 3.5E-08 8.8E-13 81.8 1.5 227 647-917 358-592 (593)
87 KOG0352 consensus 98.4 0.00017 4.3E-09 53.4 19.1 290 626-944 21-362 (641)
88 pfam00176 SNF2_N SNF2 family N 98.4 1.1E-05 2.8E-10 62.5 11.6 151 630-789 2-163 (295)
89 KOG0346 consensus 98.3 0.00024 6E-09 52.3 17.5 298 626-945 42-411 (569)
90 KOG0947 consensus 98.2 0.00088 2.3E-08 47.9 19.6 329 616-971 288-748 (1248)
91 KOG0337 consensus 98.2 0.00041 1E-08 50.4 16.1 426 607-1067 25-501 (529)
92 PRK05298 excinuclease ABC subu 98.1 0.00025 6.4E-09 52.1 13.4 158 775-941 389-554 (657)
93 COG4096 HsdR Type I site-speci 98.0 0.0015 3.8E-08 46.1 16.6 286 627-933 167-527 (875)
94 PRK09506 mrcB penicillin-bindi 98.0 5.4E-05 1.4E-09 57.2 8.5 88 114-203 92-187 (839)
95 KOG0341 consensus 98.0 0.0013 3.2E-08 46.7 15.3 293 625-945 192-529 (610)
96 PRK10917 ATP-dependent DNA hel 98.0 0.00015 3.8E-09 53.9 10.5 119 661-785 454-587 (677)
97 PRK08074 bifunctional ATP-depe 97.9 0.003 7.7E-08 43.8 27.3 135 776-911 679-835 (932)
98 KOG0353 consensus 97.8 0.0019 4.7E-08 45.4 13.8 301 613-942 70-465 (695)
99 COG0556 UvrB Helicase subunit 97.6 0.0033 8.4E-08 43.5 12.5 177 745-933 329-547 (663)
100 pfam07652 Flavi_DEAD Flaviviru 97.6 0.00019 4.8E-09 53.1 6.0 115 655-784 11-135 (146)
101 TIGR02071 PBP_1b penicillin-bi 97.6 0.00019 4.7E-09 53.1 5.8 95 117-218 31-133 (742)
102 KOG0950 consensus 97.6 0.00048 1.2E-08 49.9 7.7 305 655-979 249-653 (1008)
103 COG4889 Predicted helicase [Ge 97.6 0.011 2.8E-07 39.4 16.6 156 566-740 662-865 (1518)
104 KOG0387 consensus 97.5 0.0023 5.8E-08 44.7 10.3 133 651-789 229-381 (923)
105 PRK11747 dinG ATP-dependent DN 97.4 0.0096 2.5E-07 39.9 13.2 88 823-912 523-613 (697)
106 KOG0920 consensus 97.4 0.00052 1.3E-08 49.7 6.6 407 648-1078 190-741 (924)
107 TIGR03015 pepcterm_ATPase puta 97.4 0.0025 6.4E-08 44.4 9.9 181 626-836 24-210 (269)
108 TIGR01054 rgy reverse gyrase; 97.4 0.00031 8E-09 51.3 5.0 111 18-141 105-218 (1843)
109 KOG0349 consensus 97.3 0.022 5.6E-07 37.1 15.5 261 669-943 281-614 (725)
110 COG1110 Reverse gyrase [DNA re 97.3 0.00072 1.8E-08 48.6 5.9 18 418-435 348-365 (1187)
111 PRK09401 reverse gyrase; Revie 97.1 0.0015 3.8E-08 46.1 6.3 139 544-730 668-814 (1176)
112 TIGR01389 recQ ATP-dependent D 97.0 0.037 9.4E-07 35.4 13.0 243 695-944 70-333 (607)
113 COG0610 Type I site-specific r 96.8 0.05 1.3E-06 34.3 11.7 319 630-963 253-665 (962)
114 PRK05580 primosome assembly pr 96.8 0.014 3.7E-07 38.5 8.7 302 391-753 197-527 (699)
115 COG1200 RecG RecG-like helicas 96.7 0.017 4.4E-07 37.9 8.6 119 645-769 447-573 (677)
116 KOG0329 consensus 96.7 0.0095 2.4E-07 39.9 7.2 254 645-943 78-354 (387)
117 pfam07517 SecA_DEAD SecA DEAD- 96.6 0.01 2.6E-07 39.6 7.1 81 654-740 98-178 (381)
118 COG0553 HepA Superfamily II DN 96.5 0.0034 8.6E-08 43.4 4.1 153 630-788 343-515 (866)
119 cd00079 HELICc Helicase superf 96.5 0.025 6.3E-07 36.7 8.5 83 392-474 12-104 (131)
120 COG1329 Transcriptional regula 96.4 0.0036 9.2E-08 43.2 3.8 137 501-639 3-161 (166)
121 PRK08116 hypothetical protein; 96.4 0.061 1.6E-06 33.7 10.0 82 603-687 63-149 (262)
122 cd00009 AAA The AAA+ (ATPases 96.4 0.1 2.6E-06 32.0 11.0 96 629-760 2-97 (151)
123 pfam00270 DEAD DEAD/DEAH box h 96.3 0.045 1.1E-06 34.7 9.0 51 15-65 14-71 (167)
124 PRK12904 preprotein translocas 96.3 0.037 9.4E-07 35.4 8.4 127 337-463 358-491 (833)
125 KOG0948 consensus 96.3 0.025 6.4E-07 36.7 7.4 324 619-972 123-564 (1041)
126 COG1198 PriA Primosomal protei 96.2 0.037 9.3E-07 35.4 7.9 369 390-816 227-645 (730)
127 PRK13766 Hef nuclease; Provisi 96.2 0.053 1.3E-06 34.2 8.6 92 16-128 30-132 (764)
128 PRK12898 secA preprotein trans 96.2 0.043 1.1E-06 34.9 8.0 241 325-599 404-661 (673)
129 PRK12906 secA preprotein trans 96.1 0.037 9.5E-07 35.4 7.4 47 389-435 421-467 (823)
130 PRK11634 ATP-dependent RNA hel 96.0 0.077 2E-06 32.9 8.7 88 15-122 43-140 (629)
131 CHL00122 secA preprotein trans 95.9 0.052 1.3E-06 34.2 7.6 97 340-436 355-452 (891)
132 PRK02362 ski2-like helicase; P 95.9 0.03 7.7E-07 36.0 6.3 58 14-71 38-100 (736)
133 PRK04537 ATP-dependent RNA hel 95.8 0.064 1.6E-06 33.5 7.7 119 14-156 45-177 (574)
134 PRK12903 secA preprotein trans 95.8 0.062 1.6E-06 33.6 7.6 129 332-463 352-487 (885)
135 PRK13103 secA preprotein trans 95.8 0.045 1.1E-06 34.7 6.8 48 388-435 429-476 (913)
136 KOG0392 consensus 95.8 0.056 1.4E-06 34.0 7.3 283 647-968 995-1303(1549)
137 PRK09200 preprotein translocas 95.8 0.06 1.5E-06 33.8 7.4 70 366-435 390-459 (799)
138 PRK13104 secA preprotein trans 95.7 0.078 2E-06 32.9 7.8 197 388-603 424-662 (896)
139 PTZ00110 helicase; Provisional 95.6 0.18 4.5E-06 30.1 9.2 247 407-753 254-502 (602)
140 smart00487 DEXDc DEAD-like hel 95.5 0.16 4.1E-06 30.5 8.9 83 16-118 25-116 (201)
141 KOG0925 consensus 95.5 0.23 5.9E-06 29.2 10.9 278 650-944 66-387 (699)
142 KOG0385 consensus 95.5 0.093 2.4E-06 32.3 7.6 328 653-993 193-659 (971)
143 TIGR01970 DEAH_box_HrpB ATP-de 95.4 0.056 1.4E-06 34.0 6.2 335 736-1097 103-543 (858)
144 smart00382 AAA ATPases associa 95.4 0.12 3E-06 31.5 7.8 45 650-694 6-50 (148)
145 PRK12326 preprotein translocas 95.4 0.068 1.7E-06 33.4 6.6 48 389-436 419-466 (775)
146 PRK11192 ATP-dependent RNA hel 95.4 0.12 3.1E-06 31.3 7.9 91 15-123 40-141 (417)
147 PRK12901 secA preprotein trans 95.3 0.11 2.9E-06 31.6 7.5 193 734-942 498-743 (1111)
148 KOG0922 consensus 95.3 0.27 7E-06 28.7 19.4 295 620-943 48-389 (674)
149 PRK12900 secA preprotein trans 95.2 0.16 4E-06 30.6 8.0 227 337-603 482-742 (983)
150 PRK04837 ATP-dependent RNA hel 95.2 0.11 2.7E-06 31.8 7.0 91 14-122 45-149 (423)
151 PRK12902 secA preprotein trans 95.2 0.17 4.3E-06 30.3 8.1 47 389-435 425-471 (946)
152 COG4098 comFA Superfamily II D 95.2 0.13 3.3E-06 31.1 7.5 89 665-758 296-384 (441)
153 PRK12377 putative replication 95.2 0.29 7.4E-06 28.5 12.6 135 552-695 10-149 (248)
154 TIGR00643 recG ATP-dependent D 95.0 0.3 7.6E-06 28.4 8.9 244 395-767 344-628 (721)
155 PRK10590 ATP-dependent RNA hel 94.9 0.23 5.8E-06 29.3 8.1 90 15-122 38-140 (457)
156 PRK01297 ATP-dependent RNA hel 94.9 0.15 3.9E-06 30.6 7.2 89 15-122 121-225 (472)
157 KOG0953 consensus 94.9 0.11 2.9E-06 31.6 6.4 307 553-932 115-462 (700)
158 PRK13107 preprotein translocas 94.8 0.16 4.1E-06 30.4 7.1 76 388-463 429-510 (908)
159 PRK08533 flagellar accessory p 94.8 0.25 6.3E-06 29.0 7.9 121 16-158 25-157 (230)
160 KOG0389 consensus 94.4 0.43 1.1E-05 27.1 8.9 224 626-876 400-654 (941)
161 pfam09848 DUF2075 Uncharacteri 94.4 0.28 7.1E-06 28.6 7.6 48 17-64 3-56 (348)
162 smart00490 HELICc helicase sup 94.4 0.072 1.8E-06 33.1 4.5 61 694-755 3-63 (82)
163 KOG1123 consensus 94.4 0.45 1.1E-05 27.0 10.8 331 579-944 264-653 (776)
164 TIGR03117 cas_csf4 CRISPR-asso 94.3 0.45 1.2E-05 27.0 9.8 103 803-906 434-542 (636)
165 cd00046 DEXDc DEAD-like helica 94.2 0.24 6E-06 29.2 6.9 88 16-123 1-95 (144)
166 pfam05970 DUF889 PIF1 helicase 94.1 0.11 2.8E-06 31.7 5.0 42 22-63 1-48 (418)
167 PRK11776 ATP-dependent RNA hel 94.1 0.5 1.3E-05 26.7 8.3 89 15-123 41-139 (459)
168 KOG0924 consensus 93.8 0.56 1.4E-05 26.3 11.6 437 649-1113 374-927 (1042)
169 COG1484 DnaC DNA replication p 93.8 0.57 1.5E-05 26.2 11.4 118 573-696 37-154 (254)
170 pfam00271 Helicase_C Helicase 93.8 0.13 3.3E-06 31.2 4.8 56 698-754 3-58 (78)
171 cd01123 Rad51_DMC1_radA Rad51_ 93.5 0.58 1.5E-05 26.2 7.7 21 16-36 20-40 (235)
172 PRK07246 bifunctional ATP-depe 93.4 0.66 1.7E-05 25.7 14.5 83 823-910 636-720 (820)
173 TIGR00595 priA primosomal prot 93.4 0.23 5.8E-06 29.3 5.5 89 20-124 2-94 (524)
174 cd00268 DEADc DEAD-box helicas 93.1 0.72 1.8E-05 25.5 10.4 90 14-121 35-133 (203)
175 PRK07952 DNA replication prote 93.0 0.38 9.7E-06 27.6 6.2 70 624-694 72-143 (242)
176 pfam01695 IstB IstB-like ATP b 93.0 0.3 7.6E-06 28.4 5.6 79 599-687 6-88 (178)
177 COG0653 SecA Preprotein transl 93.0 0.35 8.8E-06 27.9 5.9 620 45-758 102-790 (822)
178 PRK12899 secA preprotein trans 93.0 0.54 1.4E-05 26.4 6.9 194 735-942 435-679 (969)
179 COG3267 ExeA Type II secretory 93.0 0.12 3E-06 31.5 3.5 208 591-843 4-225 (269)
180 PRK09361 radB DNA repair and r 92.9 0.45 1.1E-05 27.0 6.4 91 15-120 23-121 (224)
181 TIGR02621 cas3_GSU0051 CRISPR- 92.5 0.095 2.4E-06 32.2 2.6 127 494-631 709-848 (975)
182 PRK00254 ski2-like helicase; P 92.5 0.45 1.2E-05 27.0 5.9 58 14-71 38-101 (717)
183 pfam05496 RuvB_N Holliday junc 92.3 0.9 2.3E-05 24.7 7.6 156 624-832 23-193 (234)
184 cd01124 KaiC KaiC is a circadi 92.2 0.19 4.7E-06 30.0 3.7 125 18-163 2-139 (187)
185 PRK08939 primosomal protein Dn 92.2 0.94 2.4E-05 24.5 8.9 76 610-687 119-198 (306)
186 COG1222 RPT1 ATP-dependent 26S 92.0 0.88 2.2E-05 24.8 6.9 39 132-182 96-134 (406)
187 KOG0386 consensus 91.9 0.38 9.7E-06 27.6 5.0 129 651-789 418-560 (1157)
188 KOG1205 consensus 91.5 1.1 2.8E-05 24.0 8.9 170 14-242 11-183 (282)
189 TIGR02237 recomb_radB DNA repa 91.4 0.24 6.2E-06 29.1 3.6 27 420-446 137-163 (223)
190 PRK06526 transposase; Provisio 91.1 0.63 1.6E-05 25.9 5.4 43 645-687 97-139 (254)
191 CHL00195 ycf46 Ycf46; Provisio 90.9 1.2 3.1E-05 23.6 8.3 29 1-30 1-29 (491)
192 PRK06067 flagellar accessory p 90.9 0.33 8.5E-06 28.0 3.9 158 15-205 32-200 (241)
193 PRK07414 cob(I)yrinic acid a,c 90.8 0.85 2.2E-05 24.9 5.9 32 648-680 24-55 (178)
194 pfam03796 DnaB_C DnaB-like hel 90.8 1.3 3.2E-05 23.5 7.8 18 17-34 21-38 (186)
195 KOG0949 consensus 90.7 0.49 1.2E-05 26.7 4.6 84 861-944 963-1049(1330)
196 KOG0923 consensus 90.7 1.3 3.3E-05 23.5 14.0 327 601-942 213-604 (902)
197 pfam06745 KaiC KaiC. This fami 90.3 0.47 1.2E-05 26.8 4.2 48 15-63 19-71 (231)
198 pfam00004 AAA ATPase family as 90.0 1.5 3.7E-05 23.1 6.9 108 18-129 1-120 (131)
199 TIGR00348 hsdR type I site-spe 89.8 1.5 3.8E-05 23.0 7.3 152 22-192 330-544 (813)
200 KOG1000 consensus 89.5 1.4 3.6E-05 23.2 6.1 322 618-963 196-625 (689)
201 pfam03808 Glyco_tran_WecB Glyc 88.8 1.8 4.5E-05 22.4 8.6 20 408-427 101-120 (172)
202 TIGR02640 gas_vesic_GvpN gas v 88.8 0.69 1.8E-05 25.6 4.2 39 13-51 19-58 (265)
203 cd01491 Ube1_repeat1 Ubiquitin 88.7 1.7 4.3E-05 22.6 6.1 18 417-434 115-132 (286)
204 KOG4150 consensus 88.7 1.2 3.1E-05 23.6 5.4 199 737-941 398-637 (1034)
205 PRK12683 transcriptional regul 88.7 1.8 4.6E-05 22.4 8.8 23 938-960 271-293 (308)
206 PRK09841 cryptic autophosphory 88.7 1.3 3.3E-05 23.5 5.4 145 653-890 539-696 (726)
207 cd01394 radB RadB. The archaea 88.6 1.8 4.6E-05 22.3 7.6 100 6-120 7-117 (218)
208 PRK11889 flhF flagellar biosyn 88.5 1.8 4.7E-05 22.3 13.6 181 631-842 217-412 (436)
209 PRK00313 lpxK tetraacyldisacch 88.3 1.2 3.1E-05 23.6 5.2 28 408-436 237-264 (332)
210 PTZ00052 thioredoxin reductase 87.9 0.98 2.5E-05 24.4 4.5 19 29-47 53-72 (541)
211 PRK09134 short chain dehydroge 87.8 2 5.1E-05 22.0 9.7 50 14-63 8-58 (256)
212 PRK06835 DNA replication prote 87.8 0.94 2.4E-05 24.5 4.3 40 648-687 185-224 (330)
213 TIGR01350 lipoamide_DH dihydro 87.0 1.2 3E-05 23.8 4.4 27 18-47 5-32 (481)
214 cd02025 PanK Pantothenate kina 86.9 0.85 2.2E-05 24.9 3.6 15 139-153 60-74 (220)
215 TIGR02903 spore_lon_C ATP-depe 86.8 1 2.6E-05 24.3 4.0 99 38-152 52-173 (616)
216 PRK04328 hypothetical protein; 86.5 0.72 1.8E-05 25.4 3.1 129 15-161 24-171 (250)
217 PRK00080 ruvB Holliday junctio 86.5 2.4 6E-05 21.5 6.5 57 13-70 49-107 (328)
218 PRK09183 transposase/IS protei 86.1 2.5 6.3E-05 21.3 9.0 79 603-687 64-142 (258)
219 PRK06921 hypothetical protein; 85.9 2.3 5.9E-05 21.5 5.4 32 649-681 119-152 (265)
220 PRK08181 transposase; Validate 85.8 2.5 6.4E-05 21.2 11.1 55 633-687 92-147 (269)
221 PRK08251 short chain dehydroge 85.8 2.5 6.5E-05 21.2 9.6 58 15-72 2-59 (248)
222 COG0593 DnaA ATPase involved i 85.4 2.2 5.6E-05 21.7 5.1 89 532-644 307-396 (408)
223 KOG0388 consensus 84.2 3 7.6E-05 20.7 8.5 133 645-789 585-739 (1185)
224 PRK00149 dnaA chromosomal repl 84.0 2.8 7.1E-05 20.9 5.1 20 396-415 229-248 (447)
225 smart00488 DEXDc2 DEAD-like he 84.0 3 7.7E-05 20.6 10.0 73 622-696 5-83 (289)
226 smart00489 DEXDc3 DEAD-like he 84.0 3 7.7E-05 20.6 10.0 73 622-696 5-83 (289)
227 cd01120 RecA-like_NTPases RecA 83.9 3 7.7E-05 20.6 8.4 112 18-152 2-121 (165)
228 pfam02572 CobA_CobO_BtuR ATP:c 83.4 2.3 5.8E-05 21.6 4.5 35 645-680 3-37 (172)
229 TIGR03420 DnaA_homol_Hda DnaA 83.3 3.2 8.2E-05 20.4 12.0 157 616-835 12-176 (226)
230 PRK03992 proteasome-activating 83.1 3.3 8.3E-05 20.4 10.6 46 638-686 158-203 (390)
231 PTZ00301 uridine kinase; Provi 82.9 1.8 4.5E-05 22.4 3.8 32 18-49 6-43 (210)
232 pfam04348 LppC LppC putative l 82.8 3.3 8.5E-05 20.3 5.7 56 666-721 335-391 (535)
233 TIGR00963 secA preprotein tran 82.7 3.4 8.5E-05 20.3 5.6 92 344-435 370-462 (904)
234 COG0169 AroE Shikimate 5-dehyd 82.1 3.5 9E-05 20.1 7.1 32 402-433 143-175 (283)
235 KOG0730 consensus 82.1 3.5 9E-05 20.1 11.0 29 636-664 458-486 (693)
236 PRK06327 dihydrolipoamide dehy 81.9 3.3 8.4E-05 20.3 4.9 19 29-47 16-35 (475)
237 PRK05986 cob(I)yrinic acid a,c 81.9 2.6 6.7E-05 21.1 4.3 37 643-680 20-56 (190)
238 cd04903 ACT_LSD C-terminal ACT 81.6 1.9 4.9E-05 22.1 3.6 54 907-960 1-64 (71)
239 PRK10017 putative pyruvyl tran 81.5 2.4 6.2E-05 21.3 4.1 112 395-545 260-382 (426)
240 TIGR01455 glmM phosphoglucosam 80.8 0.43 1.1E-05 27.2 -0.0 56 109-166 179-258 (450)
241 PRK04220 2-phosphoglycerate ki 80.8 3.9 9.9E-05 19.8 5.3 12 89-100 76-87 (306)
242 COG0468 RecA RecA/RadA recombi 80.5 4 0.0001 19.7 7.7 11 170-180 59-69 (279)
243 cd02028 UMPK_like Uridine mono 80.5 2.3 5.8E-05 21.6 3.6 31 18-48 2-36 (179)
244 COG3972 Superfamily I DNA and 80.4 2.2 5.7E-05 21.6 3.6 29 613-642 589-617 (660)
245 COG3973 Superfamily I DNA and 80.4 2.7 6.8E-05 21.1 3.9 46 642-689 224-275 (747)
246 cd06533 Glyco_transf_WecG_TagA 79.4 4.3 0.00011 19.5 8.4 29 40-68 47-75 (171)
247 KOG0672 consensus 79.3 1 2.6E-05 24.3 1.5 35 625-659 155-190 (218)
248 PRK08903 hypothetical protein; 79.2 4.3 0.00011 19.4 11.8 153 616-835 15-174 (227)
249 PRK09302 circadian clock prote 79.1 4.4 0.00011 19.4 10.5 129 15-160 24-166 (501)
250 cd02023 UMPK Uridine monophosp 78.9 4.4 0.00011 19.4 5.5 31 18-48 2-34 (198)
251 PRK06197 short chain dehydroge 78.8 4.5 0.00011 19.3 7.6 64 8-72 9-73 (306)
252 cd00984 DnaB_C DnaB helicase C 78.5 4.5 0.00012 19.3 8.3 35 14-48 12-51 (242)
253 KOG2383 consensus 78.5 4.5 0.00012 19.3 4.9 37 392-433 371-407 (467)
254 COG3857 AddB ATP-dependent nuc 78.4 2.6 6.7E-05 21.1 3.4 45 392-436 308-356 (1108)
255 PRK06416 dihydrolipoamide dehy 78.2 4.6 0.00012 19.2 5.0 20 28-47 15-35 (462)
256 PRK00652 lpxK tetraacyldisacch 78.2 4.1 0.0001 19.6 4.3 12 145-156 70-81 (334)
257 pfam04466 Terminase_3 Phage te 77.9 4.7 0.00012 19.1 7.7 44 18-61 5-54 (387)
258 PRK10416 cell division protein 77.7 4.8 0.00012 19.1 7.6 148 573-733 196-382 (499)
259 PRK05642 DNA replication initi 77.4 4.8 0.00012 19.1 5.2 81 747-835 97-183 (234)
260 PRK06116 glutathione reductase 77.2 4.9 0.00012 19.0 5.0 19 29-47 16-35 (450)
261 CHL00176 ftsH cell division pr 77.0 5 0.00013 19.0 9.4 21 643-663 207-227 (631)
262 TIGR03499 FlhF flagellar biosy 76.5 5.1 0.00013 18.9 13.7 101 628-735 167-280 (282)
263 PRK08084 DNA replication initi 76.3 5.2 0.00013 18.8 7.1 30 650-680 49-79 (235)
264 cd01122 GP4d_helicase GP4d_hel 76.0 5.2 0.00013 18.8 7.9 33 14-46 29-66 (271)
265 pfam00899 ThiF ThiF family. Th 75.9 5.3 0.00013 18.8 4.9 53 836-893 44-98 (134)
266 cd00561 CobA_CobO_BtuR ATP:cor 75.9 5.3 0.00013 18.8 4.4 33 647-680 4-36 (159)
267 cd05566 PTS_IIB_galactitol PTS 75.3 4.1 0.00011 19.6 3.7 59 844-907 11-69 (89)
268 COG0300 DltE Short-chain dehyd 75.2 5.5 0.00014 18.6 7.5 60 13-73 4-63 (265)
269 PRK05480 uridine kinase; Provi 75.1 5.5 0.00014 18.6 6.9 32 18-49 9-42 (209)
270 TIGR00603 rad25 DNA repair hel 74.7 5.6 0.00014 18.5 4.7 148 24-194 297-479 (756)
271 PRK04195 replication factor C 74.5 5.7 0.00015 18.5 10.3 46 16-61 41-88 (403)
272 TIGR00537 hemK_rel_arch methyl 74.3 5.6 0.00014 18.5 4.2 46 391-436 120-165 (183)
273 TIGR00101 ureG urease accessor 74.0 3.7 9.4E-05 20.0 3.2 10 468-477 140-149 (199)
274 pfam02562 PhoH PhoH-like prote 73.8 5.9 0.00015 18.4 6.2 118 16-155 20-145 (205)
275 PRK00771 signal recognition pa 73.8 5.9 0.00015 18.4 4.2 169 16-205 98-284 (433)
276 PRK05872 short chain dehydroge 73.2 6.1 0.00016 18.3 6.5 87 12-116 6-92 (296)
277 PRK05875 short chain dehydroge 72.3 6.4 0.00016 18.1 9.4 91 14-117 6-97 (277)
278 COG2256 MGS1 ATPase related to 72.1 6.4 0.00016 18.1 5.1 130 7-149 39-174 (436)
279 KOG0391 consensus 72.1 6.4 0.00016 18.1 8.2 133 846-986 1261-1429(1958)
280 PRK05976 dihydrolipoamide dehy 71.7 6.6 0.00017 18.0 5.4 19 29-47 16-35 (464)
281 pfam03918 CcmH Cytochrome C bi 71.7 6.3 0.00016 18.2 3.9 28 1043-1073 58-85 (145)
282 COG0623 FabI Enoyl-[acyl-carri 71.6 1.8 4.5E-05 22.5 1.1 47 15-61 6-54 (259)
283 PRK05854 short chain dehydroge 71.6 6.6 0.00017 18.0 7.6 59 13-72 12-71 (314)
284 TIGR03147 cyt_nit_nrfF cytochr 71.4 6.4 0.00016 18.1 3.9 30 1042-1074 60-89 (126)
285 PRK10646 putative ATPase; Prov 71.4 2.7 6.8E-05 21.0 2.0 39 534-572 104-142 (153)
286 PRK12364 ribonucleotide-diphos 71.4 6.7 0.00017 18.0 4.3 46 564-609 459-509 (842)
287 PRK08219 short chain dehydroge 71.0 6.8 0.00017 17.9 8.0 43 16-59 4-46 (226)
288 TIGR03238 dnd_assoc_3 dnd syst 70.9 6.8 0.00017 17.9 7.3 24 14-37 31-54 (504)
289 cd01294 DHOase Dihydroorotase 70.9 3.3 8.4E-05 20.3 2.4 12 421-432 280-291 (335)
290 COG3587 Restriction endonuclea 70.7 6.9 0.00018 17.9 7.8 133 18-170 77-220 (985)
291 COG0855 Ppk Polyphosphate kina 70.5 3.6 9.1E-05 20.1 2.5 18 664-681 387-404 (696)
292 PRK00258 aroE shikimate 5-dehy 70.2 7 0.00018 17.8 6.1 17 411-427 149-165 (275)
293 COG4646 DNA methylase [Transcr 70.1 3.3 8.5E-05 20.3 2.2 110 537-655 476-586 (637)
294 PRK09906 DNA-binding transcrip 69.8 7.2 0.00018 17.7 7.2 10 26-35 30-39 (296)
295 PRK13748 putative mercuric red 69.6 7.2 0.00018 17.7 5.0 37 129-165 36-72 (561)
296 COG1199 DinG Rad3-related DNA 69.2 7.4 0.00019 17.7 7.7 50 14-63 33-87 (654)
297 PRK11773 uvrD DNA-dependent he 68.6 5.2 0.00013 18.8 3.0 56 10-65 17-80 (722)
298 cd04879 ACT_3PGDH-like ACT_3PG 68.5 7.1 0.00018 17.8 3.6 53 907-959 1-63 (71)
299 pfam07728 AAA_5 AAA domain (dy 67.9 4 0.0001 19.7 2.2 18 650-667 3-20 (139)
300 KOG1208 consensus 67.7 7.9 0.0002 17.4 9.2 57 14-71 34-91 (314)
301 KOG1564 consensus 67.5 7.9 0.0002 17.4 5.1 24 206-229 130-153 (351)
302 PRK05896 DNA polymerase III su 67.3 8 0.0002 17.4 3.8 73 674-758 517-598 (613)
303 pfam07015 VirC1 VirC1 protein. 67.1 8 0.00021 17.4 7.3 30 28-57 18-49 (231)
304 PRK10144 formate-dependent nit 66.8 8.1 0.00021 17.3 3.9 30 1042-1074 60-89 (126)
305 PHA00012 assembly protein 66.4 8.3 0.00021 17.3 5.1 52 91-143 103-154 (361)
306 pfam02374 ArsA_ATPase Anion-tr 66.3 8.3 0.00021 17.2 4.1 48 16-65 2-53 (304)
307 PRK05599 hypothetical protein; 66.3 8.3 0.00021 17.2 9.5 51 18-71 3-54 (246)
308 cd00755 YgdL_like Family of ac 66.0 8.4 0.00021 17.2 4.4 32 16-48 12-44 (231)
309 PRK05973 replicative DNA helic 65.8 7.7 0.0002 17.5 3.4 12 454-465 186-197 (237)
310 PRK06939 2-amino-3-ketobutyrat 65.6 8.6 0.00022 17.1 5.6 107 43-176 80-193 (395)
311 TIGR01357 aroB 3-dehydroquinat 65.4 2.6 6.6E-05 21.2 0.9 19 418-436 280-298 (361)
312 PRK05541 adenylylsulfate kinas 65.2 8.7 0.00022 17.1 4.6 80 14-119 6-89 (176)
313 PRK05201 hslU ATP-dependent pr 64.3 5.9 0.00015 18.4 2.6 35 14-48 49-84 (442)
314 COG1220 HslU ATP-dependent pro 64.3 6 0.00015 18.3 2.6 29 16-44 51-80 (444)
315 pfam04415 DUF515 Protein of un 64.1 8.6 0.00022 17.1 3.4 94 83-182 146-260 (416)
316 pfam07475 Hpr_kinase_C HPr Ser 64.0 4.3 0.00011 19.5 1.8 25 460-484 68-93 (171)
317 cd00550 ArsA_ATPase Oxyanion-t 63.7 9.2 0.00024 16.9 4.0 40 18-59 3-46 (254)
318 KOG0701 consensus 63.5 1.6 4E-05 22.9 -0.5 50 621-670 1109-1160(1606)
319 PRK08727 hypothetical protein; 63.5 9.3 0.00024 16.9 5.9 157 616-835 16-179 (233)
320 cd01492 Aos1_SUMO Ubiquitin ac 63.4 9.3 0.00024 16.9 7.7 106 759-894 11-118 (197)
321 PRK12339 2-phosphoglycerate ki 63.3 5.5 0.00014 18.6 2.2 56 16-77 4-63 (197)
322 TIGR00345 arsA arsenite-activa 63.2 8.3 0.00021 17.3 3.1 20 416-435 239-258 (330)
323 KOG1001 consensus 63.1 9.5 0.00024 16.8 6.9 244 650-924 156-483 (674)
324 pfam02503 PP_kinase Polyphosph 63.0 6.3 0.00016 18.2 2.5 46 395-440 375-425 (678)
325 pfam12073 DUF3553 Protein of u 62.9 6.3 0.00016 18.2 2.5 45 503-555 1-48 (52)
326 TIGR02194 GlrX_NrdH Glutaredox 62.8 5.7 0.00015 18.5 2.2 61 111-171 2-62 (72)
327 cd02027 APSK Adenosine 5'-phos 62.7 6.1 0.00016 18.3 2.4 113 18-157 2-121 (149)
328 PRK10310 galactitol-specific P 62.4 4.3 0.00011 19.5 1.6 38 409-446 3-45 (94)
329 cd02037 MRP-like MRP (Multiple 62.2 9.8 0.00025 16.7 5.5 28 653-680 7-34 (169)
330 PRK06647 DNA polymerase III su 62.1 9.8 0.00025 16.7 8.4 25 13-37 36-60 (560)
331 cd03421 SirA_like_N SirA_like_ 62.1 9.8 0.00025 16.7 4.1 39 131-170 26-64 (67)
332 pfam00308 Bac_DnaA Bacterial d 62.0 9.8 0.00025 16.7 8.6 18 18-35 37-54 (219)
333 pfam08423 Rad51 Rad51. Rad51 i 61.8 9.9 0.00025 16.6 7.1 17 18-34 46-62 (261)
334 PRK05443 polyphosphate kinase; 61.7 6.9 0.00017 17.9 2.5 46 395-440 382-432 (692)
335 pfam06506 PrpR_N Propionate ca 61.6 10 0.00026 16.6 6.2 36 395-436 110-145 (169)
336 KOG1728 consensus 61.4 7 0.00018 17.8 2.5 11 500-510 115-125 (156)
337 PRK07105 pyridoxamine kinase; 61.3 10 0.00026 16.6 5.5 48 542-591 202-254 (284)
338 PRK09508 leuO leucine transcri 61.1 10 0.00026 16.6 5.0 17 224-240 48-64 (314)
339 PRK10867 signal recognition pa 60.8 10 0.00026 16.5 8.5 172 15-205 100-290 (453)
340 pfam02367 UPF0079 Uncharacteri 60.8 2.7 6.8E-05 21.0 0.3 63 649-720 18-80 (123)
341 cd06304 PBP1_BmpA_like Peripla 60.8 10 0.00026 16.5 5.2 14 403-416 174-187 (260)
342 pfam00485 PRK Phosphoribulokin 60.5 10 0.00027 16.5 4.8 19 18-36 2-20 (196)
343 PRK10865 protein disaggregatio 60.4 10 0.00027 16.5 4.2 129 761-914 571-719 (857)
344 COG1519 KdtA 3-deoxy-D-manno-o 60.4 10 0.00027 16.5 5.0 28 276-303 254-281 (419)
345 TIGR00972 3a0107s01c2 phosphat 60.1 11 0.00027 16.4 4.2 33 392-428 181-213 (248)
346 PRK13341 recombination factor 60.0 11 0.00027 16.4 7.4 132 5-150 41-180 (726)
347 KOG1370 consensus 59.8 4.6 0.00012 19.2 1.3 67 641-709 211-311 (434)
348 PRK07831 short chain dehydroge 59.6 11 0.00027 16.4 8.7 58 15-72 16-74 (261)
349 PRK00654 glgA glycogen synthas 59.2 11 0.00028 16.3 9.4 32 392-423 306-337 (476)
350 pfam09572 RE_XamI XamI restric 58.7 11 0.00028 16.3 3.2 33 142-174 125-164 (251)
351 PRK10875 recD exonuclease V su 58.5 11 0.00029 16.2 7.3 25 406-430 192-216 (607)
352 pfam02606 LpxK Tetraacyldisacc 57.9 11 0.00029 16.2 5.1 27 408-435 221-247 (318)
353 PRK08263 short chain dehydroge 57.7 12 0.00029 16.2 5.8 43 16-58 4-46 (275)
354 cd02042 ParA ParA and ParB of 57.7 12 0.00029 16.1 3.2 29 22-50 10-39 (104)
355 KOG2126 consensus 57.6 7.4 0.00019 17.6 2.1 41 1066-1108 738-778 (895)
356 KOG0078 consensus 57.6 7.3 0.00019 17.7 2.0 21 177-197 37-57 (207)
357 PRK07429 phosphoribulokinase; 57.4 12 0.0003 16.1 3.4 39 12-50 3-45 (331)
358 PRK07832 short chain dehydroge 57.3 12 0.0003 16.1 9.4 50 16-65 1-50 (272)
359 TIGR01485 SPP_plant-cyano sucr 57.3 6.4 0.00016 18.1 1.7 23 395-417 176-198 (257)
360 KOG0152 consensus 57.1 12 0.0003 16.1 3.9 11 422-432 374-384 (463)
361 cd01393 recA_like RecA is a b 57.1 12 0.0003 16.1 7.6 22 15-36 19-40 (226)
362 PRK12724 flagellar biosynthesi 57.0 12 0.0003 16.1 16.5 157 651-843 228-395 (432)
363 COG3088 CcmH Uncharacterized p 56.8 12 0.0003 16.1 3.7 38 1042-1082 64-106 (153)
364 cd01302 Cyclic_amidohydrolases 56.4 10 0.00026 16.6 2.6 10 421-430 269-278 (337)
365 cd04902 ACT_3PGDH-xct C-termin 56.2 12 0.00031 16.0 3.1 54 908-961 2-65 (73)
366 PRK09165 replicative DNA helic 56.1 12 0.00031 16.0 8.5 18 135-152 58-75 (484)
367 TIGR00390 hslU heat shock prot 56.0 9.1 0.00023 16.9 2.3 47 14-60 46-101 (463)
368 PRK05937 8-amino-7-oxononanoat 56.0 12 0.00031 16.0 5.7 131 44-202 50-189 (370)
369 pfam01583 APS_kinase Adenylyls 56.0 12 0.00031 16.0 2.9 115 16-157 3-124 (157)
370 TIGR00507 aroE shikimate 5-deh 55.8 12 0.00031 15.9 7.7 60 402-465 138-203 (286)
371 cd06326 PBP1_STKc_like Type I 55.6 12 0.00032 15.9 7.2 40 130-169 111-150 (336)
372 cd06366 PBP1_GABAb_receptor Li 55.0 13 0.00032 15.8 6.7 59 110-169 91-149 (350)
373 PRK12402 replication factor C 55.0 13 0.00032 15.8 3.1 16 649-664 39-54 (337)
374 PRK04301 radA DNA repair and r 54.9 13 0.00032 15.8 7.1 32 131-167 81-112 (318)
375 TIGR02535 hyp_Hser_kinase prop 54.9 2.1 5.2E-05 21.9 -1.1 46 514-560 276-332 (431)
376 TIGR03138 QueF 7-cyano-7-deaza 54.8 13 0.00032 15.8 3.5 16 219-234 76-91 (275)
377 pfam07726 AAA_3 ATPase family 54.7 9.5 0.00024 16.8 2.2 28 18-45 2-30 (131)
378 cd06331 PBP1_AmiC_like Type I 54.4 13 0.00033 15.8 6.4 33 131-163 108-140 (333)
379 PRK13655 phosphoenolpyruvate c 54.2 13 0.00033 15.8 5.2 24 618-641 416-442 (487)
380 KOG0399 consensus 54.0 13 0.00033 15.7 5.1 101 805-928 1016-1170(2142)
381 KOG1969 consensus 53.4 13 0.00033 15.8 2.8 68 649-756 329-396 (877)
382 cd01918 HprK_C HprK/P, the bif 53.3 9.3 0.00024 16.9 2.0 16 650-665 18-33 (149)
383 PHA02518 ParA-like protein; Pr 53.2 13 0.00034 15.6 3.0 29 22-50 11-40 (211)
384 pfam04477 consensus 53.2 13 0.00034 15.6 5.5 25 618-642 422-449 (498)
385 PRK03080 phosphoserine aminotr 53.1 13 0.00034 15.7 2.8 10 66-75 67-76 (381)
386 KOG0060 consensus 53.0 6.3 0.00016 18.2 1.1 15 603-617 556-570 (659)
387 PRK10329 glutaredoxin-like pro 53.0 7.7 0.0002 17.5 1.5 61 110-171 3-63 (81)
388 PRK06843 inositol-5-monophosph 52.9 14 0.00035 15.6 7.5 35 502-536 292-328 (404)
389 PRK05564 DNA polymerase III su 52.6 14 0.00035 15.6 4.2 14 18-31 29-42 (313)
390 PRK12723 flagellar biosynthesi 52.5 14 0.00035 15.6 15.6 169 650-849 178-357 (388)
391 pfam03205 MobB Molybdopterin g 52.5 14 0.00035 15.6 3.9 30 143-172 17-49 (122)
392 PRK00002 aroB 3-dehydroquinate 52.3 6.1 0.00016 18.3 1.0 20 416-435 283-302 (360)
393 cd01065 NAD_bind_Shikimate_DH 52.2 14 0.00035 15.5 6.5 52 12-63 16-67 (155)
394 pfam07724 AAA_2 AAA domain (Cd 52.2 12 0.0003 16.1 2.4 14 19-32 7-20 (168)
395 PRK09242 tropinone reductase; 52.1 14 0.00036 15.5 9.5 91 14-117 9-99 (258)
396 PRK10923 glnG nitrogen regulat 52.1 14 0.00036 15.5 4.1 38 394-431 147-184 (469)
397 TIGR01618 phage_P_loop phage n 52.0 4 0.0001 19.7 -0.0 30 389-418 118-149 (229)
398 PRK13900 type IV secretion sys 52.0 10 0.00026 16.6 2.0 10 275-284 179-188 (332)
399 PRK10985 putative hydrolase; P 51.9 14 0.00036 15.5 5.6 61 108-177 88-148 (325)
400 PRK11074 putative DNA-binding 51.9 14 0.00036 15.5 6.9 11 25-35 30-40 (300)
401 COG0541 Ffh Signal recognition 51.5 14 0.00036 15.4 7.9 173 13-206 98-290 (451)
402 TIGR01533 lipo_e_P4 5'-nucleot 51.5 8.6 0.00022 17.1 1.6 38 398-435 149-188 (295)
403 PRK08644 thiamine biosynthesis 51.5 14 0.00036 15.4 4.8 18 126-143 112-129 (209)
404 TIGR00150 TIGR00150 conserved 51.5 6.4 0.00016 18.1 0.9 35 14-48 27-62 (147)
405 TIGR01241 FtsH_fam ATP-depende 51.5 14 0.00036 15.4 3.8 161 2-171 79-283 (505)
406 pfam00493 MCM MCM2/3/5 family. 51.4 11 0.00028 16.3 2.1 11 164-174 107-117 (327)
407 COG1493 HprK Serine kinase of 51.4 11 0.00028 16.3 2.1 16 273-288 39-54 (308)
408 PRK13342 recombination factor 51.3 14 0.00037 15.4 6.1 130 6-152 27-162 (417)
409 PRK05428 HPr kinase/phosphoryl 51.2 8.9 0.00023 17.0 1.6 17 273-289 40-56 (308)
410 KOG1803 consensus 51.1 14 0.00037 15.4 2.8 93 617-718 177-272 (649)
411 CHL00095 clpC Clp protease ATP 50.8 15 0.00037 15.4 4.5 170 684-913 470-659 (823)
412 pfam11605 Vps36_ESCRT-II Vacuo 50.6 8.2 0.00021 17.3 1.4 40 503-543 10-53 (92)
413 COG1618 Predicted nucleotide k 50.5 15 0.00038 15.3 4.0 33 644-676 3-35 (179)
414 PRK12337 2-phosphoglycerate ki 50.5 15 0.00038 15.3 3.1 89 642-739 258-378 (492)
415 PRK07369 dihydroorotase; Provi 50.4 15 0.00038 15.3 3.6 51 697-747 270-323 (419)
416 PRK10341 DNA-binding transcrip 50.3 15 0.00038 15.3 5.8 29 936-964 272-300 (312)
417 pfam07755 DUF1611 Protein of u 50.3 11 0.00028 16.4 2.0 67 527-593 211-286 (302)
418 cd04130 Wrch_1 Wrch-1 subfamil 50.3 11 0.00028 16.3 2.0 19 140-158 10-28 (173)
419 PRK03620 5-dehydro-4-deoxygluc 50.2 15 0.00038 15.3 6.8 89 3-98 24-123 (296)
420 cd00757 ThiF_MoeB_HesA_family 50.2 15 0.00038 15.3 3.7 35 16-51 22-57 (228)
421 cd01318 DHOase_IIb Dihydroorot 50.1 15 0.00038 15.3 3.0 10 421-430 289-298 (361)
422 PRK06949 short chain dehydroge 49.9 15 0.00038 15.3 8.1 57 13-71 7-63 (258)
423 pfam09587 PGA_cap Bacterial ca 49.8 15 0.00038 15.3 3.9 31 714-744 189-219 (237)
424 PRK06125 short chain dehydroge 49.7 15 0.00038 15.3 9.3 58 14-72 6-63 (259)
425 pfam05707 Zot Zonular occluden 49.7 15 0.00039 15.2 5.1 37 396-432 94-130 (183)
426 cd02026 PRK Phosphoribulokinas 49.6 15 0.00039 15.2 3.4 32 18-49 2-35 (273)
427 TIGR02173 cyt_kin_arch cytidyl 49.5 14 0.00037 15.4 2.5 18 496-513 140-157 (173)
428 PRK12384 sorbitol-6-phosphate 49.4 15 0.00039 15.2 9.5 57 16-72 3-59 (259)
429 PRK11716 DNA-binding transcrip 49.4 15 0.00039 15.2 6.0 12 722-733 110-121 (269)
430 COG3875 Uncharacterized conser 49.3 15 0.00039 15.2 3.8 67 616-683 247-320 (423)
431 cd07037 TPP_PYR_MenD Pyrimidin 49.2 15 0.00039 15.2 12.9 123 5-156 2-124 (162)
432 cd01133 F1-ATPase_beta F1 ATP 49.0 15 0.00039 15.2 3.5 13 407-419 161-173 (274)
433 PRK10246 exonuclease subunit S 48.8 8.3 0.00021 17.3 1.2 19 17-35 32-50 (1047)
434 PRK00889 adenylylsulfate kinas 48.8 16 0.0004 15.1 2.8 115 15-158 4-125 (175)
435 pfam03969 AFG1_ATPase AFG1-lik 48.5 16 0.0004 15.1 5.4 25 13-37 59-83 (361)
436 PRK06115 dihydrolipoamide dehy 48.5 16 0.0004 15.1 4.5 18 29-46 15-33 (466)
437 PRK08643 acetoin reductase; Va 48.2 16 0.0004 15.1 9.1 29 34-62 21-49 (256)
438 TIGR02533 type_II_gspE general 48.1 16 0.00041 15.1 4.1 47 193-239 23-70 (495)
439 pfam01870 Hjc Archaeal hollida 48.1 15 0.00037 15.3 2.4 43 534-576 43-87 (93)
440 cd03791 GT1_Glycogen_synthase_ 48.0 16 0.00041 15.1 10.3 33 392-424 309-341 (476)
441 COG1341 Predicted GTPase or GT 48.0 16 0.00041 15.1 5.2 51 143-203 90-140 (398)
442 cd01127 TrwB Bacterial conjuga 47.9 16 0.00041 15.1 4.6 50 15-70 42-95 (410)
443 TIGR01546 GAPDH-II_archae glyc 47.7 7 0.00018 17.8 0.7 17 399-415 233-249 (335)
444 COG0003 ArsA Predicted ATPase 47.7 16 0.00041 15.0 3.8 30 18-47 5-38 (322)
445 PRK05899 transketolase; Review 47.4 16 0.00042 15.0 8.2 45 794-843 473-518 (661)
446 PRK01211 dihydroorotase; Provi 47.2 15 0.00038 15.3 2.3 24 713-736 256-279 (413)
447 PHA00350 putative assembly pro 47.2 16 0.00042 15.0 6.2 37 532-572 362-400 (402)
448 cd03699 lepA_II lepA_II: This 47.0 8.5 0.00022 17.2 1.0 15 496-510 71-85 (86)
449 TIGR02095 glgA glycogen/starch 47.0 17 0.00042 14.9 8.9 39 391-429 338-378 (517)
450 KOG3063 consensus 46.9 7.8 0.0002 17.4 0.8 37 504-542 144-180 (301)
451 pfam05729 NACHT NACHT domain. 46.9 17 0.00042 14.9 2.8 11 408-418 119-129 (165)
452 TIGR03371 cellulose_yhjQ cellu 46.8 17 0.00042 14.9 3.1 29 22-50 12-41 (246)
453 cd01522 RHOD_1 Member of the R 46.7 17 0.00043 14.9 4.4 41 396-436 52-92 (117)
454 TIGR02424 TF_pcaQ pca operon t 46.5 11 0.00027 16.4 1.4 27 409-435 193-219 (300)
455 KOG0926 consensus 46.5 17 0.00043 14.9 3.9 42 695-736 597-638 (1172)
456 PRK07201 short chain dehydroge 46.4 17 0.00043 14.9 7.1 46 17-63 2-48 (663)
457 TIGR02639 ClpA ATP-dependent C 46.4 11 0.00028 16.3 1.5 133 518-664 381-545 (774)
458 cd04176 Rap2 Rap2 subgroup. T 46.4 14 0.00036 15.5 2.0 12 144-155 15-26 (163)
459 smart00010 small_GTPase Small 46.4 14 0.00036 15.5 2.0 17 650-666 4-20 (124)
460 PRK09310 aroDE bifunctional 3- 46.4 17 0.00043 14.9 5.4 93 583-700 279-377 (477)
461 cd02035 ArsA ArsA ATPase funct 46.4 17 0.00043 14.9 4.0 32 18-49 2-37 (217)
462 PRK13849 putative crown gall t 46.3 17 0.00043 14.9 6.6 32 26-57 16-49 (231)
463 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 46.2 17 0.00043 14.9 3.0 62 120-192 4-68 (232)
464 PRK09060 dihydroorotase; Valid 46.1 17 0.00043 14.9 2.9 47 701-747 271-320 (444)
465 KOG0921 consensus 46.1 17 0.00043 14.9 2.7 88 864-961 678-782 (1282)
466 pfam01745 IPT Isopentenyl tran 46.0 17 0.00043 14.9 2.4 27 18-44 4-31 (232)
467 PRK12289 ribosome-associated G 46.0 17 0.00043 14.8 3.5 29 207-235 85-114 (351)
468 PRK08328 hypothetical protein; 45.0 18 0.00045 14.7 2.8 27 853-879 90-116 (230)
469 PRK08769 DNA polymerase III su 44.9 18 0.00045 14.7 4.8 23 13-35 24-46 (319)
470 COG2503 Predicted secreted aci 44.7 12 0.00032 15.9 1.6 21 398-418 128-148 (274)
471 PRK09270 frcK putative fructos 44.7 18 0.00045 14.7 3.6 24 13-36 30-55 (230)
472 cd04132 Rho4_like Rho4-like su 44.7 15 0.00039 15.2 2.0 17 140-156 10-26 (187)
473 TIGR03345 VI_ClpV1 type VI sec 44.6 18 0.00046 14.7 4.0 132 679-872 523-662 (852)
474 PRK07667 uridine kinase; Provi 44.5 18 0.00046 14.7 5.1 44 5-48 2-51 (190)
475 cd04120 Rab12 Rab12 subfamily. 44.3 16 0.0004 15.2 2.0 16 142-157 12-27 (202)
476 TIGR00936 ahcY adenosylhomocys 44.2 15 0.00039 15.2 1.9 24 402-425 205-231 (422)
477 pfam11325 DUF3127 Protein of u 43.9 18 0.00046 14.7 2.3 41 161-203 16-56 (84)
478 KOG0732 consensus 43.9 18 0.00047 14.6 9.0 20 625-644 617-636 (1080)
479 cd01875 RhoG RhoG subfamily. 43.8 16 0.00042 15.0 2.0 44 139-191 12-57 (191)
480 PRK08506 replicative DNA helic 43.8 18 0.00047 14.6 7.5 43 545-597 342-386 (473)
481 TIGR00854 pts-sorbose PTS syst 43.7 15 0.00038 15.3 1.8 37 394-434 62-98 (152)
482 PRK08340 glucose-1-dehydrogena 43.6 18 0.00047 14.6 8.2 53 17-72 2-54 (259)
483 PRK05690 molybdopterin biosynt 43.5 19 0.00047 14.6 2.7 147 16-192 33-180 (245)
484 TIGR00600 rad2 DNA excision re 43.5 19 0.00047 14.6 3.4 79 382-467 822-900 (1127)
485 PRK06370 mercuric reductase; V 43.4 19 0.00047 14.6 6.0 20 28-47 15-35 (459)
486 PRK12745 3-ketoacyl-(acyl-carr 43.4 19 0.00047 14.6 6.2 56 16-73 6-62 (259)
487 COG2927 HolC DNA polymerase II 43.2 19 0.00048 14.5 8.8 38 396-433 17-54 (144)
488 cd01483 E1_enzyme_family Super 43.0 19 0.00048 14.5 5.3 42 848-894 56-97 (143)
489 PRK11705 cyclopropane fatty ac 43.0 19 0.00048 14.5 7.0 143 558-709 62-221 (383)
490 COG3897 Predicted methyltransf 42.9 19 0.00048 14.5 3.3 40 641-681 138-177 (218)
491 smart00854 PGA_cap Bacterial c 42.9 18 0.00046 14.7 2.1 25 712-736 189-213 (239)
492 PRK13531 regulatory ATPase Rav 42.8 19 0.00048 14.5 3.5 61 656-716 21-81 (498)
493 KOG0635 consensus 42.7 19 0.00048 14.5 2.4 54 8-61 24-80 (207)
494 cd01130 VirB11-like_ATPase Typ 42.7 19 0.00048 14.5 3.5 30 650-680 29-58 (186)
495 pfam02670 DXP_reductoisom 1-de 42.5 19 0.00049 14.5 4.2 80 596-679 40-119 (129)
496 PRK07471 DNA polymerase III su 42.5 19 0.00049 14.5 4.3 38 630-667 22-60 (363)
497 PRK12475 thiamine/molybdopteri 42.5 19 0.00049 14.5 4.4 54 836-894 67-124 (337)
498 pfam09140 MipZ ATPase MipZ. Mi 42.3 19 0.00049 14.4 3.0 25 656-680 11-35 (261)
499 cd01870 RhoA_like RhoA-like su 42.3 18 0.00045 14.7 2.0 16 650-665 5-20 (175)
500 PTZ00153 lipoamide dehydrogena 42.2 19 0.00049 14.4 4.0 85 652-743 131-271 (673)
No 1
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=0 Score=3125.71 Aligned_cols=1125 Identities=34% Similarity=0.579 Sum_probs=1036.4
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHH
Q ss_conf 514886089803765227999999986-2998999929989999999999985799809985722467010048998999
Q gi|254780947|r 11 SEKYCKKITLSPVIDGTEGFILAEIAR-LGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVV 89 (1187)
Q Consensus 11 ~~k~~~~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~ 89 (1187)
..+.|++..|+|++||++|+++|++++ .++|+|+||+|..+|.+|+++|.+|.+ .+|++||+||+||||.+|||++++
T Consensus 10 p~~aG~~~~l~gL~GSA~al~lA~l~~~~~~p~lvV~~d~~~A~~l~~dL~~f~~-~~V~~fP~wEtLPYd~~SP~~di~ 88 (1148)
T PRK10689 10 PVKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFSPHQDII 88 (1148)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-CCEEECCCHHCCCCCCCCCCHHHH
T ss_conf 8999971267788606999999999997099889991999999999999985489-725689721047766579986899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEE
Q ss_conf 99999999984124468876999566785236998668851548994097419999999999828845545217831654
Q gi|254780947|r 90 TRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAV 169 (1187)
Q Consensus 90 ~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAv 169 (1187)
++|+++|++|.+ .++.|||||++||+||+||++++.++++.|++|+++|+++|.++|+.+||+||++|++|||||+
T Consensus 89 s~Rl~~L~~L~~----~~~~IvVttv~ALlqrlpP~~~l~~~~l~L~~G~~ld~d~L~~~L~~~GY~rv~~V~epGEFAv 164 (1148)
T PRK10689 89 SSRLSTLYQLPT----MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYAT 164 (1148)
T ss_pred HHHHHHHHHHHC----CCCCEEEEEHHHHHCCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 999999998752----8999999768996222699899963738995878549999999999869915450588526987
Q ss_pred ECCEEEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCHHHCHH
Q ss_conf 57475730698887268863487221015451374853122216999437732179999999999999741737001577
Q gi|254780947|r 170 RGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPL 249 (1187)
Q Consensus 170 RGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i~~fr~~~r~~f~~~~~~~~i 249 (1187)
||||||||||++++|||||||||||||||.|||+||||+++++++.|+||+|++++++.++.|+++|++.|+.....+.+
T Consensus 165 RGgIIDIFP~~~~~PvRIEFFgDEIESIR~FDp~TQRSi~~i~~i~I~Pa~E~~l~~~~i~~fr~~~re~f~~~~~~~~i 244 (1148)
T PRK10689 165 RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 (1148)
T ss_pred ECCEEEECCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 68989988899882669992497876367577010777467775999757256679899999999999873156226899
Q ss_pred HHHHHCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCEECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 78997789878877767776148-76767334676133465-35899998899999998999998652220265567850
Q gi|254780947|r 250 YVAISQGRRYPGMEHWLPFFYQS-METIFPYLSEFCIITDP-LVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAP 327 (1187)
Q Consensus 250 ~e~Is~g~~~~GiE~yLPlFye~-~~tLfDYLp~~~iii~~-~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~P 327 (1187)
|+.+++|..++|+|+|+|+||++ ++|||||||++++++++ ++....+.+|+.+.+.|+.+ .....++.++|
T Consensus 245 y~~is~g~~~~GiE~ylPLff~e~l~tLfDYLp~~~liv~~~~l~~~~e~~~~~i~~~~e~~-------~~d~~rp~l~p 317 (1148)
T PRK10689 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR-------GVDPMRPLLPP 317 (1148)
T ss_pred HHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCH
T ss_conf 99986689745177860320265423688737777399964189999999999999999864-------67745678997
Q ss_pred HHCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 21169989999975114608962675322224673377641466566820010011222200018589999999999867
Q gi|254780947|r 328 EKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQK 407 (1187)
Q Consensus 328 e~Lyl~~~el~~ll~~~~~ii~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~ 407 (1187)
+.+|++.+++...++.+..+. +...................| ......+....++.+++|.++
T Consensus 318 ~~L~l~~~el~~~L~~~~~i~-l~~~~~~~~~~~~~~~~~~~p----------------~~~~~~~~~~~l~~L~~~i~~ 380 (1148)
T PRK10689 318 ESLWLRVDELFSELKNWPRVQ-LKTEHLPEKAANTNLGFQKLP----------------DLAVQAQQKAPLDALRKFLES 380 (1148)
T ss_pred HHHCCCHHHHHHHHHHCCEEE-EECCCCCCCCCCCCCCCCCCC----------------CCCCCCCCHHHHHHHHHHHHH
T ss_conf 884489999999997477377-521346543456675643276----------------634200002369999999995
Q ss_pred -CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCC--CCEEEEECCCCCCCCCCC
Q ss_conf -98299995894589999986776488733234522455204668479998104468746--656887120013731112
Q gi|254780947|r 408 -GIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFET--KHMILVTETDLLGKKIAR 484 (1187)
Q Consensus 408 -g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF~~--~kl~vITE~EIFG~k~~~ 484 (1187)
+.+|+++|.|++++++|.++|.++++.+....+ +.+ .......++++++++||.+ .+++||||+||||++..+
T Consensus 381 ~~~~vi~~~~s~g~re~L~elL~~~~i~~~~i~~-~~~---~~~~~~~l~i~~l~~GF~~~~~~lavITE~eIfG~r~~r 456 (1148)
T PRK10689 381 FDGPVVFSVESEGRREALGELLARIKIAPKRIMR-LDE---ASDRGRYLMIGAAEHGFIDTVRNLALICESDLLGERVAR 456 (1148)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCC-HHH---CCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHCHHHHC
T ss_conf 6982999968878999999999876998634166-656---256864999833445641466757998658851304321
Q ss_pred CCCCCCC-C-CCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHH-CCC
Q ss_conf 2122222-2-211012244403235112035542331123101456666635999986998799666752111100-367
Q gi|254780947|r 485 RVVRKKN-V-HAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRY-STE 561 (1187)
Q Consensus 485 r~~rkk~-~-~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskY-g~~ 561 (1187)
+++++++ . ....+.++++|++||||||++||||||.||++++++|+.+|||+|+|||||||||||+||++|||| |++
T Consensus 457 rr~~~rk~~~~~~~i~~l~eL~~GDyVVH~dHGIGrY~GL~~iev~G~~~DyL~LeYa~~DkLYVPVeqL~lIsKY~G~~ 536 (1148)
T PRK10689 457 RRQDSRRTINPDTLIRNLAELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 (1148)
T ss_pred CCHHHCCCCCHHHHHHHHHHCCCCCEECCCCCCEEEEECCEEEEECCCCCCEEEEEECCCCEEEEEHHHHCCEEECCCCC
T ss_conf 32010023571543213876788986221125756760418984088222259999769986985679822142114899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 88853234340348999999999999999999999998874015677878467898998488888744899999998760
Q gi|254780947|r 562 ITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDL 641 (1187)
Q Consensus 562 ~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dm 641 (1187)
+++|+||||||++|+|+|+||||+|+|||+|||+|||+|++.+||+|+||++||+|||++|||+|||||++||+||++||
T Consensus 537 ~~~p~LdKLGg~~W~k~K~Kakk~i~diA~eLl~lYA~R~~~~G~af~~d~~~~~eFe~~FpyeET~DQl~AI~eV~~DM 616 (1148)
T PRK10689 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM 616 (1148)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98876110256258999999999999999999999998720568867898499999996099978768999999998776
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 59885414431665432489999999875112754999824366555899999986067898335410666302567777
Q gi|254780947|r 642 SSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHK 721 (1187)
Q Consensus 642 es~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~ 721 (1187)
+|++||||||||||||||||||||||||||++||||||||||||||+|||+||++||++|||+|++||||+|+||||+|+
T Consensus 617 es~~PMDRLiCGDVGfGKTEVA~RAAFkav~~gkQVavlvPTTiLA~QH~~tF~~Rf~~~pv~i~~LsRf~s~ke~~~i~ 696 (1148)
T PRK10689 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQIL 696 (1148)
T ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 38867741567688887799999999999963980899836622379999999987641573377503888899999999
Q ss_pred HHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEE
Q ss_conf 53122576089852065427852023656997222330088899886316788489995353408899997122254122
Q gi|254780947|r 722 KSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLI 801 (1187)
Q Consensus 722 ~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i 801 (1187)
++|++|+|||||||||||||||+|||||||||||||||||+|||+||++|+||||||||||||||||||||+|+||||+|
T Consensus 697 ~~l~~G~idIvIGTH~ll~~dv~f~~LGLlIiDEEqrFGV~~KE~lk~l~~~vdvLtltATPIPRTL~msl~G~rdlS~i 776 (1148)
T PRK10689 697 AEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII 776 (1148)
T ss_pred HHHHCCCCCEEEHHHHHHCCCCCCCCCCEEEECCCHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEE
T ss_conf 99866998776204888669865466643786010213799999997228998789762556446999988077330221
Q ss_pred ECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 01578877537999857978989999989871885999826446928899999861654648886134674789999999
Q gi|254780947|r 802 SMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNA 881 (1187)
Q Consensus 802 ~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~ 881 (1187)
+|||.+|+||+|||.+||+.+||+||+||+.||||||||||||++|+.++++|++|||+|||+||||||++++||++|.+
T Consensus 777 ~tpP~~R~~v~T~v~~~~~~~i~eai~re~~rggq~~~~~~~~~~i~~~~~~~~~~~p~~~~~~~hg~m~~~~~e~~m~~ 856 (1148)
T PRK10689 777 ATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 (1148)
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 36999898708998358729999999999981880899953254199999999974877718999899998999999999
Q ss_pred HHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 96388757976102003633223326676250235886045532210356767369999668888898899999999972
Q gi|254780947|r 882 FYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 882 F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
|++|++|||||||||||||||||||||||+|||+||||||||||||||||++||||||+||+++.||++|+|||+||++|
T Consensus 857 f~~~~~~~l~~ttiie~g~dip~ant~ii~~a~~~gl~ql~qlrgrvgr~~~~ayaYll~~~~~~lt~~A~kRL~ai~~~ 936 (1148)
T PRK10689 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1148)
T ss_pred HHCCCCCEEEECCEEECCCCCCCCCEEEEECHHHCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 97599889998978765866778847999753214557777543655778870799998678777898999999999970
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCEEECCCCCCCCHHH
Q ss_conf 55652489999998511630004611155389833899999999999998288876766---665256548851167343
Q gi|254780947|r 962 NTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVES---DWSPQVLIEASVMIPESY 1038 (1187)
Q Consensus 962 ~~lGsGf~iA~~DleiRGaG~llG~~QsG~i~~vG~~ly~~ml~~av~~~kg~~~~~~~---~~~~~i~~~~~~~ip~~y 1038 (1187)
++|||||+||||||||||||||||++|||||++|||||||+||+|||+++||++.+..+ ..+|+||++++||||++|
T Consensus 937 ~~lGsGf~iA~~DLeIRGaG~lLG~~QsG~i~~vG~~lY~~mL~~av~~lk~~~~~~~~~~~~~~~~i~l~~~a~iP~~Y 1016 (1148)
T PRK10689 937 EDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 (1148)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHH
T ss_conf 67764399999877227785678864563155506999999999999998667877643345667059548776389465
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCC
Q ss_conf 89988899999987508998999999999776248898899999999999999998697599960985999963888889
Q gi|254780947|r 1039 VSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSN 1118 (1187)
Q Consensus 1039 i~d~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~~~~~l~~~~~lk~~~~~~~i~~i~~~~~~~~~~f~~~~~~~ 1118 (1187)
|+|..+||.+||||+++++.+|++++.+||+||||++|++|+|||.+++||++|+++||.+|+.+++++.++|.+++++|
T Consensus 1017 i~d~~~rl~~Ykri~~~~~~~~~~~~~~El~DRfG~lP~~~~~L~~~~~lk~~~~~~gi~~i~~~~~~~~~~f~~~~~~~ 1096 (1148)
T PRK10689 1017 IPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGFIEFAEKNHVD 1096 (1148)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCC
T ss_conf 69978999999998609999999999999997669997899999999999999997597189606970799966899999
Q ss_pred HHHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999837880999189816999718998899999999999999863
Q gi|254780947|r 1119 PEALLQYIAQQKGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMT 1168 (1187)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 1168 (1187)
|++|++|+|+++++++++|+++|+|...+++.+.|+..+.++|+.|+..+
T Consensus 1097 ~~~l~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~l~~~~ 1146 (1148)
T PRK10689 1097 PAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 (1148)
T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999848884898899637998279998999999999999999864
No 2
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=0 Score=3047.97 Aligned_cols=1119 Identities=42% Similarity=0.719 Sum_probs=1043.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHH
Q ss_conf 860898037652279999999862-9989999299899999999999857998099857224670100489989999999
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIARL-GLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRL 93 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~~~-~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl 93 (1187)
..+..++|++++++|+++|.+++. ..+.++||+|..+|..++++|. +.++.+|++||+||++|||.+||+.+++++|+
T Consensus 9 ~~~~~l~gl~~~~~a~~~a~l~~~~~~~~~~vt~~~~~a~~l~~~L~-~~~~~~v~~~P~~e~lpyd~~sp~~d~~~~Rl 87 (1139)
T COG1197 9 GDPLLLGGLSGGAKALLIAALAEEKPNPVLLVTADLQEADRLAEDLR-FFPDQPVLLLPDWETLPYDRFSPSQDIVSSRL 87 (1139)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH-HCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 77557506781367999999986368882899589999999999998-57887358777744565644688704799999
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCE
Q ss_conf 99999841244688769995667852369986688515489940974199999999998288455452178316545747
Q gi|254780947|r 94 SCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGI 173 (1187)
Q Consensus 94 ~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgI 173 (1187)
++|++|.... ..|+|++++||++++||++++..+++.+++|+++|++.|..+|+.+||+||++|.++||||+||||
T Consensus 88 ~~L~~L~~~~----~~i~v~~~~all~~lpp~~~~~~~~l~l~~G~~~d~~~l~~~L~~~GY~~v~~V~~~GEfsvRG~I 163 (1139)
T COG1197 88 EALRRLAQGK----KGIVVVPVNALLQKLPPPDFLEENSLTLKVGEELDLDDLEARLVRAGYERVDMVMEPGEFAVRGGI 163 (1139)
T ss_pred HHHHHHHCCC----CCEEEEEHHHHHHHCCCHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEECCCE
T ss_conf 9999987279----988998879953346996676335389624872689999999998097003320245624511654
Q ss_pred EEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCHHHCHHHHHH
Q ss_conf 57306988872688634872210154513748531222169994377321799999999999997417370015777899
Q gi|254780947|r 174 LDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAI 253 (1187)
Q Consensus 174 IDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i~~fr~~~r~~f~~~~~~~~i~e~I 253 (1187)
||||||+++.|||||||||||||||.|||+||||+++++++.|+|++|++++++.++.|+.+|+..| .....+.+|+.+
T Consensus 164 lDIfp~~~e~P~RieffgdeIesIR~Fd~~tQrS~~~v~~i~l~Pa~e~~l~~~~~~~~~~~~~~~f-~~~~~~~~~~~~ 242 (1139)
T COG1197 164 LDIFPPGSEEPYRIEFFGDEIESIRSFDPETQRSLEEVEEIELLPASEFILDEEAIEAFRKQYLETF-EPKRDDALYEAL 242 (1139)
T ss_pred EEECCCCCCCCEEEEECCCCEEEEECCCHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCCCCHHHHHHH
T ss_conf 7860489888679996587010245258565145245544997462114669789999999887640-566423789998
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
Q ss_conf 778987887776777614876767334676133-4653589999889999999899999865222026556785021169
Q gi|254780947|r 254 SQGRRYPGMEHWLPFFYQSMETIFPYLSEFCII-TDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYL 332 (1187)
Q Consensus 254 s~g~~~~GiE~yLPlFye~~~tLfDYLp~~~ii-i~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl 332 (1187)
++|..++|+|+|+|+||++++|+|||||+++.+ +++.+.+....++....++|+++.... .+++++|+.+|+
T Consensus 243 ~~g~~~~g~e~~lplfy~~~~~l~dylp~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~l 315 (1139)
T COG1197 243 SSGRRFAGLEYFLPLFYEDLATLFDYLPKNTLIVVDERVLEAAEEFEKEVADFYEARLSDG-------EYPPLPPEALYL 315 (1139)
T ss_pred HCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCHHHHHC
T ss_conf 5589854289876877545078998556688176656678999999888999999773145-------567888376315
Q ss_pred CHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHH----HHHHHHHHHHHCC
Q ss_conf 989999975114608962675322224673377641466566820010011222200018589----9999999998679
Q gi|254780947|r 333 NYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFD----KFLSHVAQQAQKG 408 (1187)
Q Consensus 333 ~~~el~~ll~~~~~ii~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~----~L~~~I~~~~k~g 408 (1187)
+.+++...+.....+ .+..+........... ++...+..++.++.. .+.+++..|...
T Consensus 316 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~~~~~f~~q~~~~~~~l~~~i~~~~~~- 377 (1139)
T COG1197 316 SAEELFELLKPVPRI-SLFPEHLPELSAEEII----------------NLDPLPDLAFFGQHKEPLDALRKEIERFRGG- 377 (1139)
T ss_pred CHHHHHHHHCCCCCC-CCCCCCCCCCCHHHCC----------------CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCC-
T ss_conf 799998874344200-2343345431021024----------------4343411333212312779999999984468-
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCC--EEEEECCCCCCCCCCCCC
Q ss_conf 829999589458999998677648873323452245520466847999810446874665--688712001373111221
Q gi|254780947|r 409 IKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKH--MILVTETDLLGKKIARRV 486 (1187)
Q Consensus 409 ~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF~~~k--l~vITE~EIFG~k~~~r~ 486 (1187)
|+|+++++++++++|+.++|.++++++.. .+.+.... .+.+.+.+++|++||..+. ++||||+||||.+..+++
T Consensus 378 ~~v~~~a~~~~~~erl~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~~GF~~~~~~l~vItE~el~g~r~~~~~ 453 (1139)
T COG1197 378 YKVIILAESEGRRERLLELLAEHDIPPQK-VDRLDEAK---KGEVYIAVGPLESGFILPDEKLAVITESELLGSRVKRRR 453 (1139)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCC-CCHHHHCC---CCCEEEEECCHHCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 53999965765589999999747998434-76233214---563378630020261048851899963686656765556
Q ss_pred C-CCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHH-CCCCCC
Q ss_conf 2-22222211012244403235112035542331123101456666635999986998799666752111100-367888
Q gi|254780947|r 487 V-RKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRY-STEITT 564 (1187)
Q Consensus 487 ~-rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskY-g~~~~~ 564 (1187)
+ +++..+...+.++++|++||||||.+||||||.||++++++|..+|||+|+|||+|||||||+|+|+|||| |+++++
T Consensus 454 ~~k~~~~~~~~i~~~~eL~~Gd~VVH~~HGIGrflgl~tl~~~g~~~dyL~l~Ya~~dkLyVPVeql~lisrY~g~~~~~ 533 (1139)
T COG1197 454 RRKRRKKNATRIKDLAELKPGDYVVHIDHGIGRFLGLETLEVGGIERDYLELEYAGEDKLYVPVEQLHLISRYVGASDEA 533 (1139)
T ss_pred HHHHHHCCHHHHCCHHHCCCCCEEEECCCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCC
T ss_conf 65542010132214543788984775157713442048986188763148999769973897777856776446899887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 53234340348999999999999999999999998874015677878467898998488888744899999998760598
Q gi|254780947|r 565 VTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSG 644 (1187)
Q Consensus 565 p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~ 644 (1187)
|+||||||++|+|+|+||+++|+|+|+|||+|||+|++.+||+|+||++||.+||++|||+|||||++||+||++||+|+
T Consensus 534 p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 534 PKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 75423474778999999999999999999999998730568787998589999985499857878999999999886069
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 85414431665432489999999875112754999824366555899999986067898335410666302567777531
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSI 724 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l 724 (1187)
+|||||||||||||||||||||||||||+||||||||||||||||||+||++||++|||+|++||||+|+|||++|+++|
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred CCCHHEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 86610256576875999999999998637974999926078689989999987338982588860557889999999998
Q ss_pred CCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECC
Q ss_conf 22576089852065427852023656997222330088899886316788489995353408899997122254122015
Q gi|254780947|r 725 TEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP 804 (1187)
Q Consensus 725 ~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tp 804 (1187)
++|+|||||||||||||||+|||||||||||||||||+|||+||+||++|||||||||||||||||||+||||||+|+||
T Consensus 694 a~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP 773 (1139)
T COG1197 694 AEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP 773 (1139)
T ss_pred HCCCCCEEEECHHHHCCCCEEECCCEEEEECHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHHHHCCCC
T ss_conf 56984589963176478967704764897443532711789998775057289741788754477777443033111479
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 78877537999857978989999989871885999826446928899999861654648886134674789999999963
Q gi|254780947|r 805 PINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYE 884 (1187)
Q Consensus 805 P~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~ 884 (1187)
|++|+||+|||+|||+.+||+||+||+.||||||||||||++|+.++++|++|||||||+||||||+|++||+||.+||+
T Consensus 774 P~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 774 PEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 98772128887158828999999998715987999943331299999999985984688885258888999999999972
Q ss_pred CCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88757976102003633223326676250235886045532210356767369999668888898899999999972556
Q gi|254780947|r 885 GQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTL 964 (1187)
Q Consensus 885 ~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~l 964 (1187)
|+||||||||||||||||||||||||+|||+||||||||||||||||++||||||+||+.+.||++|+|||+||++|++|
T Consensus 854 g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~L 933 (1139)
T COG1197 854 GEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTEL 933 (1139)
T ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88888988234304767778755889654334578888751654776762899996267554587899999999723323
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHH
Q ss_conf 52489999998511630004611155389833899999999999998288876766665256548851167343899888
Q gi|254780947|r 965 GAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINL 1044 (1187)
Q Consensus 965 GsGf~iA~~DleiRGaG~llG~~QsG~i~~vG~~ly~~ml~~av~~~kg~~~~~~~~~~~~i~~~~~~~ip~~yi~d~~~ 1044 (1187)
||||+||||||||||||||||+||||||++|||+||++||+|||+++||.....+..++++|+++++||||++||+|.++
T Consensus 934 GaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLeeAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d~~~ 1013 (1139)
T COG1197 934 GAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPDDNL 1013 (1139)
T ss_pred CCHHHHHHCCHHCCCCCCCCCCCCCCCHHEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHH
T ss_conf 75178875201004541346754567610122999999999999987367741015887058567777288355447888
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCHHHHHH
Q ss_conf 99999987508998999999999776248898899999999999999998697599960985999963888889899999
Q gi|254780947|r 1045 RLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQ 1124 (1187)
Q Consensus 1045 rl~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~~~~~l~~~~~lk~~~~~~~i~~i~~~~~~~~~~f~~~~~~~~~~~~~ 1124 (1187)
||++||||++++|.+|++++++||+||||++|++|++||.+++||++|.++||.+|+.+.+++.++|..+..++|+++++
T Consensus 1014 rl~~YkRi~~~~s~~el~~i~~EliDRFG~lP~ev~~Ll~i~~lk~la~~lgI~~i~~~~~~~~i~f~~~~~~~~~~l~~ 1093 (1139)
T COG1197 1014 RLELYKRLANAESEEELEEIKEELIDRFGPLPDEVKNLLDIAELKLLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIK 1093 (1139)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99999998746899999999999997558997899999999999999998097253057854899963445658899998
Q ss_pred HHHHCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99837880999189816999718998899999999999999863
Q gi|254780947|r 1125 YIAQQKGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHLINMT 1168 (1187)
Q Consensus 1125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 1168 (1187)
++++++..+++.|+.++.+..++.+..+++..+..+++.|....
T Consensus 1094 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~L~~~~ 1137 (1139)
T COG1197 1094 LLQKQPLKAKLKGDTKLLFIKDLIEPEERLDAVAKLLKALAELA 1137 (1139)
T ss_pred HHHCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 86205623422798467773456789999999999999987521
No 3
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=100.00 E-value=0 Score=2826.43 Aligned_cols=934 Identities=40% Similarity=0.673 Sum_probs=836.0
Q ss_pred HHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCC----EEEECCCCEEEEEEEEE-CCCCCCCCCCCEEEEECCCC--E
Q ss_conf 99828845545217831654574757306988872----68863487221015451-37485312221699943773--2
Q gi|254780947|r 150 LETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYP----VRLDFFGNTIDSLRLFD-SSTQRTIREISIFEINTLSE--V 222 (1187)
Q Consensus 150 Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~P----iRIEFFGDeIESIR~FD-p~TQRSi~~i~~i~I~Pa~E--~ 222 (1187)
|+.+||+|+++|+.+||||+||||||||||+++.| ||||||||+|||||.|| |.||||++++.+++|.||+| +
T Consensus 1 L~~~GY~r~~~V~~~GEFs~RG~I~DIfp~~~~~PntqavRi~ff~D~iesIr~FdP~~~q~~~~~l~~~~l~Pa~e~~i 80 (997)
T TIGR00580 1 LVELGYERVDLVEEEGEFSVRGDILDIFPPGSEAPNTQAVRIEFFGDEIESIREFDPVSDQRSLEELSEITLLPAKELEI 80 (997)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 97432112552010343355150002115778888743689972178576600248813343464234200253010003
Q ss_pred ECCHHHHHHHHHHHHHHCCCCHHH------------CHHHHHHHCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCE----
Q ss_conf 179999999999999741737001------------57778997789878877767776148-7676733467613----
Q gi|254780947|r 223 MLTSQNISRFRENYLANFGTTTQE------------DPLYVAISQGRRYPGMEHWLPFFYQS-METIFPYLSEFCI---- 285 (1187)
Q Consensus 223 il~~e~i~~fr~~~r~~f~~~~~~------------~~i~e~Is~g~~~~GiE~yLPlFye~-~~tLfDYLp~~~i---- 285 (1187)
+++++.+.++.++........... .+.++.+++|....|+|.|+|+||++ +++|+||+|+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~l~~~~~g~~~~G~e~~lPl~~~~G~~~L~D~~~~~t~~~P~ 160 (997)
T TIGR00580 81 LLEEETRARAKQNAARVEDAEKTETDKAKEILAVKILEELEALKEGKKKAGLEKFLPLFFEDGLSSLVDYLPDNTPEAPV 160 (997)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCE
T ss_conf 65666666687788751003576641135454303523578887257744245552502007886411023354789888
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-----HCCCCHHHHHHH-------HHCCCEEEECCCC
Q ss_conf 3465358999988999999989999986522202655678502-----116998999997-------5114608962675
Q gi|254780947|r 286 ITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPE-----KLYLNYQQFDAL-------IQTTHKLVQMTAF 353 (1187)
Q Consensus 286 ii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe-----~Lyl~~~el~~l-------l~~~~~ii~l~~~ 353 (1187)
|+.+++....... ...++.++.+....+...... .+|. ..+++++++... ++.....+.+...
T Consensus 161 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~ehfl~~~~~~~~~l~~~~~veld~~k~~~~~~~l~~~ 235 (997)
T TIGR00580 161 ILLDEPERFHEAA-EELQRELEEFYEALEEAKKLI----NPPSEHFLARLDLSFEELVLEVLVELDRLKTEHKAISLSEV 235 (997)
T ss_pred EEECCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC----CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCHHHH
T ss_conf 9961755654899-999999999998777653067----87213110116773555555553223123111000331233
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 32222467337764146656682001001122220001858999999999986798299995894589999986776488
Q gi|254780947|r 354 NQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF 433 (1187)
Q Consensus 354 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI 433 (1187)
..... ..++.................+.+..+..++-.|.+.|+.+.++++|+++++|+.++|.++++
T Consensus 236 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~ll~~~d~ 303 (997)
T TIGR00580 236 QLESA------------ILSLKASEAIELAQKHSRLEFGEILAFKEELFRWLKAGFKVVLLAESESQAERLKSLLKEYDI 303 (997)
T ss_pred HCCCC------------CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 20335------------557550344663046310245557899999999987498189996376326899999960588
Q ss_pred CCCCCCCCHH-----HHHCCCCCCEEEEEC-CCCCCCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCHHHH
Q ss_conf 7332345224-----552046684799981-044687466--56887120013731112212222222110--1224440
Q gi|254780947|r 434 KKIKKINTLT-----EINSLLKEEIAAVIL-PINQGFETK--HMILVTETDLLGKKIARRVVRKKNVHAQS--FFDSSNI 503 (1187)
Q Consensus 434 ~~~~~~~~~~-----~~~~~~~~~i~i~~~-~L~~GF~~~--kl~vITE~EIFG~k~~~r~~rkk~~~~~~--i~dl~eL 503 (1187)
.+.....+.. ..+...+....++.+ .++.||..+ ++++|||.||||.+.++++.+++.++... +.++.+|
T Consensus 304 ~~~~~~~p~~yP~~~~~~~~~~~~~~~~~g~~~~~gf~~~~~~la~i~~~elf~~r~~~~~~~~~~~~~~~~~i~~~~~L 383 (997)
T TIGR00580 304 AAKVIVEPLEYPALDSSQLLIPAVVYVLEGGELSSGFILPTAGLAVITESELFGSRVKRRPKKKRKKSKLTSKIEDLNEL 383 (997)
T ss_pred CCCCCCCHHCCCCCCHHHHCCHHHHHHCCCCCCCCCEEECCCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 53110020002100235420124553102320135502225547898261467555420146666654333321001037
Q ss_pred CCCCCEEECCCCCEEEECCCC-CCCCCCCCCEEEEEECCCCE-EEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 323511203554233112310-14566666359999869987-99666752111100-3678885323434034899999
Q gi|254780947|r 504 EEGAIIVHAEHGIGRFVRLYS-IEVSGTFHDCLELHYADNAK-LFVPVENIDLISRY-STEITTVTLDKLGGSAWKTRKA 580 (1187)
Q Consensus 504 ~~GDyVVH~dHGIGrY~GLe~-l~v~G~~~DyL~IeYa~~Dk-LYVPv~~l~lIskY-g~~~~~p~L~kLGg~~W~k~K~ 580 (1187)
++||||||.+||||+|.||++ ++++|+.+|||.|+|||+|| |||||||+++|||| |+++++|+||||||++|.|+|+
T Consensus 384 ~~Gd~VVH~~hGIG~F~~l~~~~~~~g~~~DYL~l~Ya~~~k~LyvPve~~~li~rY~G~~~~~p~L~kLGg~~W~~~K~ 463 (997)
T TIGR00580 384 KPGDYVVHKDHGIGKFLGLEKKLKVLGIERDYLVLEYAGEDKKLYVPVEQLDLISRYVGGEGKNPELDKLGGKSWEKTKA 463 (997)
T ss_pred CCCCEEEECCCCCCEEHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99887775335850214223214424765241244402778668603312445533206788976410278388999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHH
Q ss_conf 99999999999999999988740156778784678989984888887448999999987605988541443166543248
Q gi|254780947|r 581 NLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT 660 (1187)
Q Consensus 581 Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKT 660 (1187)
|||++|++||.+||+|||+|++.+||+|++|++||.+||++|||+|||||++||+|||+||++++|||||||||||||||
T Consensus 464 kv~~~v~~iA~~Li~lyA~R~~~~G~af~~D~e~~~~Fe~~FPfeeT~DQ~~AI~eik~Dm~~~~~MDRL~CGDVGfGKT 543 (997)
T TIGR00580 464 KVKKSVKEIAAKLIELYAKRKASKGHAFPPDDEWQAEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKT 543 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH
T ss_conf 99999999999999999987515898898880899999983878897789999999999740689873465245488536
Q ss_pred HHHHHHHHHHHCCC----CEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH
Q ss_conf 99999998751127----54999824366555899999986067898335410666302567777531225760898520
Q gi|254780947|r 661 EIALRAAFIAVMNG----LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH 736 (1187)
Q Consensus 661 EVA~RAafkav~~g----kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH 736 (1187)
|||||||||||+|| |||||||||||||+|||+||++||++|||+|++||||++++|+++|+++||+|+||||||||
T Consensus 544 EVAmRAaFkAv~~gneylKQVavLVPTT~LA~QHf~tf~~RF~~fPv~I~~LSRF~~~~E~~~iL~~la~G~iDI~IGTH 623 (997)
T TIGR00580 544 EVAMRAAFKAVLDGNEYLKQVAVLVPTTILAQQHFETFKERFANFPVTIELLSRFRSAKEKKEILKELASGKIDILIGTH 623 (997)
T ss_pred HHHHHHHHHHHCCCCCEECEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCH
T ss_conf 88887888763387822011689627044277788999997378981687527756737899999997559422663010
Q ss_pred HHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEE
Q ss_conf 65427852023656997222330088899886316788489995353408899997122254122015788775379998
Q gi|254780947|r 737 ALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSIS 816 (1187)
Q Consensus 737 ~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~ 816 (1187)
|||||+|+|||||||||||||||||+|||+||+||++|||||||||||||||||||+||||||+|+|||.||+||+|||+
T Consensus 624 ~lL~k~v~FKdLGLlIiDEEQRFGV~~KE~lK~~~~~VDvLtlsATPIPRTL~MSl~g~RdlS~I~TPP~~R~pv~T~v~ 703 (997)
T TIGR00580 624 KLLQKDVKFKDLGLLIIDEEQRFGVKQKEKLKELKTSVDVLTLSATPIPRTLHMSLSGIRDLSIIATPPEDRLPVRTFVM 703 (997)
T ss_pred HHHCCCEEEECCCCEEEECCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 41278546863864698314348831155530015676567633789605589998755332210578887742488774
Q ss_pred ECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCE
Q ss_conf 57978989999989871885999826446928899999861654648886134674789999999963887579761020
Q gi|254780947|r 817 IFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896 (1187)
Q Consensus 817 ~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIi 896 (1187)
+||+.+||+||+|||.||||||||||||++|+.++..|++|||+|||+||||||.+.|||+||.+|++|+||||||||||
T Consensus 704 ~~~~~~~~~AI~rEL~RgGQvFyv~Nrie~i~~~~~~l~~LVP~arIaiaHGqM~e~eLE~~m~~F~~~~~~vLvcTTII 783 (997)
T TIGR00580 704 EYDDELVREAIRRELLRGGQVFYVHNRIESIEKLKTQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFDVLVCTTII 783 (997)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHH
T ss_conf 27868999999975313981899808813578999999850843267888335684568999998626843301322146
Q ss_pred ECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 03633223326676250235886045532210356767369999668888898899999999972556524899999985
Q gi|254780947|r 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLD 976 (1187)
Q Consensus 897 EsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~Dle 976 (1187)
||||||||||||||+|||+||||||||||||||||+++||||||||+.+.||+.|.|||+||++|++|||||+|||||||
T Consensus 784 E~GIDIPnANTiIi~~AD~FGLaQLYQLRGRVGRs~~~AYAYlL~~~~~~Lt~~A~~RL~ai~~f~eLGaGf~iA~hDlE 863 (997)
T TIGR00580 784 ESGIDIPNANTIIIDRADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDALKRLEAIQEFSELGAGFKIALHDLE 863 (997)
T ss_pred HCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCC
T ss_conf 50564100126868752114703474536312058712689833477400145899999999730113521678863110
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCC--CCEEECCCCCCCCHHHCCCHHHHH
Q ss_conf 116300046111553898338999999999999982--------8887676666--525654885116734389988899
Q gi|254780947|r 977 IRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIK--------GQKDLVESDW--SPQVLIEASVMIPESYVSDINLRL 1046 (1187)
Q Consensus 977 iRGaG~llG~~QsG~i~~vG~~ly~~ml~~av~~~k--------g~~~~~~~~~--~~~i~~~~~~~ip~~yi~d~~~rl 1046 (1187)
|||||||||.||||||++||||||++||+|||+++| +++ +...+. +|+|+|+++||||++||+|..+||
T Consensus 864 IRGaGNLLG~eQSG~I~~vGfdLY~~lL~eAi~~~~~~yraaa~~~~-~~~~e~~~~~~I~L~~~afIP~dYI~~~~~rl 942 (997)
T TIGR00580 864 IRGAGNLLGEEQSGHIESVGFDLYVELLEEAIEELKDDYRAAADGQK-PPKLEEAKEVDIELPYSAFIPDDYIADDELRL 942 (997)
T ss_pred CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 03550012601264065677899999999999998755555421688-41003665634614741148821113189999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999875089989999999997762488988999999999999999986975999
Q gi|254780947|r 1047 SLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMD 1101 (1187)
Q Consensus 1047 ~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~~~~~l~~~~~lk~~~~~~~i~~i~ 1101 (1187)
++||||++|+|.+|+.+|++||+||||++|+|+.+||.+++||++|+++||.+|+
T Consensus 943 ~~YkRi~~~~~~~E~~~i~~El~DRFG~~P~e~~~L~~~a~lK~~a~~l~i~~l~ 997 (997)
T TIGR00580 943 ELYKRIASAETEEEVEKIRDELIDRFGPLPEEVEELLAVARLKLLARKLGIEKLK 997 (997)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9978776226975899999975114678707899999999999999771666689
No 4
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=0 Score=1093.97 Aligned_cols=423 Identities=38% Similarity=0.637 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHH
Q ss_conf 9999999999999---9887401567787846789899848888874489999999876059885414431665432489
Q gi|254780947|r 585 RLEDLAQKLVDIA---AKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTE 661 (1187)
Q Consensus 585 ~v~diA~eLl~ly---A~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTE 661 (1187)
+-.|+=.-.+.+. .+++..+|.++..+..+.++|.+++||+.|+||.+||+||.+||++++||+||+|||||+|||+
T Consensus 214 aFEELf~~QL~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~LPF~LT~~Q~~~~~ei~~dl~~~~~m~rllqGDVGsGKT~ 293 (677)
T PRK10917 214 KFEELFALQLSLLLLRAERRKLAAPPLPADGELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTV 293 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHH
T ss_conf 99999999999999999987326877788769999999809998898899999999987659954277732876788899
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCC
Q ss_conf 99999987511275499982436655589999998606789833541066630256777753122576089852065427
Q gi|254780947|r 662 IALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNP 741 (1187)
Q Consensus 662 VA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~ 741 (1187)
||++|++.|+.+|+|||++|||+|||+|||+||+++|.+++|+|++|++..++++++++++++++|++|||||||+|+|+
T Consensus 294 va~~a~~~~~~~g~q~a~maPTeiLa~Qh~~~~~~~~~~~~i~v~lltg~~~~~~~~~~~~~~~~g~~~i~iGTHal~~~ 373 (677)
T PRK10917 294 VAALAALAAIEAGYQAALMAPTEILAEQHYRNLKKWLEPLGIRVALLTGSLKGKERREILEALASGEADIVIGTHALIQD 373 (677)
T ss_pred HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHC
T ss_conf 99999999998199489987679999999999998776349889984077417789999999857997789730787735
Q ss_pred CCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCH-
Q ss_conf 8520236569972223300888998863167884899953534088999971222541220157887753799985797-
Q gi|254780947|r 742 KITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDP- 820 (1187)
Q Consensus 742 ~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~- 820 (1187)
+|.|+||||+||||+|||||+|+++|++...++|+|+||||||||||.|++.|..|+|+|.++|.+|.||+|+|...++
T Consensus 374 ~v~f~~LglvviDEQHrFGV~QR~~l~~k~~~~~~L~mtATPIPRtla~~~~g~~d~s~i~~~P~~r~~i~T~~~~~~~~ 453 (677)
T PRK10917 374 DVEFHNLGLVIIDEQHRFGVHQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR 453 (677)
T ss_pred CCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECHHHH
T ss_conf 56446665699530577639999999843999729998368843889998735766666677999998726999762568
Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCC--------CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8989999989871885999826446--------92889999986165464888613467478999999996388757976
Q gi|254780947|r 821 LVVRETLMREYYRGGQSFYVCPRLS--------DLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLS 892 (1187)
Q Consensus 821 ~~i~~ai~rEl~RgGQvf~v~nrv~--------~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~ 892 (1187)
..+.++|.+|+.+|+|||||||+|+ +++...+.|++.+|+.+|++.||||+..|.|++|.+|.+|++|||||
T Consensus 454 ~~~~~~i~~~~~~g~q~y~v~p~ieese~~~~~~~~~~~~~l~~~~~~~~v~~~hG~m~~~ek~~~m~~F~~g~~~iLvs 533 (677)
T PRK10917 454 DEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQKALPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVA 533 (677)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999999759928999413112332017779999999984489975998307898789999999998399999998
Q ss_pred CCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 10200363322332667625023588604553221035676736999966888889889999999997255652489999
Q gi|254780947|r 893 TSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLAS 972 (1187)
Q Consensus 893 TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~ 972 (1187)
||+||.|+||||||||||++||+||||||||||||||||++++||||++++ .+++.|++||+++.+.++ ||.||+
T Consensus 534 TtviEvGvdvpna~~mvi~~aerfGlsqLhQLRGRVgRg~~~~~c~l~~~~--~~~~~~~~Rl~~~~~~~d---Gf~iae 608 (677)
T PRK10917 534 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD--PLSETARERLKIMRETND---GFEIAE 608 (677)
T ss_pred CCEEECCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEEECC--CCCHHHHHHHHHHHHHCC---CHHHHH
T ss_conf 989755867888858999770105367887742743678884589998389--999789999999998587---499999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 99851163000461115538983389999--99999999982
Q gi|254780947|r 973 YDLDIRGTGNLLGEEQSGHIREIGFELYQ--KMLEETVASIK 1012 (1187)
Q Consensus 973 ~DleiRGaG~llG~~QsG~i~~vG~~ly~--~ml~~av~~~k 1012 (1187)
+||++||+|++||.+|||.-.=-=.|++. ++|+.|-...+
T Consensus 609 ~Dl~lRg~G~~~G~~QsG~~~f~~adl~~D~~il~~Ar~~A~ 650 (677)
T PRK10917 609 KDLELRGPGELLGTRQSGLPEFKVADLVRDQELLEEARKEAR 650 (677)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHH
T ss_conf 999615885668876669887447408877999999999999
No 5
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=0 Score=982.33 Aligned_cols=393 Identities=37% Similarity=0.646 Sum_probs=375.2
Q ss_pred HHHHHCCCCCCCCH-HHHHHHHH-HCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 88740156778784-67898998-48888874489999999876059885414431665432489999999875112754
Q gi|254780947|r 599 KRAIHSVPPLMVSQ-DLYSQFIK-RFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQ 676 (1187)
Q Consensus 599 ~R~~~~g~~f~~d~-~~~~eFe~-~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQ 676 (1187)
+++...|.++.+++ +.-++|-+ +-||+.|.||.+||.||..||.++.||.|||-||||-|||=||+=|++.|+.+|||
T Consensus 279 ~~~~~~a~~~~~~~~~~l~k~~~~~LPF~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~GYQ 358 (721)
T TIGR00643 279 EKQQFSAPPLNVSENELLEKFLAKSLPFELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESGYQ 358 (721)
T ss_pred HHHCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 54305665110020579999998528887767789999999986147875322211010663899999999999846980
Q ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECH
Q ss_conf 99982436655589999998606789833541066630256777753122576089852065427852023656997222
Q gi|254780947|r 677 VAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEE 756 (1187)
Q Consensus 677 vavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEE 756 (1187)
||++|||=|||+|||++|.+-|++|.|+|+.|.-=.++|+++++++.|++|+|++|||||+|+++.|+|++||||||||.
T Consensus 359 ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef~~L~lVIiDEQ 438 (721)
T TIGR00643 359 VALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEFKRLGLVIIDEQ 438 (721)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99917768999999999999623548578886156678789999999863952057331355452144314774899323
Q ss_pred HHHHHHHHHHHHHCCC-------CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHH-----HHH
Q ss_conf 3300888998863167-------8848999535340889999712225412201578877537999857978-----989
Q gi|254780947|r 757 QHFGVKHKEALKETHT-------GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPL-----VVR 824 (1187)
Q Consensus 757 qrFGV~~Ke~lk~~~~-------~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~-----~i~ 824 (1187)
|||||.|-.+|++.-. ..|+|.||||||||||-|++.|==|+|+|.+=|.+|.||.|++...+.. .|-
T Consensus 439 HRFGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPIPRTLALt~yGDld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~ 518 (721)
T TIGR00643 439 HRFGVEQRKKLREKGQEGSMIGFAPHVLVMTATPIPRTLALTVYGDLDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVY 518 (721)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHH
T ss_conf 35607899999986220688677777646637881478997765000033431685459338998884278877568999
Q ss_pred HHHHHHHHHCCEEEEEECCCCCHHHH---------HHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 99998987188599982644692889---------99998616-546488861346747899999999638875797610
Q gi|254780947|r 825 ETLMREYYRGGQSFYVCPRLSDLEKC---------YTFLQSEV-PELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTS 894 (1187)
Q Consensus 825 ~ai~rEl~RgGQvf~v~nrv~~i~~~---------~~~l~~l~-p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~Tt 894 (1187)
+-|..|+.-|.|||+|||+|+..|.. .+.|++.+ |+.+|++-||+|+++|-|+||..|.+++.|||||||
T Consensus 519 ~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsTT 598 (721)
T TIGR00643 519 EFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVSTT 598 (721)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999983289089996440320047168999999999888612210011330689847899999985215836999976
Q ss_pred CEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEEC--CCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 200363322332667625023588604553221035676736999966--888889889999999997255652489999
Q gi|254780947|r 895 IVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLP--ENRPLTAAAQKRLRILQSLNTLGAGFQLAS 972 (1187)
Q Consensus 895 IiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~--~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~ 972 (1187)
.||-|+|+|||+-|||+||||||||||||||||||||++++||.|+++ =...+++.|++||+++.+-+| ||.||-
T Consensus 599 VIEVGVDVPnAtvMVIe~AeRFGLSQLHQLRGRVGRG~~~SyC~L~~kdei~~p~~~~~~~RL~~~~~~~D---GF~iAE 675 (721)
T TIGR00643 599 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKDEIKNPKSESAKKRLRVMAETLD---GFVIAE 675 (721)
T ss_pred EEEEEEECCCCCEEEEECCCHHHHHHHHHHCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHH
T ss_conf 89998617977278886655103688876350012689750799812532578886468999999851556---067788
Q ss_pred HHHHHCCCCCCCC---CCCCCCHHH
Q ss_conf 9985116300046---111553898
Q gi|254780947|r 973 YDLDIRGTGNLLG---EEQSGHIRE 994 (1187)
Q Consensus 973 ~DleiRGaG~llG---~~QsG~i~~ 994 (1187)
.||++||-||+|| .+||||+.+
T Consensus 676 ~DL~lRGPGd~lGtk~~~QSG~~~~ 700 (721)
T TIGR00643 676 EDLKLRGPGDLLGTKGTKQSGKLPE 700 (721)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 7553258824235888402155667
No 6
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=0 Score=920.77 Aligned_cols=413 Identities=38% Similarity=0.623 Sum_probs=387.9
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999887401567787846789899848888874489999999876059885414431665432489999999875112
Q gi|254780947|r 594 VDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN 673 (1187)
Q Consensus 594 l~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~ 673 (1187)
....++++...|.+++++....++|-++-||+.|.+|.++|+||..||.|+.||.|||-||||-|||=||+=|++.|+.+
T Consensus 231 ~~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~ 310 (677)
T COG1200 231 LLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA 310 (677)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999875226888886479999999858997678999999999866448666678752676777899999999999872
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf 75499982436655589999998606789833541066630256777753122576089852065427852023656997
Q gi|254780947|r 674 GLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII 753 (1187)
Q Consensus 674 gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii 753 (1187)
|+|||++|||-|||+|||++|++.|+++.++|+.|.-..+.|+.+++++++++|++|||||||+|+|++|.|+||||+||
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEECCEEEEEE
T ss_conf 88168866379999999999998766519748986446650679999998747998979972212204504420238997
Q ss_pred ECHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECC-HHHHHHHHHHHH
Q ss_conf 2223300888998863167-88489995353408899997122254122015788775379998579-789899999898
Q gi|254780947|r 754 DEEQHFGVKHKEALKETHT-GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFD-PLVVRETLMREY 831 (1187)
Q Consensus 754 DEEqrFGV~~Ke~lk~~~~-~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~-~~~i~~ai~rEl 831 (1187)
||.|||||.|..+|++.-. +.|+|.||||||||||-|+..|--|.|+|.+=|.+|.||+|++...+ -.-+-+.|+.|+
T Consensus 391 DEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei 470 (677)
T COG1200 391 DEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEI 470 (677)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 25210229999999973789996799957985078898886146301112579899740899964444799999999999
Q ss_pred HHCCEEEEEECCCCCH--------HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf 7188599982644692--------88999998616546488861346747899999999638875797610200363322
Q gi|254780947|r 832 YRGGQSFYVCPRLSDL--------EKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 832 ~RgGQvf~v~nrv~~i--------~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip 903 (1187)
..|.|||||||.|+.- +.+.+.|+...|+.+|++-||+|++.|-+.||.+|.+||+|||||||.||.|+|+|
T Consensus 471 ~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 471 AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
T ss_conf 74997999952535433113654999999999870546367775689867799999999808876899813899523578
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 33266762502358860455322103567673699996688888988999999999725565248999999851163000
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNL 983 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~DleiRGaG~l 983 (1187)
||+-|||++|+||||||||||||||||+++++||+|+|.+. +++.|++||+++.+-+| ||.||.+||++||.|++
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~--~~~~a~~RL~im~~t~D---GF~IAE~DLklRGpGe~ 625 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP--LSEVAKQRLKIMRETTD---GFVIAEEDLKLRGPGEL 625 (677)
T ss_pred CCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC--CCHHHHHHHHHHHHCCC---CCEEHHHHHHCCCCCCC
T ss_conf 87079996543303788887526557887544899996798--77568999998874487---60104656741388654
Q ss_pred CCCCCCCCHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 46111553898338999--99999999998
Q gi|254780947|r 984 LGEEQSGHIREIGFELY--QKMLEETVASI 1011 (1187)
Q Consensus 984 lG~~QsG~i~~vG~~ly--~~ml~~av~~~ 1011 (1187)
||..|||-..=-=.||. .+||+.|=...
T Consensus 626 lG~rQSG~~~f~~Adl~~D~~ile~ar~~a 655 (677)
T COG1200 626 LGTRQSGLPEFRVADLVRDYDILEEARKDA 655 (677)
T ss_pred CCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 687556886547730875699999999999
No 7
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00 E-value=0 Score=492.77 Aligned_cols=547 Identities=18% Similarity=0.269 Sum_probs=423.7
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC------------
Q ss_conf 778876514886089803765227999999-9862998999929989999999999985799809985------------
Q gi|254780947|r 5 SDIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF------------ 71 (1187)
Q Consensus 5 ~~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F------------ 71 (1187)
.+++.+ ..|.+.++|.|++||+|+|.+|. +++.+||.|||+||++-|.|||+||+-|+|++.|.||
T Consensus 20 ~L~~~l-~~G~~~QtLLGvTGsGKTFT~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAY 98 (667)
T TIGR00631 20 KLVEGL-EAGEKEQTLLGVTGSGKTFTMANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAY 98 (667)
T ss_pred HHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 999998-5688714785321486278898999984798499857776799999999863867724525520323787321
Q ss_pred -CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf -7224670100489989999999999998412446887699956678523699866885154899409741999999999
Q gi|254780947|r 72 -PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKL 150 (1187)
Q Consensus 72 -P~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~L 150 (1187)
|..|+.-=...|.+.+|-.-|++|..+|++ .+..|||+|++|+ +.+-.|+.+.+..++|++|+++++++|..+|
T Consensus 99 vP~~DtyIEKdaSINdeIerlR~SAT~SLl~----RrDVIVVASVScI-YGLG~P~~Y~~~~~~l~vG~~~~~~~ll~~L 173 (667)
T TIGR00631 99 VPSKDTYIEKDASINDEIERLRLSATKSLLE----RRDVIVVASVSCI-YGLGSPEEYLKMVLHLEVGKEIDRRELLRRL 173 (667)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEEE-CCCCCCHHHHCCEEEEEECCCCCHHHHHHHH
T ss_conf 4798841304553004676778898886423----7878999875520-6888825564227865407855889999886
Q ss_pred HHCCCEECCCCCCCCEEEEECCEEEEEC-CCCCC-CEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHH
Q ss_conf 9828845545217831654574757306-98887-268863487221015451374853122216999437732179999
Q gi|254780947|r 151 ETNGFQRVNAVYKVGEYAVRGGILDVYE-PTKKY-PVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQN 228 (1187)
Q Consensus 151 v~~GY~Rv~~Ve~~GEFAvRGgIIDIFp-~~~~~-PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~ 228 (1187)
++++|+|.++..+||.|+|||++||||| ..++. ++||||||||||+|+.|||-|...+.++++++|+||++|++..+.
T Consensus 174 V~lqY~RNd~~f~RG~FRvrGDVvEIfP~~~~~~~~~RiEfF~DEie~I~~~dpLtg~~~~~~~~~~ifPA~HyV~p~e~ 253 (667)
T TIGR00631 174 VELQYERNDVDFQRGTFRVRGDVVEIFPAAYEDEFAVRIEFFGDEIERISLVDPLTGEVLRELDSFTIFPASHYVTPEER 253 (667)
T ss_pred HHHCEEECCEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEHHHHCCCCCCHHHHCCCEEEECCCEECCCCHH
T ss_conf 34030571234057712576318986347767772489985255432021205110511100561586054000258047
Q ss_pred HHHHHHHHHHHCCCCHH-----------------HCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCC---CCC
Q ss_conf 99999999974173700-----------------1577789977898788777677761-----4876767334---676
Q gi|254780947|r 229 ISRFRENYLANFGTTTQ-----------------EDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYL---SEF 283 (1187)
Q Consensus 229 i~~fr~~~r~~f~~~~~-----------------~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYL---p~~ 283 (1187)
++.+.+++++.+...-. ....+|++.+-++|.|||||..+|- +.|.|||||| |++
T Consensus 254 ~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIENYSRhl~GR~~GEpP~tLlDYF~gfP~D 333 (667)
T TIGR00631 254 LERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIENYSRHLSGRKPGEPPYTLLDYFIGFPED 333 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 99999999999999999998779517888898868877888750673377000000216777631596477650468865
Q ss_pred CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCC---CCCCCC
Q ss_conf 13346535899998899999998999998652220265567850211699899999751146089626753---222246
Q gi|254780947|r 284 CIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFN---QQETAH 360 (1187)
Q Consensus 284 ~iii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~---~~~~~~ 360 (1187)
.+++.|+.+-..-. +.-.|+.........-.++.+.|.+-++--|.++||.... +++++.|..+ +.+.++
T Consensus 334 fLlviDESHVT~PQ----~~GMY~GD~SRK~~LVeYGFRLPSAlDNRPLkfeEF~~~~---~Q~vyVSATPG~~E~e~S~ 406 (667)
T TIGR00631 334 FLLVIDESHVTLPQ----IGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEERI---NQVVYVSATPGDYELEQSG 406 (667)
T ss_pred EEEEEEECCCCHHH----HHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHC---CCEEEEECCCCHHHHHHHC
T ss_conf 08988402575022----1344130467654332027753001358789879999855---9889996388589997326
Q ss_pred CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 73377641466566820010011222200018589999999999867982999958945899999867764887332345
Q gi|254780947|r 361 NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKIN 440 (1187)
Q Consensus 361 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~ 440 (1187)
..+++--.+|..-..|.. ...+..||++.|+++|+...+.|.||+|++-|+..||.|.++|.++||++.+-.+
T Consensus 407 ~~vvEQiiRPTGLlDP~i-------~VRP~~gQvdDL~~EI~~R~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHS 479 (667)
T TIGR00631 407 GNVVEQIIRPTGLLDPEI-------EVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHS 479 (667)
T ss_pred CCEEEEEECCCCCCCCEE-------EEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 915899873778648836-------8835851588889999999972894899820167788999997058837987145
Q ss_pred CHHH------HHCCCCCCEEEEECC--CCCCCCCCC--EEEEECCCCCCCCCCCC----CC--CCCCCCCCCC-------
Q ss_conf 2245------520466847999810--446874665--68871200137311122----12--2222221101-------
Q gi|254780947|r 441 TLTE------INSLLKEEIAAVILP--INQGFETKH--MILVTETDLLGKKIARR----VV--RKKNVHAQSF------- 497 (1187)
Q Consensus 441 ~~~~------~~~~~~~~i~i~~~~--L~~GF~~~k--l~vITE~EIFG~k~~~r----~~--rkk~~~~~~i------- 497 (1187)
.... +..+..|.+-+++|= |.+|.-.|. |+-|=|.|.=|-=...+ .. .-++.++..+
T Consensus 480 eIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQTIGRAARN~~G~VilYAD~iT 559 (667)
T TIGR00631 480 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKIT 559 (667)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 57899999999984478840886000200246511488997632788899866302788988875257965999728700
Q ss_pred -----------------CCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECC-CCEEEEEHHHHHHHHHHC
Q ss_conf -----------------22444032351120355423311231014566666359999869-987996667521111003
Q gi|254780947|r 498 -----------------FDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYAD-NAKLFVPVENIDLISRYS 559 (1187)
Q Consensus 498 -----------------~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~-~DkLYVPv~~l~lIskYg 559 (1187)
..|++ =.||.-..|.-..+|-+.++... .+.. ....-.|-.
T Consensus 560 ~sM~~AI~ET~RRR~~Q~~YNe----------------~HgItP~ti~K~i~~~~~~~~~~~~~~~-----~~~~~~~~~ 618 (667)
T TIGR00631 560 DSMQKAIEETERRRKIQIAYNE----------------EHGITPQTIRKKIKDILDIELKEKEDAA-----KKKKKGKVA 618 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHCCCCHH
T ss_conf 7899999987888999999997----------------5389788540568887777764445555-----532023112
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6788853234340348999999999999999999
Q gi|254780947|r 560 TEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKL 593 (1187)
Q Consensus 560 ~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eL 593 (1187)
... .+..+++...+.++.=++-.++.++.|++|
T Consensus 619 ~~~-~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l 651 (667)
T TIGR00631 619 EEP-AEDASDLSEKELKKLIKQLEKEMKQAARNL 651 (667)
T ss_pred HHH-HCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 221-031320898799999999999999999752
No 8
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=100.00 E-value=0 Score=427.42 Aligned_cols=456 Identities=18% Similarity=0.271 Sum_probs=362.3
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC-----------
Q ss_conf 778876514886089803765227999999-98629989999299899999999999857998099857-----------
Q gi|254780947|r 5 SDIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP----------- 72 (1187)
Q Consensus 5 ~~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP----------- 72 (1187)
.+++.+ .++.+.++|.|++||+++|.+|. +++.++|.||++||..-|.+||.+++.|+|++.|.||=
T Consensus 24 ~L~~gi-~~g~~~Q~LlGvTGSGKTfTmAnvI~~~~rPtLVlahNKTLAAQLy~Efk~fFP~NaVEYFVSYyDYYQPEAY 102 (657)
T PRK05298 24 ELVEGI-ESGEKHQTLLGVTGSGKTFTMANVIARVQRPTLVLAHNKTLAAQLYGEFKEFFPENAVEYFVSYYDYYQPEAY 102 (657)
T ss_pred HHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 999899-7499636997036785668999999986897599766588999999999976888717998514456697111
Q ss_pred --CCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf --224670100489989999999999998412446887699956678523699866885154899409741999999999
Q gi|254780947|r 73 --AWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKL 150 (1187)
Q Consensus 73 --~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~L 150 (1187)
..|+.-=...|.+.+|..-|+++.++|++ .+..|||+|++|+. .+.+|+.+.+..+.|++|+++++++|..+|
T Consensus 103 ip~tDtYIEKdssIN~eId~lR~sAT~SLl~----RrDVIVVASVSCIY-GLGsPe~Y~~~~l~l~~G~~i~r~~ll~~L 177 (657)
T PRK05298 103 VPSSDTYIEKDSSINEEIERLRLSATKSLLE----RRDVIVVASVSCIY-GLGSPEEYLKMVLHLRVGQEIDRRELLRRL 177 (657)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHHHHC----CCCEEEEEEHHHCC-CCCCHHHHHHCEEEEECCCEECHHHHHHHH
T ss_conf 4788852423634669999999999998854----79869997367616-899979997343777589771799999999
Q ss_pred HHCCCEECCCCCCCCEEEEECCEEEEECCC-CCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHH
Q ss_conf 982884554521783165457475730698-8872688634872210154513748531222169994377321799999
Q gi|254780947|r 151 ETNGFQRVNAVYKVGEYAVRGGILDVYEPT-KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNI 229 (1187)
Q Consensus 151 v~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~-~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i 229 (1187)
+.++|+|.+.+.++|.|.|||++|||||+. .+.++||||||||||+|..|||.|-..+++++++.|+||++++.+++.+
T Consensus 178 V~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~~~IfPAshyVt~~e~l 257 (657)
T PRK05298 178 VELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDRVTIYPASHYVTPRERL 257 (657)
T ss_pred HHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 98287767651168555773664788337777616999995780628999827788352433349981786768997999
Q ss_pred HHHHHHHHHHCCCCHH-----------------HCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCCCCCCEEC
Q ss_conf 9999999974173700-----------------1577789977898788777677761-----48767673346761334
Q gi|254780947|r 230 SRFRENYLANFGTTTQ-----------------EDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYLSEFCIIT 287 (1187)
Q Consensus 230 ~~fr~~~r~~f~~~~~-----------------~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYLp~~~iii 287 (1187)
+.+...+++.+..... ....+|.+.+-++|+|||||..+|- +.|.|||||||++.+++
T Consensus 258 ~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe~P~tLlDYfp~DfLl~ 337 (657)
T PRK05298 258 ERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGEPPPTLLDYFPDDFLLF 337 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 99999999999999999997677798889999988799999982877560121565069998878944887577565999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCCCCC--CCCCCEEE
Q ss_conf 6535899998899999998999998652220265567850211699899999751146089626753222--24673377
Q gi|254780947|r 288 DPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQE--TAHNRVVH 365 (1187)
Q Consensus 288 ~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~~~~--~~~~~~~~ 365 (1187)
.++.+-..-. +...|..........-.++.+.|..-+.--|.++||..... +.++.+..+..- .....++.
T Consensus 338 iDESHvtvPQ----i~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~---q~iyVSATPg~yEl~~s~~vvE 410 (657)
T PRK05298 338 IDESHVTVPQ----IGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVP---QTIYVSATPGDYELEKSGQVVE 410 (657)
T ss_pred ECCCCCCCHH----HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC---CEEEEECCCCHHHHHHCCCEEE
T ss_conf 8321124087----88786231577888987057787233489978899997448---7799956985898873667345
Q ss_pred EEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH--
Q ss_conf 641466566820010011222200018589999999999867982999958945899999867764887332345224--
Q gi|254780947|r 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLT-- 443 (1187)
Q Consensus 366 l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~-- 443 (1187)
.-.+|..-..|. ....+..||++.|+.+|+...++|.||++++-++..+|.|.++|.+.|++..+..+...
T Consensus 411 QiIRPTGLlDP~-------ievrp~~~Qiddl~~ei~~~~~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~ 483 (657)
T PRK05298 411 QIIRPTGLLDPE-------IEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTL 483 (657)
T ss_pred EEECCCCCCCCC-------EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 777788787984-------5996487879999999999963697699995459899999999996798079962666188
Q ss_pred ----HHHCCCCCCEEEEEC--CCCCCCCCCC--EEEEECCCCCCC
Q ss_conf ----552046684799981--0446874665--688712001373
Q gi|254780947|r 444 ----EINSLLKEEIAAVIL--PINQGFETKH--MILVTETDLLGK 480 (1187)
Q Consensus 444 ----~~~~~~~~~i~i~~~--~L~~GF~~~k--l~vITE~EIFG~ 480 (1187)
-+..+..|.+.+++| -|.+|.-.|. ++.|-|.|-=|.
T Consensus 484 eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGF 528 (657)
T PRK05298 484 ERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF 528 (657)
T ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCC
T ss_conf 999999998588875897500220457876135798870685221
No 9
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=412.08 Aligned_cols=455 Identities=18% Similarity=0.281 Sum_probs=362.5
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC-------------
Q ss_conf 78876514886089803765227999999-9862998999929989999999999985799809985-------------
Q gi|254780947|r 6 DIERISEKYCKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF------------- 71 (1187)
Q Consensus 6 ~~~~~~~k~~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F------------- 71 (1187)
+++. .+.+.+.++|.|++||+++|.+|. +++.++|.||++||..-|.+||++++.|+|++.|.||
T Consensus 24 Lv~g-i~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEAYv 102 (663)
T COG0556 24 LVEG-IENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYV 102 (663)
T ss_pred HHHH-HHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 9988-863860258862036883107999999868971998255547999999999768676458886400146851345
Q ss_pred CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 72246701004899899999999999984124468876999566785236998668851548994097419999999999
Q gi|254780947|r 72 PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLE 151 (1187)
Q Consensus 72 P~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv 151 (1187)
|..|+.-=...|.+.+|..-|+++.++|++ .+..|||+|++|+ ..+-.|+.+.+..+.+.+|+++++++|..+|+
T Consensus 103 p~tDtyIEKdasiNdeId~mR~SAt~sLle----R~DVIVVaSVScI-YGlG~P~~y~~~~~~l~vG~~i~~~~ll~~Lv 177 (663)
T COG0556 103 PSTDTYIEKDASINDEIDRLRHSATRSLLE----RRDVIVVASVSCI-YGLGSPEEYLKMMLSLEVGQEIDRRELLRKLV 177 (663)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHHHHHHHC----CCCEEEEEEEEEE-CCCCCHHHHHHHEEEEECCCCCCHHHHHHHHH
T ss_conf 777735753650678999999998887750----4786999987651-04898699875379983577348999999999
Q ss_pred HCCCEECCCCCCCCEEEEECCEEEEECC-CCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHHH
Q ss_conf 8288455452178316545747573069-888726886348722101545137485312221699943773217999999
Q gi|254780947|r 152 TNGFQRVNAVYKVGEYAVRGGILDVYEP-TKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNIS 230 (1187)
Q Consensus 152 ~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~-~~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i~ 230 (1187)
+++|+|.++...+|.|.|||++|||||. ..+.++||||||||||+|+.|||.|-..+++++++.|+|+++++..++.++
T Consensus 178 ~~qY~Rnd~~f~rG~FRvrGDvveIfPa~~~~~~~RieffgDEie~i~~~dpltg~~~~~~~~~~iypashyvt~~~~~~ 257 (663)
T COG0556 178 DLQYERNDVDFQRGTFRVRGDVVEIFPAYYDDEAIRIEFFGDEIERISEFDPLTGQVIGELDRFTIYPASHYVTPRERLE 257 (663)
T ss_pred HHCEEECCCCCCCCCEEEECCEEEECCCCCCCEEEEEEECCCHHHEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHH
T ss_conf 72611145554667158517679972166676059999727530335344456685213455189805633147888999
Q ss_pred HHHHHHHHHCCCCH-----------------HHCHHHHHHHCCCCCCCHHHHHHHHH-----CCCCCCCCCCCCCCEECC
Q ss_conf 99999997417370-----------------01577789977898788777677761-----487676733467613346
Q gi|254780947|r 231 RFRENYLANFGTTT-----------------QEDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFPYLSEFCIITD 288 (1187)
Q Consensus 231 ~fr~~~r~~f~~~~-----------------~~~~i~e~Is~g~~~~GiE~yLPlFy-----e~~~tLfDYLp~~~iii~ 288 (1187)
++..+++..+.... .....+|.+.+-++|.|+|+|..+|- +.|.|||||||++.+++.
T Consensus 258 ~Ai~~Ik~EL~eRl~~~~~~~kllEaqRL~qRT~~DlEMl~e~G~C~GIENYSRhl~gr~~Ge~P~tL~DYfp~d~Ll~I 337 (663)
T COG0556 258 QAIESIKEELEERLKFFEKNNKLLEAQRLEQRTEYDLEMLRETGYCSGIENYSRHLTGRKPGEPPYTLFDYFPDDFLLFI 337 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEE
T ss_conf 99999999999999999877953788888877775399999828776613335650589999579847885884138998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCC---CCCCCCCCEEE
Q ss_conf 535899998899999998999998652220265567850211699899999751146089626753---22224673377
Q gi|254780947|r 289 PLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFN---QQETAHNRVVH 365 (1187)
Q Consensus 289 ~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~---~~~~~~~~~~~ 365 (1187)
++.+...-. +.-.|+...........++.+.|..-+.--|.++||..... +.++.+..+ ..+.+...+..
T Consensus 338 DESHvTvPQ----i~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~---q~i~VSATPg~~E~e~s~~~vve 410 (663)
T COG0556 338 DESHVTVPQ----IGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIP---QTIYVSATPGDYELEQSGGNVVE 410 (663)
T ss_pred ECCCCCHHH----HHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC---CEEEEECCCCHHHHHHCCCCEEE
T ss_conf 244465076----53201333788888987157686111379977799997459---77999789974877745584268
Q ss_pred EEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHH-
Q ss_conf 6414665668200100112222000185899999999998679829999589458999998677648873323452245-
Q gi|254780947|r 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTE- 444 (1187)
Q Consensus 366 l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~- 444 (1187)
.-.+|..-..|. ....+..|+++.|+++|+...+.|.||++++-++..+|.|.++|.+.|++..+..+....
T Consensus 411 QiIRPTGLlDP~-------ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTl 483 (663)
T COG0556 411 QIIRPTGLLDPE-------IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTL 483 (663)
T ss_pred EEECCCCCCCCC-------EEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 872477888985-------2651487747899999999996497299984368889999999986696478642440389
Q ss_pred -----HHCCCCCCEEEEEC--CCCCCCCCC--CEEEEECCCCCCC
Q ss_conf -----52046684799981--044687466--5688712001373
Q gi|254780947|r 445 -----INSLLKEEIAAVIL--PINQGFETK--HMILVTETDLLGK 480 (1187)
Q Consensus 445 -----~~~~~~~~i~i~~~--~L~~GF~~~--kl~vITE~EIFG~ 480 (1187)
+..+..|.+.+++| -|.+|.-.| .++-|-|.|.=|.
T Consensus 484 ER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGF 528 (663)
T COG0556 484 ERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF 528 (663)
T ss_pred HHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCC
T ss_conf 999999997577874898501331347886455798860685444
No 10
>KOG0344 consensus
Probab=100.00 E-value=1.3e-37 Score=308.55 Aligned_cols=389 Identities=19% Similarity=0.181 Sum_probs=313.8
Q ss_pred CCCHHHHCCCCCEEECCCCCEEEECCCCCCC----------CCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCC
Q ss_conf 1224440323511203554233112310145----------666663599998699879966675211110036788853
Q gi|254780947|r 497 FFDSSNIEEGAIIVHAEHGIGRFVRLYSIEV----------SGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVT 566 (1187)
Q Consensus 497 i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v----------~G~~~DyL~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~ 566 (1187)
+..|.+| .+||++|-.- |+++.++.--.- =...+|.+.=.--|.+|.| ..++ |-
T Consensus 131 l~~f~~l-t~~~~~~~~l-l~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtl--af~~------------Pi 194 (593)
T KOG0344 131 LLSFSDL-TYDYSMNKRL-LENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTL--AFNL------------PI 194 (593)
T ss_pred CCCCCCC-CHHHHHCHHH-HHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCHH--HHHH------------HH
T ss_conf 3453211-1043214899-97676278888773100115666413305886357886205--6556------------99
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHCCCCC
Q ss_conf 23434034899999999999999999999999887401567787846789899848888874489999-99987605988
Q gi|254780947|r 567 LDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAI-DAVIQDLSSGR 645 (1187)
Q Consensus 567 L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI-~eV~~Dmes~~ 645 (1187)
|.+|-.-.-. |-+..++.+--...+.+|.+--.+.+.|+.| +.-.-+.+.|||.-+|+|-.|- .+.+.|+.-..
T Consensus 195 l~~L~~~~~~----~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~-~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~T 269 (593)
T KOG0344 195 LQHLKDLSQE----KHKVGLRALILSPTRELAAQIYREMRKYSID-EGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIST 269 (593)
T ss_pred HHHHHHHHCC----CCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHCC
T ss_conf 9999875203----5765427888444499999999999855777-7875345516666531103324677788788618
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHC
Q ss_conf 54144316654324899999998751127549998243665558999999860678983354106663025677775312
Q gi|254780947|r 646 LMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSIT 725 (1187)
Q Consensus 646 PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~ 725 (1187)
||+ |||++|+|||++|+|+.+--|.+ .+--++-| +.++.||+.-+..++++ -|.++++| +..+.+..+..+-.+
T Consensus 270 P~r--i~~~~~~~~~~idl~~V~~lV~d-EaD~lfe~-~~f~~Qla~I~sac~s~-~i~~a~FS-at~~~~VEE~~~~i~ 343 (593)
T KOG0344 270 PMR--IVGLLGLGKLNIDLSKVEWLVVD-EADLLFEP-EFFVEQLADIYSACQSP-DIRVALFS-ATISVYVEEWAELIK 343 (593)
T ss_pred HHH--HHHHHCCCCCCCHHHEEEEEEEC-HHHHHHCH-HHHHHHHHHHHHHHCCC-CHHHHHHH-CCCCHHHHHHHHHHH
T ss_conf 799--99985589753201203567664-68765081-56999999999985285-22256632-146077999999865
Q ss_pred CCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCC
Q ss_conf 25760898520654278520236569972223300888998863167884899953534088999971222541220157
Q gi|254780947|r 726 EGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPP 805 (1187)
Q Consensus 726 ~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP 805 (1187)
.+-+-|+||+|-.. +..||+|++||+++++|+=++|.-|+.. ++|
T Consensus 344 ~~~~~vivg~~~sa----------~~~V~QelvF~gse~~K~lA~rq~v~~g-------------------------~~P 388 (593)
T KOG0344 344 SDLKRVIVGLRNSA----------NETVDQELVFCGSEKGKLLALRQLVASG-------------------------FKP 388 (593)
T ss_pred CCCEEEEEECCHHH----------HHHHHHHHEEEECCHHHHHHHHHHHHCC-------------------------CCC
T ss_conf 05336898425257----------6554555121104345778899998615-------------------------899
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 88775379998579789899999898718859998264469288999998616546488861346747899999999638
Q gi|254780947|r 806 INRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEG 885 (1187)
Q Consensus 806 ~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~ 885 (1187)
..+.+||+ +.|++|+|++-. +.++.+|+|+||.-+..+.|.+|..|-.|
T Consensus 389 P~lIfVQs-----------------~eRak~L~~~L~--------------~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344 389 PVLIFVQS-----------------KERAKQLFEELE--------------IYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred CEEEEEEC-----------------HHHHHHHHHHHH--------------HCCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 74898853-----------------888999999864--------------23576634676366666778999998506
Q ss_pred CCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 87579761020036332233266762502358860455322103567673699996688888988999999999725565
Q gi|254780947|r 886 QYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLG 965 (1187)
Q Consensus 886 ~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lG 965 (1187)
+++||+||-+++.|||+-|+|++|.+|--.+++|++||+ ||+||..+.+-||.+|++ .+..||.+|.+.-..
T Consensus 438 ~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrI-GRtgRag~~g~Aitfytd------~d~~~ir~iae~~~~- 509 (593)
T KOG0344 438 KIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRI-GRTGRAGRSGKAITFYTD------QDMPRIRSIAEVMEQ- 509 (593)
T ss_pred CEEEEEEHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHH-HCCCCCCCCCCEEEEECC------CCCHHHHHHHHHHHH-
T ss_conf 706888504665455645763689537872247888873-025788988616998632------553455568999997-
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 248999999851163000461
Q gi|254780947|r 966 AGFQLASYDLDIRGTGNLLGE 986 (1187)
Q Consensus 966 sGf~iA~~DleiRGaG~llG~ 986 (1187)
|||.++.++|.|++-+.+-+.
T Consensus 510 sG~evpe~~m~~~k~~~~~kk 530 (593)
T KOG0344 510 SGCEVPEKIMGIKKLSRLKKK 530 (593)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 188633999865666655555
No 11
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.2e-30 Score=254.84 Aligned_cols=340 Identities=26% Similarity=0.306 Sum_probs=271.7
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 48888874489999999876059885414431665432489999999875112754999824366555899999986067
Q gi|254780947|r 621 RFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 621 ~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
.-+...|++|.+|++++.+ ....++ -|+.|.-|-|||||-++++-++...||||.+|||+-=|+.|-++-|++||
T Consensus 164 ~~~~~L~~eQ~~a~~~i~~-~~~~~~--~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~f-- 238 (699)
T PRK05580 164 TEPPTLNEEQAAALAAIRA-AGGFSA--FLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARF-- 238 (699)
T ss_pred CCCCCCCHHHHHHHHHHHH-CCCCCC--EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH--
T ss_conf 6787889999999999985-588871--78747898607999999999999739978999176787899999999870--
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHH----------HHHHHHHHHHHHC
Q ss_conf 898335410666302567777531225760898520654278520236569972223----------3008889988631
Q gi|254780947|r 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQ----------HFGVKHKEALKET 770 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEq----------rFGV~~Ke~lk~~ 770 (1187)
|.+|.++.--.|++|..++...+.+|+++|||||..-+= .-|+||||+|||||| ||-++.=-.++.-
T Consensus 239 -g~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF--aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~ 315 (699)
T PRK05580 239 -GARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF--APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAK 315 (699)
T ss_pred -CCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE--CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf -995799648898579999999997699719997360110--65789848999736545444666876119999999999
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCC-CCCCCEEEEEEEC---------CHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 67884899953534088999971222541220157-8877537999857---------9789899999898718859998
Q gi|254780947|r 771 HTGVHVLTLSATPIPRTLQLAITGVRELSLISMPP-INRIACRTSISIF---------DPLVVRETLMREYYRGGQSFYV 840 (1187)
Q Consensus 771 ~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP-~~R~~v~T~v~~~---------~~~~i~~ai~rEl~RgGQvf~v 840 (1187)
..++-++--||||==.|++.+..|--.+-.+.... ...+|--..|--. =...+.++|+.-|.+|.||...
T Consensus 316 ~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~~~P~v~ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~qvll~ 395 (699)
T PRK05580 316 QEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAAALPRVEIIDMREEPLERGAGLSPPLLEAIREALERGEQVLLF 395 (699)
T ss_pred HHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 84998896168999999999975997664465322347898379335421410025754699999999999738847999
Q ss_pred ECCCC------------------------------------------------------------CHHHHHHHHHHHCCC
Q ss_conf 26446------------------------------------------------------------928899999861654
Q gi|254780947|r 841 CPRLS------------------------------------------------------------DLEKCYTFLQSEVPE 860 (1187)
Q Consensus 841 ~nrv~------------------------------------------------------------~i~~~~~~l~~l~p~ 860 (1187)
.||-. +.++++++|++++|+
T Consensus 396 lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~ 475 (699)
T PRK05580 396 LNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPG 475 (699)
T ss_pred ECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 54775225147453199456567898634206898332264688365755465679975241116859999999977899
Q ss_pred CCEEEEECCC--CHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC-----------CCHHHHHHHH
Q ss_conf 6488861346--74789999999963887579761020036332233266762502358-----------8604553221
Q gi|254780947|r 861 LKIAMAHGQM--SPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG-----------LAQLYQLRGR 927 (1187)
Q Consensus 861 ~~i~vaHGqm--~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G-----------LaqlyQlrGR 927 (1187)
++|....+-. +...+++++.+|.+|+.||||-|-+|--|.|.||....+|-+||.+= +..|.|.=||
T Consensus 476 ~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagr 555 (699)
T PRK05580 476 ARVLRIDRDTTRRKGALEQLLEDFARGEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGR 555 (699)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98899847556786316889999746898789777334556777762699873226535488834799999999999876
Q ss_pred CCCCCCCCEEEEE-ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 0356767369999-668888898899999999972556524899999985116
Q gi|254780947|r 928 VGRSKIASFALFL-LPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRG 979 (1187)
Q Consensus 928 VGRs~~~ayayl~-~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~DleiRG 979 (1187)
+||+.+.+-.++- +.++.. =++++.+.+ -...+.+.|+.|=
T Consensus 556 agr~~~~g~viiQt~~p~~~-------~~~~l~~~d----~~~f~~~el~~R~ 597 (699)
T PRK05580 556 AGRAEKPGEVLIQTYEPEHP-------LLQALLRWD----YDAFAEAELAERR 597 (699)
T ss_pred HCCCCCCCEEEEEECCCCCH-------HHHHHHHCC----HHHHHHHHHHHHH
T ss_conf 55678898799993799989-------999999689----9999999999999
No 12
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=7.6e-26 Score=217.91 Aligned_cols=327 Identities=25% Similarity=0.300 Sum_probs=275.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 78784678989984888887448999999987605988541443166543248999999987511275499982436655
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
-+++..|...++..=+...+++|..|.+.+.... ...--=|+-|.-|-|||||=+.|+-++...||||-||||--=|-
T Consensus 181 ~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~--~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Lt 258 (730)
T COG1198 181 EPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSL--GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALT 258 (730)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 6777522346565431103889999999999750--56665367677788589999999999997598799995653456
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHH----
Q ss_conf 5899999986067898335410666302567777531225760898520654278520236569972223300888----
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKH---- 763 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~---- 763 (1187)
.|-.+-|+.||. .+|++|+-=-|+.|..++-.+..+|++.|||||-.-|- .-|+||||+||||||----||
T Consensus 259 pq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 259 PQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHHHHHHHHC---CCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC--CCHHHCCEEEEECCCCCCCCCCCCC
T ss_conf 999999999867---87453146579278999999985597159997122330--7231257699702456432477777
Q ss_pred ------HHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC-CCE------EEEEEECC---HHHHHHHH
Q ss_conf ------998863167884899953534088999971222541220157887-753------79998579---78989999
Q gi|254780947|r 764 ------KEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR-IAC------RTSISIFD---PLVVRETL 827 (1187)
Q Consensus 764 ------Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R-~~v------~T~v~~~~---~~~i~~ai 827 (1187)
=--++.-..++-|+-=||||==-|++-+.+|.....++..-..+= .|- +..-.+.+ ....-++|
T Consensus 334 rYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 334 RYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 76789999999886099889826887789998665385589970354555678762587356665546775799999999
Q ss_pred HHHHHHCCEEEEEECCCC------------------------------------------------------------CH
Q ss_conf 989871885999826446------------------------------------------------------------92
Q gi|254780947|r 828 MREYYRGGQSFYVCPRLS------------------------------------------------------------DL 847 (1187)
Q Consensus 828 ~rEl~RgGQvf~v~nrv~------------------------------------------------------------~i 847 (1187)
..-+.||-||-..-||-. +.
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 99984298689997167765400425689802489999512786479806707799989988779899997369964619
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC--HHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC-C-------
Q ss_conf 889999986165464888613467--478999999996388757976102003633223326676250235-8-------
Q gi|254780947|r 848 EKCYTFLQSEVPELKIAMAHGQMS--PKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF-G------- 917 (1187)
Q Consensus 848 ~~~~~~l~~l~p~~~i~vaHGqm~--~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~-G------- 917 (1187)
+++++.|++++|++||..--+-.. ...+|..+.+|-+|++||||-|-+|--|.|.||.....|-+||.. +
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAs 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHH
T ss_conf 99999999878999479984666664356899999975799886634166642788666318999963143158884357
Q ss_pred ---CCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf ---860455322103567673699996
Q gi|254780947|r 918 ---LAQLYQLRGRVGRSKIASFALFLL 941 (1187)
Q Consensus 918 ---LaqlyQlrGRVGRs~~~ayayl~~ 941 (1187)
+..|.|.=||.||.++.+=..+-+
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 899999999975532678898699996
No 13
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=1.5e-21 Score=184.88 Aligned_cols=338 Identities=19% Similarity=0.185 Sum_probs=250.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC-------CCCEEEE
Q ss_conf 778784678989984888887448999999987605988541443166543248999999987511-------2754999
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM-------NGLQVAV 679 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~-------~gkQvav 679 (1187)
.+.-+....+...+.==.+.||=|..||-.+++. -|=+++---|-|||-.-+=-+.-..+ ++-++.|
T Consensus 7 ~l~L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g------~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LI 80 (417)
T PRK11192 7 ELDLDPSLLEALQDKGYTRPTAIQAEAIPPALDG------RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILI 80 (417)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 7798999999999779999999999999999779------9889989998679999999999998752103689964999
Q ss_pred EECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCCCCCCCCCEEEEE
Q ss_conf 8243665558999999860678983354106663025677775312257608985206-----54278520236569972
Q gi|254780947|r 680 IAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPKITFANLGLIIID 754 (1187)
Q Consensus 680 lvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~v~f~~LgLliiD 754 (1187)
||||-=||.|.|+.+..--...++++..+.-=.+..+|.+.+. +.+||||||-- +-++.+.++++-.||||
T Consensus 81 l~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~----~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlD 156 (417)
T PRK11192 81 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAVETLILD 156 (417)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH----CCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9471999999999999864005730599856878799999983----699989978607777886367010457489996
Q ss_pred CHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCH-HHHHHHHCCCCCCEEECCCCCC--CCEEEEEEECCHHHHHHH
Q ss_conf 2233-----0088899886316788489995353408-8999971222541220157887--753799985797898999
Q gi|254780947|r 755 EEQH-----FGVKHKEALKETHTGVHVLTLSATPIPR-TLQLAITGVRELSLISMPPINR--IACRTSISIFDPLVVRET 826 (1187)
Q Consensus 755 EEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPR-TL~msl~g~rd~S~i~tpP~~R--~~v~T~v~~~~~~~i~~a 826 (1187)
|=+| |.=.-..-++.++....++-+|||-=.. .-.++-.-+.+-..|...|.++ ..|.-++..-++.--+-+
T Consensus 157 EAD~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~ 236 (417)
T PRK11192 157 EADRMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRADDLEHKTA 236 (417)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 75521113547899999864767723899973268478999999836798899964676666743699999376899999
Q ss_pred HHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf 998987---18859998264469288999998616546488861346747899999999638875797610200363322
Q gi|254780947|r 827 LMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 827 i~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip 903 (1187)
+...+- ..+|+..-+|..+..+.++..|++. ..++..-||.|+..+=+++|.+|-+|+++|||||-+..-|||||
T Consensus 237 ~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 314 (417)
T PRK11192 237 LLCHLLKQEEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDID 314 (417)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC
T ss_conf 9999985347665215311246676898865314--88357540017999999999999769998999812434677704
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 332667625023588604553221035676736999966888889889999999997255
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
+++..|-.+.=. -...-.|==||.||.++.+-|+-|+.+. -...|+.|+.+..
T Consensus 315 ~V~~VInyd~P~-~~~~YvHRiGRTGR~G~~G~ait~v~~~------d~~~~~~ie~~~~ 367 (417)
T PRK11192 315 DISHVINFDMPR-SADTYLHRIGRTGRAGKKGTAISLVEAH------DHLLLGKIERYIE 367 (417)
T ss_pred CCCEEEEECCCC-CHHHHHHHCCHHHCCCCCEEEEEEECHH------HHHHHHHHHHHHC
T ss_conf 698899979999-8889233067723489954899987489------9999999999977
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=9e-20 Score=171.10 Aligned_cols=336 Identities=21% Similarity=0.214 Sum_probs=252.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC---------CCEEE
Q ss_conf 787846789899848888874489999999876059885414431665432489999999875112---------75499
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN---------GLQVA 678 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~---------gkQva 678 (1187)
|.-+....+..++.==.+.||=|..||-.+++. -|=|++---|-|||-.-+=-+.--... .-|+.
T Consensus 6 lgL~~~ll~aL~~~G~~~PTpIQ~~aIP~iL~G------rDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aL 79 (457)
T PRK10590 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEG------RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (457)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 498999999999779999999999999999779------98899889811899999999999986367654456882499
Q ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-H----HHCCCCCCCCCCEEEE
Q ss_conf 9824366555899999986067898335410666302567777531225760898520-6----5427852023656997
Q gi|254780947|r 679 VIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-A----LLNPKITFANLGLIII 753 (1187)
Q Consensus 679 vlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~----ll~~~v~f~~LgLlii 753 (1187)
|||||-=||.|-++.|..--...++++.++..-.+...|..-+ + +.+||||||= | +-++.+.+.++-.||+
T Consensus 80 IL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l---~-~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVl 155 (457)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL---R-GGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (457)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH---C-CCCCEEEECCHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9768799999999999974255894599997997775999986---1-89998998928889888626776575239998
Q ss_pred ECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCC--CEEEEEEECCHHHHHHH
Q ss_conf 22233-----008889988631678848999535340889999712225412201578877--53799985797898999
Q gi|254780947|r 754 DEEQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRI--ACRTSISIFDPLVVRET 826 (1187)
Q Consensus 754 DEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~--~v~T~v~~~~~~~i~~a 826 (1187)
||-.| |--.-+.-++.+....-.+-.|||==+-...++-.-+++-..|+..+.+.. .|+-++..-+..--.++
T Consensus 156 DEAD~mLd~gF~~di~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~k~~~ 235 (457)
T PRK10590 156 DEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKREL 235 (457)
T ss_pred ECCHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHH
T ss_conf 37056515665366899986387652689995048889999999976898899963676656130489999566789999
Q ss_pred HHHHHHHC--CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCC
Q ss_conf 99898718--8599982644692889999986165464888613467478999999996388757976102003633223
Q gi|254780947|r 827 LMREYYRG--GQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPK 904 (1187)
Q Consensus 827 i~rEl~Rg--GQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~ 904 (1187)
+..=+..+ .|+..-+|..++-+.++..|++. ..++..-||.|+..+=+++|.+|-+|++.|||||-+.-=|||||+
T Consensus 236 L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~--g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 313 (457)
T PRK10590 236 LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (457)
T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHC--CCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 999986158663358841199999999998556--998232324789999999999998699829995770115566356
Q ss_pred CCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 326676250235886045532-21035676736999966888889889999999997255
Q gi|254780947|r 905 ANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 905 aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
++..|=.|.=.- ..-|--| ||.||.++.+.||-|+.+ +-++-|+.|+.+..
T Consensus 314 V~~VInyD~P~~--~e~YvHRiGRTGRaG~~G~ait~v~~------~e~~~~~~ie~~~~ 365 (457)
T PRK10590 314 LPHVVNYELPNV--PEDYVHRIGRTGRAAATGEALSLVCV------DEHKLLRDIEKLLK 365 (457)
T ss_pred CCEEEEECCCCC--HHHEECCCCCCCCCCCCEEEEEEECH------HHHHHHHHHHHHHC
T ss_conf 887999389997--44500226706058995369998668------99999999999977
No 15
>pfam02559 CarD_TRCF CarD-like/TRCF domain. CarD is a Myxococcus xanthus protein required for the activation of light- and starvation-inducible genes. This family includes the presumed N-terminal domain. CarD interacts with the zinc-binding protein CarG, to form a complex that regulates multiple processes in Myxococcus xanthus. This family also includes a domain to the N-terminal side of the DEAD helicase of TRCF proteins. TRCF displaces RNA polymerase stalled at a lesion, binds to the damage recognition protein UvrA, and increases the template strand repair rate during transcription. This domain is involved in binding to the stalled RNA polymerase.
Probab=99.91 E-value=1.2e-24 Score=208.61 Aligned_cols=97 Identities=43% Similarity=0.761 Sum_probs=92.5
Q ss_pred HHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 403235112035542331123101456666635999986998799666752111100-3678885323434034899999
Q gi|254780947|r 502 NIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRY-STEITTVTLDKLGGSAWKTRKA 580 (1187)
Q Consensus 502 eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskY-g~~~~~p~L~kLGg~~W~k~K~ 580 (1187)
.|++||||||.+||||+|.||++++++|..+||+.|+|+++++||||++++++|+|| +++++.|+||+||+..|+++|+
T Consensus 1 ~~~~GD~VVh~~~Gvg~~~gi~~~~~~~~~~~y~~l~y~~~~~l~vPv~~~~~i~ry~~~~~~~~~l~~L~~~~W~~rk~ 80 (98)
T pfam02559 1 MLKVGDYVVHPDHGVGRFEGIETIEVGGEKREYYVLEYADGDKLYVPVDQLDLIGRYIGSEDEVPVLDKLGGGTWKKRKR 80 (98)
T ss_pred CCCCCCEEECCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH
T ss_conf 99999999777996489968899830891437999996599889987788767503768888753222128565899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254780947|r 581 NLKKRLEDLAQKLVDIAA 598 (1187)
Q Consensus 581 Kakk~v~diA~eLl~lyA 598 (1187)
|+|+.+.++|+|||++||
T Consensus 81 k~k~~~~~~a~ell~~~a 98 (98)
T pfam02559 81 KIKSGDIDIAAELLRLLA 98 (98)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999789999999999619
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.90 E-value=4.6e-19 Score=165.63 Aligned_cols=336 Identities=17% Similarity=0.210 Sum_probs=244.8
Q ss_pred CCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH---HHHCCCCEEEEEEC
Q ss_conf 77878467898998488888-744899999998760598854144316654324899999998---75112754999824
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAF---IAVMNGLQVAVIAP 682 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAaf---kav~~gkQvavlvP 682 (1187)
.+.-+....+..++ .-|+. ||=|..||..+++. -|-+++---|-|||-.-+=... .+-..+-|+.||||
T Consensus 8 ~l~L~~~ll~aL~~-~G~~~pTpIQ~~aIP~il~G------~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~P 80 (459)
T PRK11776 8 TLPLPPALLANLDE-LGYTEMTPIQAQSLPAILAG------KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCP 80 (459)
T ss_pred HCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 48979999999997-79999998999999999779------988998899858999999999984113678985999967
Q ss_pred HHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCCCCCCCCCEEEEECH
Q ss_conf 3665558999999860678-983354106663025677775312257608985206-----5427852023656997222
Q gi|254780947|r 683 TTLLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPKITFANLGLIIIDEE 756 (1187)
Q Consensus 683 TTiLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~v~f~~LgLliiDEE 756 (1187)
|-=||.|-++.++.=-... .++|..+.-=.+..+|... |+.| .||||||-- +-++.+.+.++..||+||=
T Consensus 81 TRELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~~~---L~~~-~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEA 156 (459)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIGS---LEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (459)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH---HHCC-CCEEEECCHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 599999999999999850588259999899327999999---7469-999998958999887516632231038997062
Q ss_pred HHH-----HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC-CCEEEEEEECCHHHHHHHHHHH
Q ss_conf 330-----0888998863167884899953534088999971222541220157887-7537999857978989999989
Q gi|254780947|r 757 QHF-----GVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR-IACRTSISIFDPLVVRETLMRE 830 (1187)
Q Consensus 757 qrF-----GV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R-~~v~T~v~~~~~~~i~~ai~rE 830 (1187)
.+. .=.-++-++.+..+.-++-.|||=-+....++-.-+++--.|.....+. -.|+-+..+-++.-=.+++.+=
T Consensus 157 D~mLd~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~v~~~~~~~~I~q~~~~v~~~~K~~~L~~l 236 (459)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVKVESTHDDSTIEQRFYEVDPDERLPALQRL 236 (459)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHH
T ss_conf 45432786688999998688130268884568989999999977898999967877798637999997718789999999
Q ss_pred HH--HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEE
Q ss_conf 87--1885999826446928899999861654648886134674789999999963887579761020036332233266
Q gi|254780947|r 831 YY--RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTM 908 (1187)
Q Consensus 831 l~--RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTi 908 (1187)
+. ...++-.-||..+..+.++..|++. ...+..-||.|+..+=+++|.+|-+|+++|||||-+..-|||||+.+..
T Consensus 237 l~~~~~~~~IIFcntk~~v~~l~~~L~~~--g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~V 314 (459)
T PRK11776 237 LLHYRPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAV 314 (459)
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEE
T ss_conf 97368766037617489999999999867--9968998799999999999999977999799881043476771359889
Q ss_pred EEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 76250235886045532-21035676736999966888889889999999997255
Q gi|254780947|r 909 IVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 909 ii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
|-.+.=. -..-|=-| ||.||.++.+-||.++.+. -..+|+.|++++.
T Consensus 315 InyDlP~--~~e~YvHRiGRTGRaG~~G~ait~vt~~------e~~~l~~ie~~~~ 362 (459)
T PRK11776 315 INYELAR--DPEVHVHRIGRTGRAGSKGLALSLVAPE------EMQRAAAIEDYLG 362 (459)
T ss_pred EEECCCC--CHHHHHHCCCHHHCCCCCEEEEEEECHH------HHHHHHHHHHHHC
T ss_conf 9978989--7455202052513789965799998689------9999999999978
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=1.4e-18 Score=161.85 Aligned_cols=334 Identities=18% Similarity=0.168 Sum_probs=246.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CCCEE
Q ss_conf 78784678989984888887448999999987605988541443166543248999999987511----------27549
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----------NGLQV 677 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----------~gkQv 677 (1187)
|.-+....+..++.==-..||=|.+||--+++. -|=+++---|=|||---+=.++-..+ ++-|+
T Consensus 14 LgL~~~Ll~aL~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~a 87 (574)
T PRK04537 14 FDLHPALVAGLESAGFTRCTPIQALTLPVALPG------GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (574)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 698999999999779998999999999999579------98899848988899999999999998374434577899619
Q ss_pred EEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-HHHH----C-CCCCCCCCCEE
Q ss_conf 9982436655589999998606789833541066630256777753122576089852-0654----2-78520236569
Q gi|254780947|r 678 AVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-HALL----N-PKITFANLGLI 751 (1187)
Q Consensus 678 avlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-H~ll----~-~~v~f~~LgLl 751 (1187)
.|||||-=||.|-++.+..-....++++.++..=.+..+|++.++ + .+|||||| .||+ + +-+.++++-.|
T Consensus 88 LILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~L~---~-g~dIVVaTPGRLld~L~~~~~~~L~~vk~L 163 (574)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---Q-GVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (574)
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHC---C-CCCEEEECHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 997798999999999999986458977999979966889999873---5-999899898999999981798653331589
Q ss_pred EEECHHH-----HHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC--CCEEEEEEECCHHH
Q ss_conf 9722233-----00888998863167--884899953534088999971222541220157887--75379998579789
Q gi|254780947|r 752 IIDEEQH-----FGVKHKEALKETHT--GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR--IACRTSISIFDPLV 822 (1187)
Q Consensus 752 iiDEEqr-----FGV~~Ke~lk~~~~--~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R--~~v~T~v~~~~~~~ 822 (1187)
|+||=.+ |.-.-+.-++.+-. +.-++-.|||==++...++-..+++-..|.....+- -.|+-++.--++.-
T Consensus 164 VLDEAD~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~ 243 (574)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEE 243 (574)
T ss_pred EECCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHH
T ss_conf 96273265428779999999996665568558999832777999999997799869996566545776038999777789
Q ss_pred HHHHHHHHH--HHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCC
Q ss_conf 899999898--718859998264469288999998616546488861346747899999999638875797610200363
Q gi|254780947|r 823 VRETLMREY--YRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL 900 (1187)
Q Consensus 823 i~~ai~rEl--~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGl 900 (1187)
-..++..-+ ..++|+..-+|.....+.++..|++. ..++..-||.|+..+=+++|.+|-+|+..|||||-+.-=||
T Consensus 244 K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~--g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGI 321 (574)
T PRK04537 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (574)
T ss_pred HHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 9999999997267765115334189999999999977--99689970999999999999999769997997735002335
Q ss_pred CCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 3223326676250235886045532-210356767369999668888898899999999972
Q gi|254780947|r 901 DLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 901 Dip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
|||+++..|=.|.=.- ..-|=-| ||.||.++.+-|+=|+. ++-..-|+.|+.|
T Consensus 322 DIp~V~~VINYDlP~~--~e~YVHRIGRTGRaGr~G~AITfv~------~~e~~~l~~IE~~ 375 (574)
T PRK04537 322 HIDGVKYVYNYDLPFD--AEDYVHRIGRTARLGEEGDAISFAC------ERYAMSLPDIEAY 375 (574)
T ss_pred CCCCCCEEEEECCCCC--HHHHHCCCCHHHCCCCCEEEEEEEC------HHHHHHHHHHHHH
T ss_conf 7146997999579698--2141124535037899335999877------7998999999998
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=1.6e-18 Score=161.51 Aligned_cols=374 Identities=18% Similarity=0.206 Sum_probs=257.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH---HHHHCCCCEEEEEECHH
Q ss_conf 787846789899848888874489999999876059885414431665432489999999---87511275499982436
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAA---FIAVMNGLQVAVIAPTT 684 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAa---fkav~~gkQvavlvPTT 684 (1187)
|.-+....+..++.==-..||=|..||--++.. -|=++|---|=|||=.=+=.+ ...-..+-|+.|||||-
T Consensus 11 lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTR 84 (629)
T PRK11634 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNG------RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCH
T ss_conf 798999999999879999999999999999679------98899788847899999999999866236898689978998
Q ss_pred HHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HHH----CCCCCCCCCCEEEEECHHH
Q ss_conf 65558999999860678-98335410666302567777531225760898520-654----2785202365699722233
Q gi|254780947|r 685 LLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-ALL----NPKITFANLGLIIIDEEQH 758 (1187)
Q Consensus 685 iLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~ll----~~~v~f~~LgLliiDEEqr 758 (1187)
=||.|-++.|..=-+.+ .+++..+.--.+...| ++.|+.| +||||||- ||+ .+.+.+.+|-.||+||=-+
T Consensus 85 ELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q---~~~L~~g-~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~ 160 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ---LRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH---HHHHCCC-CCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHH
T ss_conf 9999999999999721799779999899778999---9986279-99999698999999972964120076789867155
Q ss_pred -----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECC--CCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf -----0088899886316788489995353408899997122254122015--788775379998579789899999898
Q gi|254780947|r 759 -----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP--PINRIACRTSISIFDPLVVRETLMREY 831 (1187)
Q Consensus 759 -----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tp--P~~R~~v~T~v~~~~~~~i~~ai~rEl 831 (1187)
|-=.-+.-++.+..+.-++-.|||-=+.-..++-.-+++-..|..- ...+..|.-+.......--.+|+.+-|
T Consensus 161 mL~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 33636599999999867403144666314659999999987569879740455555776305999965245799999998
Q ss_pred H--HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEE
Q ss_conf 7--18859998264469288999998616546488861346747899999999638875797610200363322332667
Q gi|254780947|r 832 Y--RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI 909 (1187)
Q Consensus 832 ~--RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTii 909 (1187)
. .-.++..-||.....+.+++.|++. .......||.|+..+=+++|.+|-+|+++|||||-+.-=|||||+++..|
T Consensus 241 ~~~~~~~~IIF~~Tk~~~~~l~~~L~~~--g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VI 318 (629)
T PRK11634 241 EAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV 318 (629)
T ss_pred HHCCCCEEEEEEECHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 6158884899982278899999999976--99657656899999999999999759998898786210557725688899
Q ss_pred EECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHCCCC
Q ss_conf 6250235886045532-21035676736999966888889889999999997255-------652489999998511630
Q gi|254780947|r 910 VQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT-------LGAGFQLASYDLDIRGTG 981 (1187)
Q Consensus 910 i~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~-------lGsGf~iA~~DleiRGaG 981 (1187)
-.+.=. -+.-|--| ||.||.++.+-|+.|+.+. -++.|+.|+.++. +=++=.|+.+.++---
T Consensus 319 NyDlP~--d~e~YVHRiGRTGRaGr~G~Aitfv~~~------e~~~l~~ier~~~~~~~~~~~p~~~~i~~~r~~~~~-- 388 (629)
T PRK11634 319 NYDIPM--DSESYVHRIGRTGRAGRAGRALLFVENR------ERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFA-- 388 (629)
T ss_pred EECCCC--CHHHCCCCCCCCCCCCCCEEEEEEECHH------HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH--
T ss_conf 968989--7434010258331689964699988889------999999999997798601489699999999999999--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00461115538983389999999999
Q gi|254780947|r 982 NLLGEEQSGHIREIGFELYQKMLEET 1007 (1187)
Q Consensus 982 ~llG~~QsG~i~~vG~~ly~~ml~~a 1007 (1187)
+.=+-.+++-..+.|..++++-
T Consensus 389 ----~~~~~~~~~~~~~~~~~~~~~~ 410 (629)
T PRK11634 389 ----AKVQQQLESSDLDQYRALLAKI 410 (629)
T ss_pred ----HHHHHHHHCCCHHHHHHHHHHH
T ss_conf ----9998875125468999999997
No 19
>pfam03461 TRCF TRCF domain.
Probab=99.89 E-value=1.8e-22 Score=191.98 Aligned_cols=101 Identities=37% Similarity=0.704 Sum_probs=98.4
Q ss_pred ECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCE
Q ss_conf 54885116734389988899999987508998999999999776248898899999999999999998697599960985
Q gi|254780947|r 1027 LIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKG 1106 (1187)
Q Consensus 1027 ~~~~~~~ip~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~~~~~l~~~~~lk~~~~~~~i~~i~~~~~~ 1106 (1187)
|++++||||++||+|..+||.+||||+++++.+|++++.+||+||||++|.+|+||+.+++||++|+++||.+|+.+.+.
T Consensus 1 ~l~i~a~IP~~YI~d~~~Rl~~Yrrls~~~~~~ei~~i~~El~DRfG~~P~e~~nL~~~~~lk~~a~~~gi~~i~~~~~~ 80 (101)
T pfam03461 1 DLPVDAFIPDDYIPDVRQRLELYKRIAAAESEEELDEIEDELIDRFGPLPEEVKNLLELARLKLLAKRLGIEKIKLKGKG 80 (101)
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCE
T ss_conf 98977607967669878999999999825699999999999999838974999999999999999998799389961998
Q ss_pred EEEEECCCCCCCHHHHHHHHH
Q ss_conf 999963888889899999998
Q gi|254780947|r 1107 IIIQFRHKTFSNPEALLQYIA 1127 (1187)
Q Consensus 1107 ~~~~f~~~~~~~~~~~~~~~~ 1127 (1187)
+.++|.+++.+++++++.+++
T Consensus 81 ~~i~f~~~~~~~~~~l~~~~~ 101 (101)
T pfam03461 81 ITLQFSDDTSIDPEKLIKLIQ 101 (101)
T ss_pred EEEEECCCCCCCHHHHHHHHC
T ss_conf 999860799999999999849
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=2.2e-18 Score=160.43 Aligned_cols=336 Identities=18% Similarity=0.208 Sum_probs=244.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CCCE
Q ss_conf 778784678989984888887448999999987605988541443166543248999999987511----------2754
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----------NGLQ 676 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----------~gkQ 676 (1187)
.+.-+....+..++.==...||=|..||-.+++. -|=+++---|=|||-.=+=.++-..+ .+-+
T Consensus 13 ~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G------~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~ 86 (423)
T PRK04837 13 DFALHPKVVEALEKKGFEYCTPIQALALPLTLAG------RDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPR 86 (423)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 4796999999999779999999999999999679------9889989998749999999999999837453345567861
Q ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-HH----CCCCCCCCCCEE
Q ss_conf 9998243665558999999860678983354106663025677775312257608985206-54----278520236569
Q gi|254780947|r 677 VAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-LL----NPKITFANLGLI 751 (1187)
Q Consensus 677 vavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-ll----~~~v~f~~LgLl 751 (1187)
+.|||||-=||.|-++.|..=-...++++.++.-=.+..+|.+.++ + .+||||||-- |+ ++.+.++++-.|
T Consensus 87 aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~---~-~~dIlV~TPgRL~d~~~~~~~~l~~i~~l 162 (423)
T PRK04837 87 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLE---S-GVDILIGTTGRLIDYAKQNHINLGAIQVV 162 (423)
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH---C-CCCEEEECHHHHHHHHHHCCCCCCCCEEE
T ss_conf 8999388999999999999974325845999989988799999871---7-99989989189999986422123664289
Q ss_pred EEECHHH-----HHHHHHHHHHHCCCCCCEE--EEECCCCCHHHHHHHHCCCCCCEEECCCCCCCC--EEE-EEEECCHH
Q ss_conf 9722233-----0088899886316788489--995353408899997122254122015788775--379-99857978
Q gi|254780947|r 752 IIDEEQH-----FGVKHKEALKETHTGVHVL--TLSATPIPRTLQLAITGVRELSLISMPPINRIA--CRT-SISIFDPL 821 (1187)
Q Consensus 752 iiDEEqr-----FGV~~Ke~lk~~~~~vdvL--tlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~--v~T-~v~~~~~~ 821 (1187)
|+||-.| |.=.-+.-++.+...-.-+ -.|||==+..-.++...+.+-..|...|.+..+ |+- ++..-++.
T Consensus 163 VlDEAD~lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~ 242 (423)
T PRK04837 163 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE 242 (423)
T ss_pred EEECHHHHHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHH
T ss_conf 96344654302639999999996896221089997036888999999997789879996577656654269999917277
Q ss_pred --HHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECC
Q ss_conf --989999989871885999826446928899999861654648886134674789999999963887579761020036
Q gi|254780947|r 822 --VVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESG 899 (1187)
Q Consensus 822 --~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsG 899 (1187)
..-..+..+ ...+|+..-+|..++.+.++..|++. ..+++.-||.|+.++=.++|.+|-+|+++|||||-+.--|
T Consensus 243 K~~~L~~ll~~-~~~~k~iIF~nt~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 319 (423)
T PRK04837 243 KMRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARG 319 (423)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCC
T ss_conf 99999999984-08874688616288899999999765--9817872254579999999999976999899870043277
Q ss_pred CCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33223326676250235886045532-21035676736999966888889889999999997255
Q gi|254780947|r 900 LDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 900 lDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
||||+++..|-.|.=. =+.-|--| ||.||.++.+-|+-++ +++-...|.+|+++-.
T Consensus 320 LDi~~V~~VInyD~P~--~~~~YiHRiGRTgRaG~~G~aitf~------~~~~~~~l~~ie~~~~ 376 (423)
T PRK04837 320 LHIPDVTHVFNYDLPD--DCEDYVHRIGRTGRAGASGHSISFA------CEEYALNLPAIETYIG 376 (423)
T ss_pred CCCCCCCEEEEECCCC--CHHHEECCCCHHHCCCCCEEEEEEE------CHHHHHHHHHHHHHHC
T ss_conf 7726798899969989--7455100465412789946899987------3999999999999968
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.3e-18 Score=160.31 Aligned_cols=337 Identities=20% Similarity=0.228 Sum_probs=250.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCE-EEEEE
Q ss_conf 77878467898998488888744899999998760598854144316654324899999998751----12754-99982
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV----MNGLQ-VAVIA 681 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav----~~gkQ-vavlv 681 (1187)
.+..+..+.+.+.+.---+.||=|..||-.++.- -|=+++.--|-|||--=.=..+..+ ...++ +.||+
T Consensus 33 ~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~ 106 (513)
T COG0513 33 SLGLSPELLQALKDLGFEEPTPIQLAAIPLILAG------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 6599999999999659899898999658776369------9979986898717899999999997400455777569977
Q ss_pred CHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH----HH-CCCCCCCCCCEEEEEC
Q ss_conf 43665558999999860678-983354106663025677775312257608985206----54-2785202365699722
Q gi|254780947|r 682 PTTLLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA----LL-NPKITFANLGLIIIDE 755 (1187)
Q Consensus 682 PTTiLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~----ll-~~~v~f~~LgLliiDE 755 (1187)
||-=||.|-++.+..--... .+++.++.-=.+...|. +.|+.| +||||||.- ++ .+.+.+..+.-||+||
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 99999999999999998624584299998998989999---987249-98999796089999864885546501899676
Q ss_pred HHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC----CCEEEEEEECCHHHHHHH
Q ss_conf 233-----00888998863167884899953534088999971222541220157887----753799985797898999
Q gi|254780947|r 756 EQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR----IACRTSISIFDPLVVRET 826 (1187)
Q Consensus 756 Eqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R----~~v~T~v~~~~~~~i~~a 826 (1187)
.-| |-=.-..-++.+..+..+|--|||-=+....++-.-++|-..|+..|..- -.|.-++..-+..--+..
T Consensus 183 ADrmld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHH
T ss_conf 17663887689999999738977489999824898999999997368807996432233530047079998085677999
Q ss_pred HHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCC
Q ss_conf 998987---18859998264469288999998616546488861346747899999999638875797610200363322
Q gi|254780947|r 827 LMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 827 i~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip 903 (1187)
....+- ..+|+...+|.....+.++..|+..= .++...||.|+.++=+++|.+|.+|+++|||||-+.-=|||||
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g--~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~ 340 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG--FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCC
T ss_conf 99999827888839999576776999999999789--6599973889988999999999759989899806544689966
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 3326676250235886045532210356767369999668888898899999999972
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
+++-.|=.|.-.=-=.=+| =-||.||.++.+.|+.++.+. .-.+.|..|+..
T Consensus 341 ~v~~VinyD~p~~~e~yvH-RiGRTgRaG~~G~ai~fv~~~-----~e~~~l~~i~~~ 392 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVH-RIGRTGRAGRKGVAISFVTEE-----EEVKKLKRIEKR 392 (513)
T ss_pred CCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCH-----HHHHHHHHHHHH
T ss_conf 6747997879998041317-345343489987279985562-----349999999998
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.88 E-value=1e-17 Score=155.22 Aligned_cols=337 Identities=16% Similarity=0.184 Sum_probs=244.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CC
Q ss_conf 56778784678989984888887448999999987605988541443166543248999999987511----------27
Q gi|254780947|r 605 VPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----------NG 674 (1187)
Q Consensus 605 g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----------~g 674 (1187)
-..|.-+....+..++.==...||=|.+||--+++- -|=++.---|=|||-.-+=-.+--.. ++
T Consensus 86 F~dl~L~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~ 159 (472)
T PRK01297 86 FHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAG------HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 159 (472)
T ss_pred HHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCC
T ss_conf 864788999999999779999999999999999769------98899899986799999999999997177510113689
Q ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HH----HCCCCCCCCCC
Q ss_conf 54999824366555899999986067898335410666302567777531225760898520-65----42785202365
Q gi|254780947|r 675 LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-AL----LNPKITFANLG 749 (1187)
Q Consensus 675 kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~l----l~~~v~f~~Lg 749 (1187)
-|+.|||||-=||.|-++.+..=-...+++|..+.-=. ..++-.+.++...+||||||= || -++.+.+.++-
T Consensus 160 p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~---~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~ 236 (472)
T PRK01297 160 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGM---DFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 236 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCE
T ss_conf 52999879999999999999997462797699997898---879999998558998899797999987434825425522
Q ss_pred EEEEECHHH-----HHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCC--EEEEEEECCH
Q ss_conf 699722233-----00888998863167--88489995353408899997122254122015788775--3799985797
Q gi|254780947|r 750 LIIIDEEQH-----FGVKHKEALKETHT--GVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIA--CRTSISIFDP 820 (1187)
Q Consensus 750 LliiDEEqr-----FGV~~Ke~lk~~~~--~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~--v~T~v~~~~~ 820 (1187)
.|||||=.| |.-.-..-++.+.. +.-++-.|||--+-..+++-.-+++-.++...+.+..+ |+-++..-..
T Consensus 237 ~lVlDEAD~LLd~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~~~~p~~v~i~~~~~~~~~v~q~~~~~~~ 316 (472)
T PRK01297 237 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 316 (472)
T ss_pred EEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCH
T ss_conf 99998731210257599999999968985571699985257789999999977998899965776677760289998188
Q ss_pred HHHHHHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEE
Q ss_conf 898999998987---18859998264469288999998616546488861346747899999999638875797610200
Q gi|254780947|r 821 LVVRETLMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVE 897 (1187)
Q Consensus 821 ~~i~~ai~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiE 897 (1187)
.- +..+..++- ..+|+..-+|+.++.+.++..|++. ..++..-||.|+..+=.++|.+|-+|++.|||||-+..
T Consensus 317 ~d-k~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~--g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaa 393 (472)
T PRK01297 317 SD-KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG 393 (472)
T ss_pred HH-HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 89-9999999998479873689617499999999876544--96168643778999999999999769996998866133
Q ss_pred CCCCCCCCCEEEEECHHHCCCCHHHHH-HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 363322332667625023588604553-2210356767369999668888898899999999972
Q gi|254780947|r 898 SGLDLPKANTMIVQRADMFGLAQLYQL-RGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 898 sGlDip~aNTiii~~ad~~GLaqlyQl-rGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
=|||||+++..|-.+.=.- ..-|=- =||.||.++.+.|+-|+.++ -..-+..|+.+
T Consensus 394 RGLDi~~V~~VInyD~P~~--~~~YIHRiGRTGRaG~~G~aisfv~~~------d~~~~~~ie~~ 450 (472)
T PRK01297 394 RGIHIDGISHVINFTLPED--PDDYVHRIGRTGRAGASGVSISFAGED------DAFQLPEIEEL 450 (472)
T ss_pred CCCCCCCCCEEEEECCCCC--HHHHHHCCCHHHCCCCCEEEEEEECHH------HHHHHHHHHHH
T ss_conf 6677578888999689897--676010265312689963799986388------99999999999
No 23
>PTZ00110 helicase; Provisional
Probab=99.88 E-value=2e-17 Score=152.99 Aligned_cols=378 Identities=17% Similarity=0.195 Sum_probs=259.6
Q ss_pred CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHH-HHHHHH--CCCCCCCCHHHHHHHHHHCC------------C
Q ss_conf 3434034899999999--------99999999999999-988740--15677878467898998488------------8
Q gi|254780947|r 568 DKLGGSAWKTRKANLK--------KRLEDLAQKLVDIA-AKRAIH--SVPPLMVSQDLYSQFIKRFP------------H 624 (1187)
Q Consensus 568 ~kLGg~~W~k~K~Kak--------k~v~diA~eLl~ly-A~R~~~--~g~~f~~d~~~~~eFe~~Fp------------y 624 (1187)
+.|+.-+|.+.+-.-- ..|..+..+=++-| ++.+.. .|...|.+-.-+. +..|| -
T Consensus 126 ~~l~~i~w~~~~l~~f~KnfY~eh~~v~~~s~~ev~~~r~~~~i~v~~G~~vP~Pi~~F~--~~~fp~~il~~i~~~GF~ 203 (602)
T PTZ00110 126 KRLMPIDWNQVELVPFEKNFYKEHPEVSAMSTKEVDDIRKEREITIIAGRDVPKPVVSFE--YTSFPDYILKSIEAAGFT 203 (602)
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCEEECCCCCCCCCCCHH--HCCCCHHHHHHHHHCCCC
T ss_conf 468888875300664135277769767618999999999977988927898994726650--159999999999976999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--------HCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 8874489999999876059885414431665432489999999875--------11275499982436655589999998
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIA--------VMNGLQVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafka--------v~~gkQvavlvPTTiLa~QH~~tf~~ 696 (1187)
+.||=|.+||=-++. =.|=+-|---|=|||=-=+=-++.- -.+|-+|.|||||-=||+|-++.+.+
T Consensus 204 ~PTPIQ~qaIPiaLs------GrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~ 277 (602)
T PTZ00110 204 EPTPIQVQGWPIALS------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQ 277 (602)
T ss_pred CCCHHHHHHHHHHHC------CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 999899999879856------98679987897889999999999998516343678997699973839999999999999
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-----HHHCCCCCCCCCCEEEEECHHH-----HHHHHHHH
Q ss_conf 6067898335410666302567777531225760898520-----6542785202365699722233-----00888998
Q gi|254780947|r 697 RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-----ALLNPKITFANLGLIIIDEEQH-----FGVKHKEA 766 (1187)
Q Consensus 697 Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-----~ll~~~v~f~~LgLliiDEEqr-----FGV~~Ke~ 766 (1187)
--....+++.++--=.+.++|..- |+.| +||||||- -|=++.+.+..+-.||+||--| |--.-+.-
T Consensus 278 ~~~~~~ir~~~i~GG~~~~~Q~~~---L~~G-~dIvVATPGRLiDlL~~~~~~L~~v~yLVLDEADRMLDmGFe~qI~~I 353 (602)
T PTZ00110 278 FGRSSKLKNSVAYGGVPKRFQTYA---LRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKI 353 (602)
T ss_pred HHCCCCCEEEEEECCCCHHHHHHH---HCCC-CCEEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 715478549999799687999998---7169-999997923899999649987431028998757766354629999999
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCCC-CCEEECCCCCCC---CEEEEEEECCHHHHH---HHHHHHHHHCCEEEE
Q ss_conf 8631678848999535340889999712225-412201578877---537999857978989---999989871885999
Q gi|254780947|r 767 LKETHTGVHVLTLSATPIPRTLQLAITGVRE-LSLISMPPINRI---ACRTSISIFDPLVVR---ETLMREYYRGGQSFY 839 (1187)
Q Consensus 767 lk~~~~~vdvLtlsATPIPRTL~msl~g~rd-~S~i~tpP~~R~---~v~T~v~~~~~~~i~---~ai~rEl~RgGQvf~ 839 (1187)
++.++++--+|-.|||-=+..-.++-.-+++ --.|..-..+-. .|+-+|...++.-=. ..+..++..+|+|-.
T Consensus 354 l~~i~pdRQTlLFSAT~p~~V~~LA~~~L~~~Pv~I~Vg~~~~~a~~~I~Q~v~vv~~~eK~~~L~~lL~~~~~~~kvII 433 (602)
T PTZ00110 354 VSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTTCHNIKQEVFVIEEHEKRAKLKELLGQIMDGGKILI 433 (602)
T ss_pred HHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 98589787799995589989999999982069889993688877778705899996518899999999985278996899
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCC
Q ss_conf 82644692889999986165464888613467478999999996388757976102003633223326676250235886
Q gi|254780947|r 840 VCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLA 919 (1187)
Q Consensus 840 v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLa 919 (1187)
-+|..+..+.++..|+.. ...+...||.|+..+=+++|.+|-+|++.|||||-+.--|||||+++..|=.|-=. =+
T Consensus 434 FvnTK~~ad~L~~~L~~~--G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI~dV~~VINYD~P~--~~ 509 (602)
T PTZ00110 434 FSETKKGADTLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKHPIMIATDVASRGLDVRDVKYVINFDFPN--QI 509 (602)
T ss_pred EECCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCC--CC
T ss_conf 929738999999999867--99579820889999999999999769998898822233155515798799958979--80
Q ss_pred HHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 045532-21035676736999966888889889999999997255
Q gi|254780947|r 920 QLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 920 qlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
.-|--| ||.||.++.+.||-|+.++.. ..|..=.++++|-..
T Consensus 510 edYVHRIGRTGRAG~kG~A~TF~Tpd~~--~~a~~Lv~~L~ea~q 552 (602)
T PTZ00110 510 EDYVHRIGRTGRAGAKGASYTFLTPDKY--RSARELVKLMREAKQ 552 (602)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCH--HHHHHHHHHHHHCCC
T ss_conf 2210135615068993169999777707--789999999998389
No 24
>PRK13766 Hef nuclease; Provisional
Probab=99.87 E-value=9.1e-20 Score=171.07 Aligned_cols=294 Identities=22% Similarity=0.321 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH--HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89999999876059885414431665432489999999--8751127549998243665558999999860678983354
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAA--FIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIAS 707 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAa--fkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~ 707 (1187)
|....+.-+. . +=|||=+-|-|||-||+=.+ |.. ..++.|.+||||--|++||++.|.+-+.--+.+|..
T Consensus 20 Q~el~~~Al~---~----NtiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~ 91 (764)
T PRK13766 20 QQLLAAKALK---G----NTLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVV 91 (764)
T ss_pred HHHHHHHHHH---C----CEEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999985---8----9899959986689999999999997-489889998588889999999999970999552899
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCEEEEECHHHH-----CCCCCCCCCCEEEEECHHHHHHHHH-----HHHHHCCCCCCEE
Q ss_conf 10666302567777531225760898520654-----2785202365699722233008889-----9886316788489
Q gi|254780947|r 708 ISRFVQTKEAALHKKSITEGQVDIVIGTHALL-----NPKITFANLGLIIIDEEQHFGVKHK-----EALKETHTGVHVL 777 (1187)
Q Consensus 708 lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll-----~~~v~f~~LgLliiDEEqrFGV~~K-----e~lk~~~~~vdvL 777 (1187)
++-=.++++.+++.+ +-+|+|.|...| ++-+...|+.|||+||=||--=.|- ..+.+...+-.||
T Consensus 92 ltG~~~~~~r~~~w~-----~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~~~~~PrIL 166 (764)
T PRK13766 92 LTGEISPEKRAALWE-----KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHEDAKNPLVL 166 (764)
T ss_pred EECCCCHHHHHHHHC-----CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 988878276899860-----799999990899999982986788822899974666667762899999998537785588
Q ss_pred EEECCCCCHHHH-----HHHHCCCCCCEEECCC---------CCCCCEEEEEEECCHHH------HHHHHH---HHHHHC
Q ss_conf 995353408899-----9971222541220157---------88775379998579789------899999---898718
Q gi|254780947|r 778 TLSATPIPRTLQ-----LAITGVRELSLISMPP---------INRIACRTSISIFDPLV------VRETLM---REYYRG 834 (1187)
Q Consensus 778 tlsATPIPRTL~-----msl~g~rd~S~i~tpP---------~~R~~v~T~v~~~~~~~------i~~ai~---rEl~Rg 834 (1187)
-|||||-= ... +.-.+ +|-|+... ..+..+.....+..+.+ +.+++. ..|.+.
T Consensus 167 GLTASPGs-~~e~I~ev~~nL~---i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L~~~ 242 (764)
T PRK13766 167 GLTASPGS-DEEKIKEVCENLG---IEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (764)
T ss_pred EECCCCCC-CHHHHHHHHHHCC---CCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50368876-4489999998659---8728961444434454335673279980797899999999999999999999966
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 8-------------------------------------------------------------------------------
Q gi|254780947|r 835 G------------------------------------------------------------------------------- 835 (1187)
Q Consensus 835 G------------------------------------------------------------------------------- 835 (1187)
|
T Consensus 243 ~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~k~~ 322 (764)
T PRK13766 243 GVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGSKAS 322 (764)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 97004555468999999999999988646879999999999999999999999985189999999999973013332678
Q ss_pred -------------------------------------------EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC----
Q ss_conf -------------------------------------------599982644692889999986165464888613----
Q gi|254780947|r 836 -------------------------------------------QSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHG---- 868 (1187)
Q Consensus 836 -------------------------------------------Qvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHG---- 868 (1187)
.|-.-.+.-.+-..+...|.+ +..+...-.|
T Consensus 323 k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~--~~ik~~~fVGq~s~ 400 (764)
T PRK13766 323 KRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNK--NGIKAIRFVGQASR 400 (764)
T ss_pred HHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH--CCCCCEEEEECCCC
T ss_conf 9987587789999987644678937999999999997269998089992767999999999865--89972289836898
Q ss_pred ----CCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf ----4674789999999963887579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r 869 ----QMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 869 ----qm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
.|+.++=.+++.+|-+|+++|||||++-|=|||||.+|-+|-+++--=-. ..=|=|||-|| ++.+-+|+|+-.+
T Consensus 401 ~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~I-R~IQR~GRTGR-~r~G~v~vLi~~g 478 (764)
T PRK13766 401 DGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEI-RSIQRKGRTGR-QRGGRVVVLIAKG 478 (764)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHH-HHHHHCCCCCC-CCCCEEEEEEECC
T ss_conf 788898989999999998579988898767664488887788899937996199-99997466567-7897499999568
No 25
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=1e-17 Score=155.34 Aligned_cols=379 Identities=20% Similarity=0.266 Sum_probs=261.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 78784678989984888887448999999987605988541443166543248999999987511275499982436655
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
++.|..+++-|.+ =.|+.-|=|..|++.+. .++ +=|+|---|=|||=||.=|.++++..|+.+.+++|+-=||
T Consensus 6 ~~~~~~~~~~~~~-~g~~l~p~Q~ea~~~~~----~gk--NllvsaPTgsGKTlvAe~ai~~~l~~~~k~iyi~P~kAL~ 78 (674)
T PRK01172 6 LGYDDEFLNLFTG-NDFELYDHQRMAIEQLR----KGE--NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLA 78 (674)
T ss_pred CCCCHHHHHHHHH-CCCCCCHHHHHHHHHHH----CCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 2999799999996-79988989999999997----799--5999789998699999999999998589799987789999
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCC-CCCCCEEEEECHHHHHHH
Q ss_conf 589999998606789833541066630256777753122576089852----065427852-023656997222330088
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKIT-FANLGLIIIDEEQHFGVK 762 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~-f~~LgLliiDEEqrFGV~ 762 (1187)
+|-|+.|+ ||.+++++|+....=.+.. -. ..+..||+|-| +.|+..+-. +.++|++||||=|=.|=.
T Consensus 79 ~EK~~~~~-~~~~~g~~v~~~tGd~~~~-----~~--~~~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d~ 150 (674)
T PRK01172 79 MEKYEELS-RLRSLGMRVKISIGDYDDP-----PD--FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHH-HHHCCCCEEEEEECCCCCC-----CC--CCCCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEECCCC
T ss_conf 99999999-8873798277885388898-----01--0255899998789999998649502213698998265250687
Q ss_pred HH--------HHHHHCCCCCCEEEEECC-CCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCH----------HHH
Q ss_conf 89--------988631678848999535-34088999971222541220157887753799985797----------898
Q gi|254780947|r 763 HK--------EALKETHTGVHVLTLSAT-PIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDP----------LVV 823 (1187)
Q Consensus 763 ~K--------e~lk~~~~~vdvLtlsAT-PIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~----------~~i 823 (1187)
+. .|++.+.+++-++.|||| |=|.-|.-=|. -.++.| ...-.|.+.+|.-.+. .-+
T Consensus 151 ~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N~~~la~WL~----a~~~~~-~~RPVpL~~~v~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLN----ASLIKS-NFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHC----CCEEEC-CCCCCCCEEEEEECCCCCCCCHHHCCCCH
T ss_conf 7249999999999853866079971578689999998838----855647-99986608988834601147043234539
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCC-----------------------CEEEEECCCCHHHHHHHHH
Q ss_conf 99999898718859998264469288999998616546-----------------------4888613467478999999
Q gi|254780947|r 824 RETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPEL-----------------------KIAMAHGQMSPKNLEDKMN 880 (1187)
Q Consensus 824 ~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~-----------------------~i~vaHGqm~~~~le~~m~ 880 (1187)
..-+..-+..||||-+-||.=..-+..|..|.+.+|+. -|++-|+-|+..+-+-|=.
T Consensus 226 ~~l~~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~lVE~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_conf 99999999669947999507588999999999853210100103154311209999999628283068999899999999
Q ss_pred HHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC--------CCHHHHHHHHCCCCC--CCCEEEEEECCCCCCCHH
Q ss_conf 9963887579761020036332233266762502358--------860455322103567--673699996688888988
Q gi|254780947|r 881 AFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG--------LAQLYQLRGRVGRSK--IASFALFLLPENRPLTAA 950 (1187)
Q Consensus 881 ~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G--------LaqlyQlrGRVGRs~--~~ayayl~~~~~~~l~~~ 950 (1187)
.|-+|.+.||+||+=.-.|+..|. -|.||.+-.+|+ -++..|+-||-||-. ..++||++..+... .+
T Consensus 306 ~f~~g~i~vl~aT~TLAaGVNlPA-r~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~--~~ 382 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--YD 382 (674)
T ss_pred HHHCCCCEEEEECCHHHHHCCCCE-EEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCCHH--HH
T ss_conf 998699649971446765447860-599993007817997157778989986135899999988708999728228--99
Q ss_pred HHHHH-HHHHH--HCCCCHHHHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999-99997--2556524899999985116300-------------04611155389833899999999999998288
Q gi|254780947|r 951 AQKRL-RILQS--LNTLGAGFQLASYDLDIRGTGN-------------LLGEEQSGHIREIGFELYQKMLEETVASIKGQ 1014 (1187)
Q Consensus 951 a~kRL-~ai~~--~~~lGsGf~iA~~DleiRGaG~-------------llG~~QsG~i~~vG~~ly~~ml~~av~~~kg~ 1014 (1187)
..+++ .+-.+ .+.|++.=.+..+=|+.=+.|- -|-..|. |.+..-..+++++..|+..
T Consensus 383 ~~~~~l~~~~e~i~S~L~~~~~l~~~iL~~Ia~g~~~s~~di~~f~~~Tf~~~q~------~~~~~~~~v~~~l~~L~~~ 456 (674)
T PRK01172 383 AAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQN------GVDEIDYYIESSLKFLKEN 456 (674)
T ss_pred HHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHEEC------CHHHHHHHHHHHHHHHHHC
T ss_conf 9999852898653430587046899999999816579999999999607041467------6789999999999999977
Q ss_pred C
Q ss_conf 8
Q gi|254780947|r 1015 K 1015 (1187)
Q Consensus 1015 ~ 1015 (1187)
.
T Consensus 457 g 457 (674)
T PRK01172 457 G 457 (674)
T ss_pred C
T ss_conf 8
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.86 E-value=1.3e-18 Score=162.26 Aligned_cols=315 Identities=21% Similarity=0.259 Sum_probs=223.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHC
Q ss_conf 84888887448999999987605988541443166543248999999987511275499982436655589999998606
Q gi|254780947|r 620 KRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQ 699 (1187)
Q Consensus 620 ~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~ 699 (1187)
..|.++.-|-|..|++++.+..++ .+.-+|+-=-|.|||=||++|+-.+-.. |.|||||..|+.|-++-+...+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~~- 104 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKFL- 104 (442)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHHHHHC-
T ss_conf 235788859999999999962225--7867999679998899999999982698---8999782999999999999734-
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCC---CCCC--CCCEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 7898335410666302567777531225760898520654278---5202--3656997222330088899886316788
Q gi|254780947|r 700 GFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPK---ITFA--NLGLIIIDEEQHFGVKHKEALKETHTGV 774 (1187)
Q Consensus 700 ~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~---v~f~--~LgLliiDEEqrFGV~~Ke~lk~~~~~v 774 (1187)
+.+..++.++- ..++... .+|+|+|=.-+... -.|. .-+|||+||=|+.+-.--.++-++..+-
T Consensus 105 ~~~~~~g~~~~-----~~~~~~~------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~ 173 (442)
T COG1061 105 LLNDEIGIYGG-----GEKELEP------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA 173 (442)
T ss_pred CCCCCCCEECC-----CCCCCCC------CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 88676603368-----7233577------748999838976415555403566675999752457847799999975103
Q ss_pred C-EEEEECCCCCHHHH------HHHHC--CCCCCEEECCCCCCC-CEEEEEEE----------CCHHHHH----------
Q ss_conf 4-89995353408899------99712--225412201578877-53799985----------7978989----------
Q gi|254780947|r 775 H-VLTLSATPIPRTLQ------LAITG--VRELSLISMPPINRI-ACRTSISI----------FDPLVVR---------- 824 (1187)
Q Consensus 775 d-vLtlsATPIPRTL~------msl~g--~rd~S~i~tpP~~R~-~v~T~v~~----------~~~~~i~---------- 824 (1187)
- +|-|||||. |+-. ..+.| +.+.+.-+--=.+-+ |.+-+... |++..-+
T Consensus 174 ~~~LGLTATp~-R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPE-REDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred CEEEEEECCCC-CCCCCCHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 10467714872-44877524877405755673358998337875774999986236628777403155555555543100
Q ss_pred ------------------HHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf ------------------99998987---188599982644692889999986165464888613467478999999996
Q gi|254780947|r 825 ------------------ETLMREYY---RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFY 883 (1187)
Q Consensus 825 ------------------~ai~rEl~---RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~ 883 (1187)
.++..-+. ||-.+-....+++..+.++..+.. |+. +....|..+..|=+.+...|-
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~--~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA--PGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCC--CCC-EEEEECCCCHHHHHHHHHHHH
T ss_conf 13456777776642899999999987532688669997577999999998626--774-246657899889999999987
Q ss_pred CCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCC--CCC---CEEEEEECCCCCCCHHHHHHHH
Q ss_conf 388757976102003633223326676250235886045532210356--767---3699996688888988999999
Q gi|254780947|r 884 EGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRS--KIA---SFALFLLPENRPLTAAAQKRLR 956 (1187)
Q Consensus 884 ~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs--~~~---ayayl~~~~~~~l~~~a~kRL~ 956 (1187)
.|++++||.+.+...|+|+|+|||+|+-+. -=--.|..|-.||+=|. ++. ++=|-+.++.......+++|-.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRP-TGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCEEEEECC-CCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 089529999614126657888757999779-98799999996166347889996599999645676443326666433
No 27
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=99.84 E-value=2e-18 Score=160.73 Aligned_cols=288 Identities=26% Similarity=0.309 Sum_probs=250.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHHHCCCC
Q ss_conf 43166543248999999987511275499982436655589999998606789833541066-63025677775312257
Q gi|254780947|r 650 LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRF-VQTKEAALHKKSITEGQ 728 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf-~~~~e~~~i~~~l~~G~ 728 (1187)
|+-|+.|-|||||-+++.-++..-||||.+|||---|+-|-.+.|+.||.. .++++.-- .+..++.....+++.|.
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~---~~~~~h~~~l~~~~~~~~w~~~~~g~ 77 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGS---QVAVLHSGKLSDSEKLDAWRKVKLGE 77 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCC---CHHHHCCCCCCCHHHHHHHHHHHCCC
T ss_conf 954567886168889999999733771789704211016789999997187---20101001367345688999985186
Q ss_pred CEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHH-----------HHHCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 60898520654278520236569972223300888998-----------8631678848999535340889999712225
Q gi|254780947|r 729 VDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEA-----------LKETHTGVHVLTLSATPIPRTLQLAITGVRE 797 (1187)
Q Consensus 729 idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~-----------lk~~~~~vdvLtlsATPIPRTL~msl~g~rd 797 (1187)
+.|||||-..+- .-|+||||+|+||||-+.-++.+- .+.-..+.-+.-=||||---+.+-...|.-+
T Consensus 78 ~~~v~G~rsa~f--~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p~~lgsatP~le~~~~~~~~~~~ 155 (524)
T TIGR00595 78 ALVVIGTRSALF--LPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCPVVLGSATPSLESYHNAKRGKYR 155 (524)
T ss_pred CEEEECCCHHHH--CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCC
T ss_conf 005640303432--462114547873464521001368855206788988764048857880567227899998716656
Q ss_pred ----CCEEECCCCCCCCEEEEEEECCH-----------HHHHHHHHHHHHHCCEEEEEECCCC-----------------
Q ss_conf ----41220157887753799985797-----------8989999989871885999826446-----------------
Q gi|254780947|r 798 ----LSLISMPPINRIACRTSISIFDP-----------LVVRETLMREYYRGGQSFYVCPRLS----------------- 845 (1187)
Q Consensus 798 ----~S~i~tpP~~R~~v~T~v~~~~~-----------~~i~~ai~rEl~RgGQvf~v~nrv~----------------- 845 (1187)
+..+..--.+|.|-...+..... ..+-+++..-+..|-|+....||-.
T Consensus 156 p~~~~~~l~~r~~~~~~p~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~~~~c~~cg~~~~cp 235 (524)
T TIGR00595 156 PQRHLLVLPRRVGGRKPPEVKLIDLRKEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSPNLLCRSCGYVLECP 235 (524)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCEECC
T ss_conf 20321110132057757515676221000213210225899999998874167068986155665300000267501056
Q ss_pred ------------------------------------------------CHHHHHHHHHHHCCCCCEEEEECCCCH--HHH
Q ss_conf ------------------------------------------------928899999861654648886134674--789
Q gi|254780947|r 846 ------------------------------------------------DLEKCYTFLQSEVPELKIAMAHGQMSP--KNL 875 (1187)
Q Consensus 846 ------------------------------------------------~i~~~~~~l~~l~p~~~i~vaHGqm~~--~~l 875 (1187)
+.+.+.+.+++++|++|+...--.... ..+
T Consensus 236 ~c~~~~~~h~~~~~g~p~l~ch~c~~~~~~p~~cp~c~~~~~~~~~g~G~~~~~~~l~~~~p~~~~~~~d~d~~~~~~~~ 315 (524)
T TIGR00595 236 NCDVSLTYHKKEGNGQPKLRCHYCGYQEPVPKTCPACGSEDTLKYKGLGTEKVEEELAKLFPGARIARLDSDTTSRKGAH 315 (524)
T ss_pred CCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 65302355321368862012210576677754364446643012035427899999998558873676412212351468
Q ss_pred HHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC-----------CCCHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99999996388757976102003633223326676250235-----------88604553221035676736999966
Q gi|254780947|r 876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF-----------GLAQLYQLRGRVGRSKIASFALFLLP 942 (1187)
Q Consensus 876 e~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~-----------GLaqlyQlrGRVGRs~~~ayayl~~~ 942 (1187)
++.+.+|.+|+.|+|+-|-+|-.|.|.|+..+..|-++|.- +.+-|+|.-||-||+...+-..+-.-
T Consensus 316 ~~~~~~f~~g~~d~l~Gtq~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~ 393 (524)
T TIGR00595 316 EALLNQFANGKADILIGTQMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTY 393 (524)
T ss_pred HHHHHHHHCCCCEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 999999750784067500344315774420367787312002554213467788888876410023468874799730
No 28
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.84 E-value=9.5e-17 Score=147.79 Aligned_cols=314 Identities=18% Similarity=0.218 Sum_probs=236.8
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 467898998488888-7448999999987605988541443166543248999999987511275499982436655589
Q gi|254780947|r 612 QDLYSQFIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQH 690 (1187)
Q Consensus 612 ~~~~~eFe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH 690 (1187)
+.-.+-+..-|.|.. -|-|..+|+.|++ ++ |=|+.==-|+||+=.=.=.| ++-+.-+.|+.|+.=|.+.-
T Consensus 11 ~~a~~~L~~~FG~~~Fr~~Q~e~i~~~l~----g~--D~l~~mpTG~GKSlcyQlPa---l~~~g~tiVisPLisLm~DQ 81 (607)
T PRK11057 11 SGAKQVLQETFGYQQFRPGQEEIIDTVLS----GR--DCLVVMPTGGGKSLCYQIPA---LVLDGLTLVVSPLISLMKDQ 81 (607)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHC----CC--CEEEECCCCCHHHHHHHHHH---HHCCCCEEEECCHHHHHHHH
T ss_conf 79999999866984345769999999986----99--88998789955979999999---87799889986879999999
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HHHCCC----CCCCCCCEEEEECHHH-------
Q ss_conf 9999986067898335410666302567777531225760898520-654278----5202365699722233-------
Q gi|254780947|r 691 FRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-ALLNPK----ITFANLGLIIIDEEQH------- 758 (1187)
Q Consensus 691 ~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~ll~~~----v~f~~LgLliiDEEqr------- 758 (1187)
...... .+|..+.|+--.+..|+.+++.++.+|++++|.-|- ||.+.+ +.=.+++|++|||-|.
T Consensus 82 v~~L~~----~gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcvs~WGhd 157 (607)
T PRK11057 82 VDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCC
T ss_conf 999997----8992999569999999999999997599879998855856978999997188664885306667541550
Q ss_pred HHHH--HHHHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHH--HHHHHHHHHH
Q ss_conf 0088--899886316788489995353408899--997122254122015788775379998579789--8999998987
Q gi|254780947|r 759 FGVK--HKEALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLV--VRETLMREYY 832 (1187)
Q Consensus 759 FGV~--~Ke~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~--i~~ai~rEl~ 832 (1187)
|=-. +=-.+++..+++-+++||||--|++-. ....++++--+..+ -.+|-.+.-.|.+..... +.+.+..+..
T Consensus 158 FRp~Y~~l~~l~~~~~~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~~-~f~RpNl~~~v~~~~~~~~~~~~~~~~~~~ 236 (607)
T PRK11057 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDRPNIRYMLMEKFKPLDQLMRYVQEQRG 236 (607)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEC-CCCCCCCEEEEEECCCHHHHHHHHHHHCCC
T ss_conf 0388999999999769997489996368789999999708999807825-778887414555447739999999870689
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEEC
Q ss_conf 18859998264469288999998616546488861346747899999999638875797610200363322332667625
Q gi|254780947|r 833 RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQR 912 (1187)
Q Consensus 833 RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ 912 (1187)
.-|= .-|...+.-+.+|..|++- ..+++.=||.|++.+=+.+..+|.+++++|+|||.---.|||.||+...|=.+
T Consensus 237 ~sgI--IYc~trk~~e~la~~L~~~--G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~dVR~ViH~~ 312 (607)
T PRK11057 237 KSGI--IYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCEE--EEECCHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEECC
T ss_conf 9779--9969289999999999857--97545305899978999999987568875899750110576777766799778
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 02358860455322103567673699996688
Q gi|254780947|r 913 ADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 913 ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
. --.+.-.||==||-||.+..|+|+|+|.+.
T Consensus 313 ~-P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~ 343 (607)
T PRK11057 313 I-PRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred C-CCCHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf 9-999999999886352589854189985687
No 29
>PRK02362 ski2-like helicase; Provisional
Probab=99.83 E-value=3.6e-17 Score=151.03 Aligned_cols=317 Identities=21% Similarity=0.279 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 87846789899848888-87448999999987605988541443166543248999999987511275499982436655
Q gi|254780947|r 609 MVSQDLYSQFIKRFPHV-ETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 609 ~~d~~~~~eFe~~Fpye-ET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
+-|....+-|+ +.... .-|=|..|++. .+..++ +=++|-=-|=|||-||.=|.++++..|+-|.+++|+-=||
T Consensus 7 ~LP~~~~~~~~-~~gI~~Lyp~Q~eal~~---gl~~g~--NlvvsaPTgsGKTlvAElail~~l~~g~k~vYi~P~kALa 80 (736)
T PRK02362 7 PLPDGVIDFYE-GSGIEELYPPQAEAVEA---GLLEGK--NLLAAIPTASGKTLLAELAMLKAIAEGGKALYIVPLRALA 80 (736)
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHH---HHCCCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHH
T ss_conf 99989999999-76997578999999986---435698--1899799998589999999999998399799985879999
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCCCCC-CCCCCEEEEECHHHHHHH
Q ss_conf 5899999986067898335410666302567777531225760898520----65427852-023656997222330088
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNPKIT-FANLGLIIIDEEQHFGVK 762 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~~v~-f~~LgLliiDEEqrFGV~ 762 (1187)
+|-|+.|+ ||.+++++|+.++-=.+... +. -+.-||+|-|- .|+.+.-. ++++||+||||=|=.|=.
T Consensus 81 ~EK~~~~~-~~~~~gi~V~~~tGd~~~~~-----~~--l~~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~d~ 152 (736)
T PRK02362 81 SEKFEEFS-EFSELGLRVGISTGDYDRRD-----EY--LGRNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHLIDSP 152 (736)
T ss_pred HHHHHHHH-HHHCCCCEEEEEECCCCCCH-----HH--CCCCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEEECCC
T ss_conf 99999999-87457998999808988783-----14--368999999979999998448167650898998176786688
Q ss_pred HH--------HHHHHCCCCCCEEEEECC-CCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEE-----C----------
Q ss_conf 89--------988631678848999535-34088999971222541220157887753799985-----7----------
Q gi|254780947|r 763 HK--------EALKETHTGVHVLTLSAT-PIPRTLQLAITGVRELSLISMPPINRIACRTSISI-----F---------- 818 (1187)
Q Consensus 763 ~K--------e~lk~~~~~vdvLtlsAT-PIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~-----~---------- 818 (1187)
+. -|++.+.+++-++.|||| |=|.-|.--|.. .++.+ ...-.|.+.+|.- +
T Consensus 153 ~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~~~la~WL~a----~~~~s-~~RPV~L~~~v~~~~~~~~~~~~~~~~~~ 227 (736)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDMQVIALSATIGNADELAAWLDA----ELVDS-EWRPVDLREGVFYGGAIHFKDTERELEVP 227 (736)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCC----CCCCC-CCCCCCCEEEEEECCEECCCCCCCHHCCC
T ss_conf 72499999999997338774389862455899999998388----62158-98886755656507701035100300025
Q ss_pred CHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHH-----------------------HCC-----------CCCEE
Q ss_conf 97898999998987188599982644692889999986-----------------------165-----------46488
Q gi|254780947|r 819 DPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQS-----------------------EVP-----------ELKIA 864 (1187)
Q Consensus 819 ~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~-----------------------l~p-----------~~~i~ 864 (1187)
+..-.-.-+..-+..||||-+-++.=.+-+..|..+.+ .-+ ..-|+
T Consensus 228 ~~~~~~~l~~~~~~~~~~~LVF~~SR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~L~~~l~~GVa 307 (736)
T PRK02362 228 SKDEDLNLVLDTLDEGGQCLVFVSSRRNAEAFAKRAASALKKALSAEEREALAGIAEEIREVSETDTSKVLADCVRSGAA 307 (736)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEE
T ss_conf 64058999999997399069998249999999999987524215756688999999999734442035999999960948
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC----CC-----CHHHHHHHHCCCCC--C
Q ss_conf 8613467478999999996388757976102003633223326676250235----88-----60455322103567--6
Q gi|254780947|r 865 MAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF----GL-----AQLYQLRGRVGRSK--I 933 (1187)
Q Consensus 865 vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~----GL-----aqlyQlrGRVGRs~--~ 933 (1187)
+-|.=|+..+=+-|-..|-+|.+.||+||+=.-.|+..|- -|.||.+-.+| |. ++..|+-||-||-. .
T Consensus 308 fHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPA-r~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~D~ 386 (736)
T PRK02362 308 FHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPA-RRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRLDP 386 (736)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCE-EEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCCCC
T ss_conf 5159999899999999998799838972516650557852-699980436736988833688999999985248998898
Q ss_pred CCEEEEEECCCC
Q ss_conf 736999966888
Q gi|254780947|r 934 ASFALFLLPENR 945 (1187)
Q Consensus 934 ~ayayl~~~~~~ 945 (1187)
.++||++.++..
T Consensus 387 ~G~aili~~~~~ 398 (736)
T PRK02362 387 YGEAVLLAKSYD 398 (736)
T ss_pred CCEEEEEECCHH
T ss_conf 862999967827
No 30
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.82 E-value=1.4e-16 Score=146.51 Aligned_cols=312 Identities=21% Similarity=0.234 Sum_probs=235.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH---------CCCCEEEEEECHHHH
Q ss_conf 98998488888744899999998760598854144316654324899999998751---------127549998243665
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV---------MNGLQVAVIAPTTLL 686 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav---------~~gkQvavlvPTTiL 686 (1187)
+=|.+.|. +.||=|..||..+.+ ++ |-|||---|.||||-|.=.++-.. .+|-+|.++.|+-=|
T Consensus 24 ~wf~~~~~-~p~~~Q~~a~~~i~~----G~--~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPLkAL 96 (878)
T PRK13767 24 EWFKRKFG-TFTPPQRYAIPLIHE----GK--NVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPLRAL 96 (878)
T ss_pred HHHHHCCC-CCCHHHHHHHHHHHC----CC--CEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHH
T ss_conf 99985379-999899999999967----99--889989998139999999999999850003677887289996847988
Q ss_pred HHHHHHHHH---HHHC---------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCC-C--CCCCC
Q ss_conf 558999999---8606---------789833541066630256777753122576089852----065427-8--52023
Q gi|254780947|r 687 VRQHFRLFS---ERFQ---------GFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNP-K--ITFAN 747 (1187)
Q Consensus 687 a~QH~~tf~---~Rf~---------~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~-~--v~f~~ 747 (1187)
|..-+++.. +++. -.||+|++=+-=.+.++.++.++.- -||+|-| |-||+. + -.|++
T Consensus 97 ~~D~~r~L~~pl~~i~~~~~~~g~~~~~i~v~vr~GDT~~~er~r~~~~p----p~ILiTTPEsL~lll~~~~~~~~l~~ 172 (878)
T PRK13767 97 NNDIHRNLEEPLEEIREIAKERGIELPEIRHAVRTGDTSSYEKQKMLRKP----PHILITTPETLAILLNSPKFREKLRT 172 (878)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEECCHHHHHHHHCCHHHHHHHCC
T ss_conf 99999988869999999987527887774477636999999999997489----98798798999999549679998558
Q ss_pred CCEEEEECHHHH-----HHHH---HHHHHHCC-CCCCEEEEECCCC-CHHHHHHHHCC------CCCCEEECCCCCCCCE
Q ss_conf 656997222330-----0888---99886316-7884899953534-08899997122------2541220157887753
Q gi|254780947|r 748 LGLIIIDEEQHF-----GVKH---KEALKETH-TGVHVLTLSATPI-PRTLQLAITGV------RELSLISMPPINRIAC 811 (1187)
Q Consensus 748 LgLliiDEEqrF-----GV~~---Ke~lk~~~-~~vdvLtlsATPI-PRTL~msl~g~------rd~S~i~tpP~~R~~v 811 (1187)
|-.+||||=|-+ |+.- -|+|+.+- .+.-...||||-= |....--|.|. |+-.++.++...+..+
T Consensus 173 l~~VIvDE~H~l~~~kRG~~l~l~L~RL~~~~~~~~~riglSATv~~~~~~a~~L~g~~~~g~~r~~~iv~~~~~k~~~~ 252 (878)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELVGGEFVRIGLSATIEPLEEVAKFLVGYNDDGEPRDCEIVDTRFAKPIDI 252 (878)
T ss_pred CCEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEE
T ss_conf 99999817167524774589999999999866899879999646489999999851556679998528954687787426
Q ss_pred EEEEEE-----CCHHHHH----HHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHH
Q ss_conf 799985-----7978989----9999898718859998264469288999998616546----48886134674789999
Q gi|254780947|r 812 RTSISI-----FDPLVVR----ETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPEL----KIAMAHGQMSPKNLEDK 878 (1187)
Q Consensus 812 ~T~v~~-----~~~~~i~----~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~----~i~vaHGqm~~~~le~~ 878 (1187)
+...-. ....-+. +.+...+..++.+-.-+|.=..-|.++..|+++.|+. .|++-||-|+..+=++|
T Consensus 253 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~i~~~~~tLvF~NtR~~aE~~~~~L~~~~~~~~~~~~i~~HHgSls~e~R~~v 332 (878)
T PRK13767 253 KVLCPVDDLIHTPAEEISEALYETLDELIQEHRTTLIFTNTRSGAERVVYKLRKRYPEEYDEDNIGAHHSSLSREVRLEV 332 (878)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
T ss_conf 88445621245885568999999999999838977999155899999999999853430675432220177899999999
Q ss_pred HHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCC----CEEEEEEC
Q ss_conf 99996388757976102003633223326676250235886045532210356767----36999966
Q gi|254780947|r 879 MNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIA----SFALFLLP 942 (1187)
Q Consensus 879 m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~----ayayl~~~ 942 (1187)
...|-+|+..++|||+=-|-||||..++..|-..+-+ |.|-|-| |||||+|+ +-++|+.-
T Consensus 333 E~~lk~G~l~~vV~TsSLELGIDiG~Vd~Viq~gsP~-svarllQ---R~GRsGH~~g~~s~g~~vp~ 396 (878)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK-SVSRLLQ---RIGRAGHRLGEVSKGRIIVV 396 (878)
T ss_pred HHHHHCCCCCEEEEECHHHCCCCCCCCCEEEECCCCH-HHHHHHH---HHCCCCCCCCCEEEEEEEEC
T ss_conf 9998579986899827365077777525899758961-1899999---83357899998046999979
No 31
>PRK00254 ski2-like helicase; Provisional
Probab=99.79 E-value=3.3e-15 Score=135.88 Aligned_cols=315 Identities=21% Similarity=0.257 Sum_probs=216.3
Q ss_pred CCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECHHHHH
Q ss_conf 784678989984888-88744899999998760598854144316654324899999998751-1275499982436655
Q gi|254780947|r 610 VSQDLYSQFIKRFPH-VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-MNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 610 ~d~~~~~eFe~~Fpy-eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-~~gkQvavlvPTTiLa 687 (1187)
.|....+-| ..... +.-|=|..|++. -.-.++ +=|+|-=-|=|||-||.=|+++.+ ..|+.+.+++|+-=||
T Consensus 8 ~~~~~~~~~-~~~gI~~l~p~Q~e~l~~---g~~~g~--NllvsaPT~sGKTlvAElail~~~l~~~~k~iyi~P~kALa 81 (717)
T PRK00254 8 VDERIKEIL-KERGIEELYPPQAEALTS---GVLEGK--NLLIAIPTASGKTLIAEIAMVNKLLREGGKAVYLVPLKALA 81 (717)
T ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHH---HHCCCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998999999-976987268999999874---233698--18998998874899999999999985299299992679999
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCC-CCCCCEEEEECHHHHH--
Q ss_conf 589999998606789833541066630256777753122576089852----065427852-0236569972223300--
Q gi|254780947|r 688 RQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKIT-FANLGLIIIDEEQHFG-- 760 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~-f~~LgLliiDEEqrFG-- 760 (1187)
+|-|..|++ |..++++|+.++--..... . .-|+-||+|-| +.|+..... +.++||+||||=|=.|
T Consensus 82 ~EK~~~f~~-~~~~g~~V~~~tGd~~~~~--~-----~l~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH~igD~ 153 (717)
T PRK00254 82 EEKFREFKD-WEVLGLRVAMATGDYDSKD--E-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIHLIGSR 153 (717)
T ss_pred HHHHHHHHH-HHHCCCEEEEEECCCCCCC--C-----CCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEEECCCC
T ss_conf 999999987-7744988989748988870--1-----0468999998889999999716256532698999760788898
Q ss_pred ---HHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEC------CH-----HHHHH
Q ss_conf ---8889988631678848999535-340889999712225412201578877537999857------97-----89899
Q gi|254780947|r 761 ---VKHKEALKETHTGVHVLTLSAT-PIPRTLQLAITGVRELSLISMPPINRIACRTSISIF------DP-----LVVRE 825 (1187)
Q Consensus 761 ---V~~Ke~lk~~~~~vdvLtlsAT-PIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~------~~-----~~i~~ 825 (1187)
..=-.-+-++..++-++.|||| |=|.-|.-=| |. .++.+ ...-.|.+.+|.-. |. ....+
T Consensus 154 ~RG~~lE~~l~~l~~~~qiIgLSATi~N~~~la~WL-~a---~~~~~-~~RPVpL~~~v~~~~~~~~~~~~~~~~~~~~~ 228 (717)
T PRK00254 154 DRGATLEFILTHMLGRAQIIGLSATIGNPEELAEWL-NA---ELIVS-DWRPVKLRKGVFYQGFVFWEDGKIDRYNSWEE 228 (717)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHH-CC---CCCCC-CCCCCCEEEEEEECCEEEECCCCCHHHHHHHH
T ss_conf 740999999995100366999963349989999982-88---52156-88577527644206601104562054430789
Q ss_pred HHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCC-------------------------------CCCEEEEECCCCHHH
Q ss_conf 9998987188599982644692889999986165-------------------------------464888613467478
Q gi|254780947|r 826 TLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVP-------------------------------ELKIAMAHGQMSPKN 874 (1187)
Q Consensus 826 ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p-------------------------------~~~i~vaHGqm~~~~ 874 (1187)
-+...+.+|+|+-+-+|.=.+-+..|..|.+.++ ...|++-|+-|+..+
T Consensus 229 l~~~~~~~~~~~LVF~~tR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~l~~GVafHHAGL~~~~ 308 (717)
T PRK00254 229 LVYDAVKRGKGALIFVNMRRKAEKTALELAKKIKNLLTKPELRELKELADSLEENPTNEKLAKALRGGVAFHHAGLGRDE 308 (717)
T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHCCCCCHHH
T ss_conf 99999974998189995579999999999998876307688999999999987376518999999708312158999889
Q ss_pred HHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECH---HH-----CCCCHHHHHHHHCCCC--CCCCEEEEEECCC
Q ss_conf 999999996388757976102003633223326676250---23-----5886045532210356--7673699996688
Q gi|254780947|r 875 LEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA---DM-----FGLAQLYQLRGRVGRS--KIASFALFLLPEN 944 (1187)
Q Consensus 875 le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~a---d~-----~GLaqlyQlrGRVGRs--~~~ayayl~~~~~ 944 (1187)
-+-|=..|-+|.+.||+||+=.-.|+..|.- |-||.+- +. +.-++..|+-||-||. +..++|+++..+.
T Consensus 309 R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr-~VIi~~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~iii~~~~ 387 (717)
T PRK00254 309 RVLVEDNFRKGLIKVVVATPTLSAGINTPAF-RVIIRDTWRYSEFGMERIPVLEIQQMMGRAGRPKYDEVGEAIIVSTTE 387 (717)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHCCCCCCCE-EEEEECCEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 9999999987995899816446504577605-999926567079972378753688862506999878885089995485
No 32
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.78 E-value=3e-16 Score=143.98 Aligned_cols=316 Identities=22% Similarity=0.343 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88874489999999876059885414431665432489999999875112754999824366555899999986067898
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
=..||-|.+|-+.+..-|.+-++| ||--=-|-||||.-.-+.=.|...|--|++-.|-+=.+---|.-++.-|++ .
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~--lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~--~ 171 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDT--LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSN--C 171 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCC--C
T ss_conf 532724789999999998715768--999742798510169999999965986998468610117778999976214--9
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCC-CCEEEEECHHHHHHHHHHHH-----HHCCCCCCEE
Q ss_conf 33541066630256777753122576089852065427852023-65699722233008889988-----6316788489
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFAN-LGLIIIDEEQHFGVKHKEAL-----KETHTGVHVL 777 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~-LgLliiDEEqrFGV~~Ke~l-----k~~~~~vdvL 777 (1187)
.|..|--=..++-+ +. =||--||.|| +||+ .-|+||||=--|--..-..| |+.|.+--.+
T Consensus 172 ~I~~Lyg~S~~~fr---------~p-lvVaTtHQLl----rFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR---------AP-LVVATTHQLL----RFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CEEEEECCCCHHCC---------CC-EEEEEHHHHH----HHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 86667258713133---------44-7997668888----8886433899830245656678889999997512367369
Q ss_pred EEECCCCCHHHHHH-HHCCCCCCEEECCC-CCCCCEEEEE--EECCHHHHH--------HHHHHHHHHCCEEEEEECCCC
Q ss_conf 99535340889999-71222541220157-8877537999--857978989--------999989871885999826446
Q gi|254780947|r 778 TLSATPIPRTLQLA-ITGVRELSLISMPP-INRIACRTSI--SIFDPLVVR--------ETLMREYYRGGQSFYVCPRLS 845 (1187)
Q Consensus 778 tlsATPIPRTL~ms-l~g~rd~S~i~tpP-~~R~~v~T~v--~~~~~~~i~--------~ai~rEl~RgGQvf~v~nrv~ 845 (1187)
.||||| |++|.-. +.|=+-.--|.+-= -.-+||--|+ ..|+..+-| .-|..-..-|--|+.-.|.|+
T Consensus 238 ylTATp-~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 238 YLTATP-TKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred EEECCC-HHHHHHHHHHCCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 996488-0788887540775676344654389989874288644777766444778999999998743882899925058
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHH--CCCCHHHH
Q ss_conf 9288999998616546488861346747899999999638875797610200363322332667625023--58860455
Q gi|254780947|r 846 DLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADM--FGLAQLYQ 923 (1187)
Q Consensus 846 ~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~--~GLaqlyQ 923 (1187)
.++..++-+++.+|.-+|+..|.+- ...+|+| ..|-+|++++|+.|||.|-|+-.||+.+-++ +|++ |-=|-|-|
T Consensus 317 ~~eq~a~~lk~~~~~~~i~~Vhs~d-~~R~EkV-~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-gaeh~vfTesaLVQ 393 (441)
T COG4098 317 TMEQVAAALKKKLPKETIASVHSED-QHRKEKV-EAFRDGKITLLITTTILERGVTFPNVDVFVL-GAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC-CCHHHHH-HHHHCCCEEEEEEEEHHHCCCCCCCCEEEEE-CCCCCCCCHHHHHH
T ss_conf 8999999998618864215653367-0178999-9987586389998440332664356239995-47764201889999
Q ss_pred HHHHCCCCCCCCE---EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 3221035676736---99996688888988999999999725565
Q gi|254780947|r 924 LRGRVGRSKIASF---ALFLLPENRPLTAAAQKRLRILQSLNTLG 965 (1187)
Q Consensus 924 lrGRVGRs~~~ay---ayl~~~~~~~l~~~a~kRL~ai~~~~~lG 965 (1187)
+-||||||..+.- +||-|-. |..-.+--+-|++++.||
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~----skaM~~A~keIk~MN~lg 434 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGK----SKAMKQARKEIKEMNKLG 434 (441)
T ss_pred HHHHCCCCCCCCCCCEEEEECCC----HHHHHHHHHHHHHHHHHH
T ss_conf 75231678768987589996463----389999999999998876
No 33
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.78 E-value=1.7e-17 Score=153.58 Aligned_cols=152 Identities=30% Similarity=0.360 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC---CCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7448999999987605988541443166543248999999987511---2754999824366555899999986067898
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM---NGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~---~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
||-|..||+.+.+ -.|-++|+.-|.|||++|+-++...+. .|.|+.++|||.-|++|+++.|++.+..+++
T Consensus 1 ~~~Q~~~i~~~~~------g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~ 74 (167)
T pfam00270 1 TPIQAEAIPAILE------GKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGL 74 (167)
T ss_pred CHHHHHHHHHHHC------CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9459999999976------9978998899975899999999999874778987999906088888999886432102676
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHH-----HCCCCCCCCCCEEEEECHHH-----HHHHHHHHHHHCCCC
Q ss_conf 33541066630256777753122576089852065-----42785202365699722233-----008889988631678
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHAL-----LNPKITFANLGLIIIDEEQH-----FGVKHKEALKETHTG 773 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~l-----l~~~v~f~~LgLliiDEEqr-----FGV~~Ke~lk~~~~~ 773 (1187)
++..+..-.+..+..+.+. ...||+|+|+.- ....+.|.++++||+||-|+ ||..-+.-++.++.+
T Consensus 75 ~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~~g~~~~~il~~l~~~ 150 (167)
T pfam00270 75 KVALLYGGDSPKEQLRKLK----KGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPK 150 (167)
T ss_pred CEEEECCCCCHHHHHHHHC----CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 4046417861788987640----577079947899999998033121100389988088673358299999999857999
Q ss_pred CCEEEEECCCCCHHHH
Q ss_conf 8489995353408899
Q gi|254780947|r 774 VHVLTLSATPIPRTLQ 789 (1187)
Q Consensus 774 vdvLtlsATPIPRTL~ 789 (1187)
+.++.||||+ |+.+.
T Consensus 151 ~q~v~~SAT~-~~~~~ 165 (167)
T pfam00270 151 RQILLLSATL-PRNVE 165 (167)
T ss_pred CCEEEEECCC-CHHHH
T ss_conf 9789997269-97785
No 34
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.5e-15 Score=136.81 Aligned_cols=289 Identities=25% Similarity=0.304 Sum_probs=199.2
Q ss_pred CEEEECCCCCCHHHHHHHH-HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 1443166543248999999-987511275499982436655589999998606789833541066630256777753122
Q gi|254780947|r 648 DRLICGDVGFGKTEIALRA-AFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE 726 (1187)
Q Consensus 648 DRLiCGDVGfGKTEVA~RA-afkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~ 726 (1187)
+-|||=--|-|||=||+=- |-.-.-.++-|.+|+||-=|+.||.++|++=+.-=|-.|..|+-=.+|.+.++.-.
T Consensus 31 NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~---- 106 (542)
T COG1111 31 NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA---- 106 (542)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHH----
T ss_conf 8389952875079999999999987458848996589517999999999985898433231117778688999875----
Q ss_pred CCCEEEEECHHHHCCC-----CCCCCCCEEEEECHHHHH------HHHHHHHHHCCCCCCEEEEECCCC---------CH
Q ss_conf 5760898520654278-----520236569972223300------888998863167884899953534---------08
Q gi|254780947|r 727 GQVDIVIGTHALLNPK-----ITFANLGLIIIDEEQHFG------VKHKEALKETHTGVHVLTLSATPI---------PR 786 (1187)
Q Consensus 727 G~idiviGTH~ll~~~-----v~f~~LgLliiDEEqrFG------V~~Ke~lk~~~~~vdvLtlsATPI---------PR 786 (1187)
+-.|++-|-..+.+| +.-+|.-|+|+||-||== --.||.++. ..|-.+|.|||||= =.
T Consensus 107 -~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ilgLTASPGs~~ekI~eV~~ 184 (542)
T COG1111 107 -KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPLILGLTASPGSDLEKIQEVVE 184 (542)
T ss_pred -HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf -17789956387776876176676780589862355413760699999999982-5684379872389998799999998
Q ss_pred HHHH----------------------------------------------HHHCCCCCCEEECCC-CC----------CC
Q ss_conf 8999----------------------------------------------971222541220157-88----------77
Q gi|254780947|r 787 TLQL----------------------------------------------AITGVRELSLISMPP-IN----------RI 809 (1187)
Q Consensus 787 TL~m----------------------------------------------sl~g~rd~S~i~tpP-~~----------R~ 809 (1187)
-|++ .|--++|+-++..-- .. |.
T Consensus 185 nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~ 264 (542)
T COG1111 185 NLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRL 264 (542)
T ss_pred HCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHH
T ss_conf 37954289845788517775140424899636858999999999999999999999769532357310768999999899
Q ss_pred CEEEEEEECCH---HHHHHHHH------------------------------------------------HHHHHCCEEE
Q ss_conf 53799985797---89899999------------------------------------------------8987188599
Q gi|254780947|r 810 ACRTSISIFDP---LVVRETLM------------------------------------------------REYYRGGQSF 838 (1187)
Q Consensus 810 ~v~T~v~~~~~---~~i~~ai~------------------------------------------------rEl~RgGQvf 838 (1187)
........+-. .++.+|+. +++.+--+.+
T Consensus 265 ~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~ 344 (542)
T COG1111 265 IMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESG 344 (542)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 86357617888999999999888899999985086999999999998750352077898753820479999999740036
Q ss_pred EEECC--------------------------CCCHHHHHHHHHHHCCCCC-EEEE---EC---CCCHHHHHHHHHHHHCC
Q ss_conf 98264--------------------------4692889999986165464-8886---13---46747899999999638
Q gi|254780947|r 839 YVCPR--------------------------LSDLEKCYTFLQSEVPELK-IAMA---HG---QMSPKNLEDKMNAFYEG 885 (1187)
Q Consensus 839 ~v~nr--------------------------v~~i~~~~~~l~~l~p~~~-i~va---HG---qm~~~~le~~m~~F~~~ 885 (1187)
+-||. -++-+.+++.|.+.-|.++ .=|+ -+ -|+.+|=-++.-+|-+|
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G 424 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG 424 (542)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 88961899999999997238985599996147589999999985287520688611454556665888999999998657
Q ss_pred CCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 87579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r 886 QYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 886 ~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
+|+|||||+|=|-|||||.++-+|-++|--=-. ---|=|||-||+ +.++.|.|+-.+
T Consensus 425 e~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeI-R~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEI-RSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred CCEEEEECCCCCCCCCCCCCCEEEEECCCCHHH-HHHHHHCCCCCC-CCCEEEEEEECC
T ss_conf 851899812322467887656799956885788-999860744557-797499999658
No 35
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.72 E-value=8e-14 Score=125.25 Aligned_cols=310 Identities=22% Similarity=0.213 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 744899999998760598854-14431665432489999999875112----7549998243665558999999860678
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLM-DRLICGDVGFGKTEIALRAAFIAVMN----GLQVAVIAPTTLLVRQHFRLFSERFQGF 701 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PM-DRLiCGDVGfGKTEVA~RAafkav~~----gkQvavlvPTTiLa~QH~~tf~~Rf~~~ 701 (1187)
.+=|.+|.+.. ++..+++ .=.+|.=-|+||||++|+=|+....+ .-.+-.+.|++.+.+|-|+.+++.|..+
T Consensus 197 ~~~~~~~~~~~---~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 197 YELQEKALELI---LRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred HHHHHHHHHHH---HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 35567999998---732255751899916888719999999999753113545628996558999999999998751235
Q ss_pred CCCEE-EECCC----CCCHHH-----HHHHHHHCC-CCCEEEEECHHHHCCCCCCCC--------CCEEEEECHHHHHHH
Q ss_conf 98335-41066----630256-----777753122-576089852065427852023--------656997222330088
Q gi|254780947|r 702 SVRIA-SISRF----VQTKEA-----ALHKKSITE-GQVDIVIGTHALLNPKITFAN--------LGLIIIDEEQHFGVK 762 (1187)
Q Consensus 702 pv~i~-~lsRf----~~~~e~-----~~i~~~l~~-G~idiviGTH~ll~~~v~f~~--------LgLliiDEEqrFGV~ 762 (1187)
-+.-. ..|-- ....++ -.+....+. .--=+++.|+..+..-+.+.. ..++|.||=|=+.=.
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCC
T ss_conf 54331001310255651701002258881242236204522206999855740466725778876467787427541654
Q ss_pred ----HHHHHH--HCCCCCCEEEEECCCCC--HHHHHHHHCCCCC-CEEEC-CCCCCCCEEEEE--EECCHH---HHHHHH
Q ss_conf ----899886--31678848999535340--8899997122254-12201-578877537999--857978---989999
Q gi|254780947|r 763 ----HKEALK--ETHTGVHVLTLSATPIP--RTLQLAITGVREL-SLISM-PPINRIACRTSI--SIFDPL---VVRETL 827 (1187)
Q Consensus 763 ----~Ke~lk--~~~~~vdvLtlsATPIP--RTL~msl~g~rd~-S~i~t-pP~~R~~v~T~v--~~~~~~---~i~~ai 827 (1187)
.=+++- ..+.++-|+-||||+=| ++.-+++.+-... +...+ -|....+..... ..+.+. -..+-+
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECCHHHHCCCHHHHHHHH
T ss_conf 30899999999999689978999278997999999998503761213443233455433000001113203037766556
Q ss_pred HHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH----HCCCCCEEEECCCEECCCCCC
Q ss_conf 9898718859998264469288999998616546488861346747899999999----638875797610200363322
Q gi|254780947|r 828 MREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAF----YEGQYDVLLSTSIVESGLDLP 903 (1187)
Q Consensus 828 ~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F----~~~~~dvLv~TtIiEsGlDip 903 (1187)
..+..-|+.|..|+|-|....++...|++..| .+..-|++|..+.-++.+... -.++..|+|||-.||.|+||-
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred HHHHCCCCCEEEEEECHHHHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCC
T ss_conf 77642588289999278999999999855589--5799886355766999999998887537862999834599886266
Q ss_pred CCCEEEEECHHHCCCCHHHHHHHHCCCCC--CCCEEEEEECCCC
Q ss_conf 33266762502358860455322103567--6736999966888
Q gi|254780947|r 904 KANTMIVQRADMFGLAQLYQLRGRVGRSK--IASFALFLLPENR 945 (1187)
Q Consensus 904 ~aNTiii~~ad~~GLaqlyQlrGRVGRs~--~~ayayl~~~~~~ 945 (1187)
...||-+-| .+.-|=|.=|||.|.+ ..+++|.....+.
T Consensus 512 -fd~mITe~a---PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 512 -FDVLITELA---PIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred -CCEEEECCC---CHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf -684663478---7567999877774156666871699834667
No 36
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=3.3e-16 Score=143.60 Aligned_cols=165 Identities=27% Similarity=0.303 Sum_probs=132.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 8488888744899999998760598854144316654324899999998751127--54999824366555899999986
Q gi|254780947|r 620 KRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSER 697 (1187)
Q Consensus 620 ~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~R 697 (1187)
....+..+|-|..|++.+.... .+-+||+..|.|||++++.+++.....+ .+|.+++||..|+.|.++.|.+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~-----~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGL-----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CCCCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 1379999988999999998389-----98899899996099999999999863389975999908599999999886010
Q ss_pred HCCCC-CCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-----HHHHCCCCCCCCCCEEEEECHHHHHH-HHHHHH---
Q ss_conf 06789-833541066630256777753122576089852-----06542785202365699722233008-889988---
Q gi|254780947|r 698 FQGFS-VRIASISRFVQTKEAALHKKSITEGQVDIVIGT-----HALLNPKITFANLGLIIIDEEQHFGV-KHKEAL--- 767 (1187)
Q Consensus 698 f~~~p-v~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-----H~ll~~~v~f~~LgLliiDEEqrFGV-~~Ke~l--- 767 (1187)
+.... ..+..++. ......++.+.++..+|+|+| +.+......+.+++++||||-|++.- .+...+
T Consensus 78 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~ 153 (201)
T smart00487 78 GPSLGLKVVGLYGG----DSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred CCCCEEEEEEEECC----CCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 21020445565247----73799999997599989995589999999727545254319999896775125709999999
Q ss_pred -HHCCCCCCEEEEECCCC---CHHHHHHHH
Q ss_conf -63167884899953534---088999971
Q gi|254780947|r 768 -KETHTGVHVLTLSATPI---PRTLQLAIT 793 (1187)
Q Consensus 768 -k~~~~~vdvLtlsATPI---PRTL~msl~ 793 (1187)
+.+..+..++-|||||+ ...+.+-+.
T Consensus 154 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 183 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 996799997899924898689999999789
No 37
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.70 E-value=4.1e-16 Score=142.89 Aligned_cols=128 Identities=26% Similarity=0.447 Sum_probs=117.1
Q ss_pred CEEEEEEECCH---HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 53799985797---898999998987188599982644692889999986165464888613467478999999996388
Q gi|254780947|r 810 ACRTSISIFDP---LVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQ 886 (1187)
Q Consensus 810 ~v~T~v~~~~~---~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~ 886 (1187)
|+.+++.+-++ ..+.+.|.+.+.+|.++...+|.++.++.++..|++ ++.++...||.|+..+-+++|..|-+|+
T Consensus 1 ~~~~~~~~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~R~~~~~~F~~~~ 78 (131)
T cd00079 1 PIKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGE 78 (131)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 92289993866999999999999997899099997889999999999955--8998999989999999999999977540
Q ss_pred CCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 757976102003633223326676250235886045532210356767369999
Q gi|254780947|r 887 YDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFL 940 (1187)
Q Consensus 887 ~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~ 940 (1187)
++|||||.+.+.|||+|+||++|+.+.. +.+++++|..||+||.+++++||++
T Consensus 79 ~~ilv~t~~~~~Gldl~~~~~vI~~~~~-~s~~~~~Q~~GR~~R~gq~~~~~~~ 131 (131)
T cd00079 79 IVVLVATDVIARGIDLPNVSVVINYDLP-WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEEEEEECCEECCCCCCCCEEEEECCC-CCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 1048875112003661028799997899-6989999897216708996379979
No 38
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=1.3e-14 Score=131.31 Aligned_cols=131 Identities=34% Similarity=0.444 Sum_probs=112.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHC
Q ss_conf 1443166543248999999987511--27549998243665558999999860678983354106663025677775312
Q gi|254780947|r 648 DRLICGDVGFGKTEIALRAAFIAVM--NGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSIT 725 (1187)
Q Consensus 648 DRLiCGDVGfGKTEVA~RAafkav~--~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~ 725 (1187)
|-|||+..|.|||.+|+-++..... .+++|.++|||..|++|.++.|...+ +.+..+....+..+..+.. ...
T Consensus 2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELF-GEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHH----HHH
T ss_conf 99998899717999999999999975689769997467999999999999974-8871799996136367789----874
Q ss_pred CCCCEEEEECHHHH-----CCCCCCCCCCEEEEECHHH-----HHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 25760898520654-----2785202365699722233-----0088899886316788489995353
Q gi|254780947|r 726 EGQVDIVIGTHALL-----NPKITFANLGLIIIDEEQH-----FGVKHKEALKETHTGVHVLTLSATP 783 (1187)
Q Consensus 726 ~G~idiviGTH~ll-----~~~v~f~~LgLliiDEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATP 783 (1187)
.+..+|+|+|..-+ +..+.+.+++++||||-|+ ||...+..++.++.+..++-|||||
T Consensus 77 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSATp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 58984998288999999973876555100999988887643796999999999679999489982899
No 39
>KOG0354 consensus
Probab=99.63 E-value=6.4e-14 Score=126.01 Aligned_cols=81 Identities=30% Similarity=0.464 Sum_probs=68.2
Q ss_pred CCCCEEEEEC----CCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf 5464888613----467478999999996388757976102003633223326676250235886045532210356767
Q gi|254780947|r 859 PELKIAMAHG----QMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIA 934 (1187)
Q Consensus 859 p~~~i~vaHG----qm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ 934 (1187)
|+.=||-++| .|+.++=-.+|.+|-+|+++|||||+|-|-|||||-+|-+|-+++--= ==++-|=||| ||- +.
T Consensus 443 ~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~sn-pIrmIQrrGR-gRa-~n 519 (746)
T KOG0354 443 AEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSN-PIRMVQRRGR-GRA-RN 519 (746)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCEEEEECCCCC-HHHHHHHHCC-CCC-CC
T ss_conf 02156035445444457899999999985798027998101004677421128999657766-8899998631-010-18
Q ss_pred CEEEEEEC
Q ss_conf 36999966
Q gi|254780947|r 935 SFALFLLP 942 (1187)
Q Consensus 935 ayayl~~~ 942 (1187)
++|+|++.
T Consensus 520 s~~vll~t 527 (746)
T KOG0354 520 SKCVLLTT 527 (746)
T ss_pred CEEEEEEC
T ss_conf 76999972
No 40
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.62 E-value=1.7e-12 Score=114.94 Aligned_cols=320 Identities=23% Similarity=0.325 Sum_probs=222.5
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEEECHHHHHHH
Q ss_conf 4678989984888-88744899999998760598854144316654324899999998751127-549998243665558
Q gi|254780947|r 612 QDLYSQFIKRFPH-VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG-LQVAVIAPTTLLVRQ 689 (1187)
Q Consensus 612 ~~~~~eFe~~Fpy-eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g-kQvavlvPTTiLa~Q 689 (1187)
.+-..++...++. |.=|-|..|+....-+ ==|=|||==-|=|||=||+=|+-.....| .-|.++|||.=||+|
T Consensus 17 ~~~v~~i~~~~~~~el~~~qq~av~~~~~~-----~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~E 91 (766)
T COG1204 17 DDRVLEILKGDGIDELFNPQQEAVEKGLLS-----DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEE 91 (766)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-----CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
T ss_conf 078998860488477557899874111257-----986799767888669999999999998559838999075999999
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCCCCC-CCCCCEEEEECHHHHHHHH-
Q ss_conf 99999986067898335410666302567777531225760898520----65427852-0236569972223300888-
Q gi|254780947|r 690 HFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNPKIT-FANLGLIIIDEEQHFGVKH- 763 (1187)
Q Consensus 690 H~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~~v~-f~~LgLliiDEEqrFGV~~- 763 (1187)
-|++|+ ||+.|+++|+++.+=..... + .-+.-||||.|- .++.+... ..+.+||||||=|--|=..
T Consensus 92 k~~~~~-~~~~~GirV~~~TgD~~~~~-----~--~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 92 KYEEFS-RLEELGIRVGISTGDYDLDD-----E--RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHH-HHHHCCCEEEEECCCCCCCH-----H--HHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCC
T ss_conf 999866-68865977999648865553-----3--414588799746786676506753334016899942101487565
Q ss_pred ---HH----HHHHCCCCCCEEEEECCCCCHHHHHH-HHCCCCC-CEEECCCCCCC--CEEEEEEEC---------CHHHH
Q ss_conf ---99----88631678848999535340889999-7122254-12201578877--537999857---------97898
Q gi|254780947|r 764 ---KE----ALKETHTGVHVLTLSATPIPRTLQLA-ITGVREL-SLISMPPINRI--ACRTSISIF---------DPLVV 823 (1187)
Q Consensus 764 ---Ke----~lk~~~~~vdvLtlsATPIPRTL~ms-l~g~rd~-S~i~tpP~~R~--~v~T~v~~~---------~~~~i 823 (1187)
.| +++.+-.++-++.|||| +|.--..| ..+.... |.---=|.-|. ..+.+.... .+...
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSAT-lpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSAT-LPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CCEEHHHHHHHHHHCCCEEEEEEEEE-CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 86402279888852755179887311-68889999985883555677886201577653179871476434542105799
Q ss_pred HHHHHHHHHHCCEEE-EEECCCCCHHHHH------------------------------------HHHHHHCCCCCEEEE
Q ss_conf 999998987188599-9826446928899------------------------------------999861654648886
Q gi|254780947|r 824 RETLMREYYRGGQSF-YVCPRLSDLEKCY------------------------------------TFLQSEVPELKIAMA 866 (1187)
Q Consensus 824 ~~ai~rEl~RgGQvf-~v~nrv~~i~~~~------------------------------------~~l~~l~p~~~i~va 866 (1187)
.+.+..=+..||||- |||-|=..+ ..| ..+.+++|. -+++-
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~-~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~-GvafH 320 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAE-KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR-GVAFH 320 (766)
T ss_pred HHHHHHHHHCCCEEEEEEECCCHHH-HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCC
T ss_conf 9999999856986999974572599-999999998751277165430122344211235543221789999972-75411
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC---------CCHHHHHHHHCCCCCCC--C
Q ss_conf 134674789999999963887579761020036332233266762502358---------86045532210356767--3
Q gi|254780947|r 867 HGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG---------LAQLYQLRGRVGRSKIA--S 935 (1187)
Q Consensus 867 HGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G---------LaqlyQlrGRVGRs~~~--a 935 (1187)
|.=|+..+=.-+=-.|-+|++.|||||.=.--|+-.| |-|-||-+..++. -..--||=||-||-.-- +
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCC-CEEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCCC
T ss_conf 2689788999999998669854999545776216886-328999103877577884777641486556767998757778
Q ss_pred EEEEEECCCCCCC
Q ss_conf 6999966888889
Q gi|254780947|r 936 FALFLLPENRPLT 948 (1187)
Q Consensus 936 yayl~~~~~~~l~ 948 (1187)
+++.+........
T Consensus 400 ~~~i~~~~~~~~~ 412 (766)
T COG1204 400 EAIILATSHDELE 412 (766)
T ss_pred CEEEEECCCCCHH
T ss_conf 2799935863155
No 41
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=123.79 Aligned_cols=312 Identities=22% Similarity=0.304 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88874489999999876059885414431665432489999999875112-75499982436655589999998606789
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN-GLQVAVIAPTTLLVRQHFRLFSERFQGFS 702 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~-gkQvavlvPTTiLa~QH~~tf~~Rf~~~p 702 (1187)
=|.+|=|..|++.=+ -.+ -|-||.---+-|||=|+==|-..-+.+ |+...+|||---||.|.|+-|++|++..+
T Consensus 215 ~eLlPVQ~laVe~GL---LeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 215 EELLPVQVLAVEAGL---LEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred CEECCHHHHHHHHCC---CCC--CCEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCC
T ss_conf 443023465566144---057--734999405777514777637387883787289973168763111899999865016
Q ss_pred CCEEE---ECCCCCCHHHHHHHHHHCCCCCEEEEEC----HHHHCCCCCCCCCCEEEEECHHHHHH-----HHH---HHH
Q ss_conf 83354---1066630256777753122576089852----06542785202365699722233008-----889---988
Q gi|254780947|r 703 VRIAS---ISRFVQTKEAALHKKSITEGQVDIVIGT----HALLNPKITFANLGLIIIDEEQHFGV-----KHK---EAL 767 (1187)
Q Consensus 703 v~i~~---lsRf~~~~e~~~i~~~l~~G~idiviGT----H~ll~~~v~f~~LgLliiDEEqrFGV-----~~K---e~l 767 (1187)
.++.. +||.++..+- ...-..-..||++|| .-||-......|.|.++|||=|-.-- +-+ -+|
T Consensus 290 lkvairVG~srIk~~~~p---v~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RL 366 (830)
T COG1202 290 LKVAIRVGMSRIKTREEP---VVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRL 366 (830)
T ss_pred CEEEEEECHHHHCCCCCC---CCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCCCHHHHHHHH
T ss_conf 627888423452246775---35689987767986111078998707855544359965012044010163235289999
Q ss_pred HHCCCCCCEEEEECCC-CCHHHHHHHHCCCCCCEEECC--CCCCCCEEEEEEECCHHHHHHHHHHHHHH------CCEEE
Q ss_conf 6316788489995353-408899997122254122015--78877537999857978989999989871------88599
Q gi|254780947|r 768 KETHTGVHVLTLSATP-IPRTLQLAITGVRELSLISMP--PINRIACRTSISIFDPLVVRETLMREYYR------GGQSF 838 (1187)
Q Consensus 768 k~~~~~vdvLtlsATP-IPRTL~msl~g~rd~S~i~tp--P~~R~~v~T~v~~~~~~~i~~ai~rEl~R------gGQvf 838 (1187)
|.+.+.--.+.||||- =|--|.-.| |.|=. .-+.- |.+|+-|-.--..-.+.+|..-+.||..+ -||..
T Consensus 367 r~l~~~AQ~i~LSATVgNp~elA~~l-~a~lV-~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 367 RYLFPGAQFIYLSATVGNPEELAKKL-GAKLV-LYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred HHHCCCCEEEEEEEECCCHHHHHHHH-CCEEE-EECCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98677774999874338869999883-87258-65588787367066404816777899999999975441137677369
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEE----ECHH
Q ss_conf 982644692889999986165464888613467478999999996388757976102003633223326676----2502
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIV----QRAD 914 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii----~~ad 914 (1187)
.-.|.=..-...|..|..- ..+.+--|+-|+-.+=.+|=.+|.++++++.|.|.-.-.|+|.| |++.|- ...+
T Consensus 445 VFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~ 521 (830)
T COG1202 445 VFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-ASQVIFESLAMGIE 521 (830)
T ss_pred EEECCHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC-HHHHHHHHHHCCCC
T ss_conf 9942166699999886107--86665443798678888899997608755576424564478875-18999999871043
Q ss_pred HCCCCHHHHHHHHCCCC--CCCCEEEEEECCCCCCC
Q ss_conf 35886045532210356--76736999966888889
Q gi|254780947|r 915 MFGLAQLYQLRGRVGRS--KIASFALFLLPENRPLT 948 (1187)
Q Consensus 915 ~~GLaqlyQlrGRVGRs--~~~ayayl~~~~~~~l~ 948 (1187)
.+--...+|+=||-||- |.++--|+++.+.+.-+
T Consensus 522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHC
T ss_conf 278999999850469987233733999955770111
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.3e-11 Score=108.23 Aligned_cols=311 Identities=19% Similarity=0.298 Sum_probs=226.1
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 998488888-7448999999987605988541443166543248999999987511275499982436655589999998
Q gi|254780947|r 618 FIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 618 Fe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~ 696 (1187)
+-.-|.|+. -|+|..+|+.+.+- +|=|+-==-|-||.=..-=.|-. ..| =+.|+.|=-=|-+ .=.+
T Consensus 9 L~~~fGy~~FR~gQ~evI~~~l~g------~d~lvvmPTGgGKSlCyQiPAll--~~G-~TLVVSPLiSLM~----DQV~ 75 (590)
T COG0514 9 LKQVFGYASFRPGQQEIIDALLSG------KDTLVVMPTGGGKSLCYQIPALL--LEG-LTLVVSPLISLMK----DQVD 75 (590)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHCC------CCEEEECCCCCCCCHHHHHHHHH--CCC-CEEEECCHHHHHH----HHHH
T ss_conf 999709130388889999999658------86799853898710674367886--599-7899785688899----9999
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-HHHHCCCC----CCCCCCEEEEECHH---HHH------HH
Q ss_conf 606789833541066630256777753122576089852-06542785----20236569972223---300------88
Q gi|254780947|r 697 RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-HALLNPKI----TFANLGLIIIDEEQ---HFG------VK 762 (1187)
Q Consensus 697 Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-H~ll~~~v----~f~~LgLliiDEEq---rFG------V~ 762 (1187)
++...+|.++.|+-..++.|+..++..+..|.+|++-=+ -||.+..+ +=-.++|++|||-| .+| -.
T Consensus 76 ~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 76 QLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred HHHHCCCEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCHHHH
T ss_conf 99975965204424367877999999986496459998813631768999997088756996217777641774377689
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHH-HHHCCE-EE
Q ss_conf 899886316788489995353408899--99712225412201578877537999857978989999989-871885-99
Q gi|254780947|r 763 HKEALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMRE-YYRGGQ-SF 838 (1187)
Q Consensus 763 ~Ke~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rE-l~RgGQ-vf 838 (1187)
.=-.+++..+++-++.||||-=|+|.. ++..++.+-.++-+- .||-.+.-.|.+.++..-+-+-..+ +.++++ .-
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-fdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GI 234 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-FDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGI 234 (590)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEC-CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999851799977997378986789999998467886648715-89852345564256478889998741324689728
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC
Q ss_conf 98264469288999998616546488861346747899999999638875797610200363322332667625023588
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL 918 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL 918 (1187)
.-|..-..-+.+|++|++- ..+.+.=||-|+..+=+.+=..|.+++.+|+|||.=--.|||-||+-..|=.+.-. -+
T Consensus 235 IYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~-s~ 311 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG-SI 311 (590)
T ss_pred EEEEEHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCCC-CH
T ss_conf 9993377599999999977--97257751898899999999997169986899964624776788840799806998-98
Q ss_pred CHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 604553221035676736999966888
Q gi|254780947|r 919 AQLYQLRGRVGRSKIASFALFLLPENR 945 (1187)
Q Consensus 919 aqlyQlrGRVGRs~~~ayayl~~~~~~ 945 (1187)
.-.||==||-||-...|.|+++|.+..
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 999999713567877021788606300
No 43
>KOG0331 consensus
Probab=99.57 E-value=2.5e-11 Score=106.05 Aligned_cols=347 Identities=21% Similarity=0.235 Sum_probs=231.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH---------HHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 887448999999987605988541443166543248999999987---------51127549998243665558999999
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFI---------AVMNGLQVAVIAPTTLLVRQHFRLFS 695 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafk---------av~~gkQvavlvPTTiLa~QH~~tf~ 695 (1187)
..||=|.+++--++.- =|=..--.-|+|||===+=-|+. .-++|.+|-||+||-=||.|-.+.|.
T Consensus 113 ~PtpIQaq~wp~~l~G------rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~ 186 (519)
T KOG0331 113 KPTPIQAQGWPIALSG------RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAR 186 (519)
T ss_pred CCCHHHHCCCCEECCC------CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 8853441446511268------8657782357862055555799998700444347999869997685999999999999
Q ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHH-----CCCCCCCCCCEEEEECHHH-----HHHHHHH
Q ss_conf 86067898335410666302567777531225760898520654-----2785202365699722233-----0088899
Q gi|254780947|r 696 ERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALL-----NPKITFANLGLIIIDEEQH-----FGVKHKE 765 (1187)
Q Consensus 696 ~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll-----~~~v~f~~LgLliiDEEqr-----FGV~~Ke 765 (1187)
+=-....++.-++.-=.+...|-.-+ +.| |||||||--.| +..+.+.++.-||.||--| |.=.-..
T Consensus 187 ~~~~~~~~~~~cvyGG~~~~~Q~~~l---~~g-vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~ 262 (519)
T KOG0331 187 EFGKSLRLRSTCVYGGAPKGPQLRDL---ERG-VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRK 262 (519)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHH---HCC-CCEEEECCHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCHHHHHH
T ss_conf 97077774079986898863788987---559-81898077178999974885645303999634776631353799999
Q ss_pred HHHHC-CCCCCEEEEECCCCCH-HHHHH--HHC-CCCCCEEEC-CCCCCCCEEEEEEECC---HHHHHHHHHHHHH--HC
Q ss_conf 88631-6788489995353408-89999--712-225412201-5788775379998579---7898999998987--18
Q gi|254780947|r 766 ALKET-HTGVHVLTLSATPIPR-TLQLA--ITG-VRELSLISM-PPINRIACRTSISIFD---PLVVRETLMREYY--RG 834 (1187)
Q Consensus 766 ~lk~~-~~~vdvLtlsATPIPR-TL~ms--l~g-~rd~S~i~t-pP~~R~~v~T~v~~~~---~~~i~~ai~rEl~--Rg 834 (1187)
-|.++ ++...+|.-|||= |. +=++| +.+ -+-..++.. -=.-+..|.-.|...+ ..-...++.++.. .+
T Consensus 263 Il~~i~~~~rQtlm~saTw-p~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~ 341 (519)
T KOG0331 263 ILSQIPRPDRQTLMFSATW-PKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSE 341 (519)
T ss_pred HHHHCCCCCCCEEEEEEEC-CHHHHHHHHHHHCCCEEEEECCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9875589752278886546-488999999984596489961214554433314651126878898879999999735689
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHH
Q ss_conf 85999826446928899999861654648886134674789999999963887579761020036332233266762502
Q gi|254780947|r 835 GQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRAD 914 (1187)
Q Consensus 835 GQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad 914 (1187)
|.|-.-||...+-++++..++..- ......||-++..|=+.++.+|-+|++.|||||-.---|||||.+...|=.+--
T Consensus 342 ~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP 419 (519)
T KOG0331 342 GKVIIFCETKRTCDELARNLRRKG--WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFP 419 (519)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCC
T ss_conf 868999643364999998877517--661550066648899999975026885469881531256887666479967899
Q ss_pred HCCCCHHHHH-HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3588604553-221035676736999966888889889999999997255652489999998511630004611155
Q gi|254780947|r 915 MFGLAQLYQL-RGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSG 990 (1187)
Q Consensus 915 ~~GLaqlyQl-rGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~DleiRGaG~llG~~QsG 990 (1187)
+ =..=|== =||-||+++.+-||.++-... ...|..=.+++++....=......+-+. .++.|+ .|..+.|
T Consensus 420 ~--~vEdYVHRiGRTGRa~~~G~A~tfft~~~--~~~a~~l~~~l~e~~q~v~~~l~~~~~~-~~~~~~-~~~~~~~ 490 (519)
T KOG0331 420 N--NVEDYVHRIGRTGRAGKKGTAITFFTSDN--AKLARELIKVLREAGQTVPPDLLEYARV-SGSGGN-MGGCFGG 490 (519)
T ss_pred C--CHHHHHHHCCCCCCCCCCCEEEEEEEHHH--HHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCCCCC-CCCCCCC
T ss_conf 9--98998865376545788824899972788--7778999999997068787478888762-046877-7788878
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.53 E-value=2.1e-10 Score=98.87 Aligned_cols=318 Identities=20% Similarity=0.221 Sum_probs=237.5
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--------CEEEEEEC
Q ss_conf 8467898998488888744899999998760598854144316654324899999998751127--------54999824
Q gi|254780947|r 611 SQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--------LQVAVIAP 682 (1187)
Q Consensus 611 d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--------kQvavlvP 682 (1187)
+...++-|... =-+.||=|..||..|.+. -+=||+-=-|.||||-|+=++|-..... =.|..+.|
T Consensus 9 ~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G------~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 9 DPRVREWFKRK-FTSLTPPQRYAIPEIHSG------ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred CHHHHHHHHHH-CCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 89999999985-089987899999998589------84699868999737999999999998606888888569999570
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCC-C--CCCCCCCEEEEEC
Q ss_conf 366555899999986067898335410666302567777531225760898520----65427-8--5202365699722
Q gi|254780947|r 683 TTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNP-K--ITFANLGLIIIDE 755 (1187)
Q Consensus 683 TTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~-~--v~f~~LgLliiDE 755 (1187)
=-=|+.--..+...-.+.+++.|++=+-=.+.++.++..++ -=||+|-|- -+|+. . =.|+|+--+||||
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCC----CCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEH
T ss_conf 78887899999999999759844442287886776304699----99689958348999836888999860780999512
Q ss_pred HHHHHHHH--------HHHHHHCCCCCCEEEEECCCCCHH-HHHHHHCCC-CCCEEECCCCCCCCEEEEEEECC------
Q ss_conf 23300888--------998863167884899953534088-999971222-54122015788775379998579------
Q gi|254780947|r 756 EQHFGVKH--------KEALKETHTGVHVLTLSATPIPRT-LQLAITGVR-ELSLISMPPINRIACRTSISIFD------ 819 (1187)
Q Consensus 756 EqrFGV~~--------Ke~lk~~~~~vdvLtlsATPIPRT-L~msl~g~r-d~S~i~tpP~~R~~v~T~v~~~~------ 819 (1187)
=|-+=-.- =|+|+.+-...--.-||||==|=. +--=|+|-+ +..+++.+=..+.-|+..+-..+
T Consensus 158 iHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~ 237 (814)
T COG1201 158 IHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEE 237 (814)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCC
T ss_conf 54543456531343329999851755379754021588899999854789842999745677531799804775000262
Q ss_pred -HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEEC
Q ss_conf -7898999998987188599982644692889999986165464888613467478999999996388757976102003
Q gi|254780947|r 820 -PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVES 898 (1187)
Q Consensus 820 -~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEs 898 (1187)
..-.-+.|...+.+..-+-..-|.-.+-|..+.+|+++.+ ..|.+-||-++..+=..+=.+|-+|+..++||||=-|=
T Consensus 238 ~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 238 LWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 46789999999996168589997272789999999987268-75565316665778999999986688629998064220
Q ss_pred CCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEE---EEEECCC
Q ss_conf 633223326676250235886045532210356767369---9996688
Q gi|254780947|r 899 GLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFA---LFLLPEN 944 (1187)
Q Consensus 899 GlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~aya---yl~~~~~ 944 (1187)
||||-.++-.|-.++-+ +.|-+-| |||||+|+--. +.+++.+
T Consensus 317 GIDiG~vdlVIq~~SP~-sV~r~lQ---RiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 317 GIDIGDIDLVIQLGSPK-SVNRFLQ---RIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCCCCCCEEEEEECCCH-HHHHHHH---HCCCCCCCCCCCCCEEEEECC
T ss_conf 50247742999817938-8888868---503146656886427998167
No 45
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.53 E-value=3.6e-12 Score=112.48 Aligned_cols=282 Identities=20% Similarity=0.240 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCC----CCC
Q ss_conf 89999999876059885414431-6654324899999998751127549998243665558999999860678----983
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLIC-GDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGF----SVR 704 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiC-GDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~----pv~ 704 (1187)
|..|++.+++- =+|=+|+ ---|.||||-|+-.++ ..+..+-++.||.-|+++.|+++++=.+.| .++
T Consensus 2 q~~~~~~~~~~-----~~~~ivitAPTgsGKT~Aa~lp~l---~~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 2 QVATFEALQSK-----DADIIFNTAPTGAGKTLAWLTPLL---HGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred HHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 68999999768-----998699989998569999999997---3898799977789999999999999998744234644
Q ss_pred EEEECCCCCC-----------HHHHH-----HHHHHCCCCCEEEEEC----HHHH-----CCC----CCCCCCCEEEEEC
Q ss_conf 3541066630-----------25677-----7753122576089852----0654-----278----5202365699722
Q gi|254780947|r 705 IASISRFVQT-----------KEAAL-----HKKSITEGQVDIVIGT----HALL-----NPK----ITFANLGLIIIDE 755 (1187)
Q Consensus 705 i~~lsRf~~~-----------~e~~~-----i~~~l~~G~idiviGT----H~ll-----~~~----v~f~~LgLliiDE 755 (1187)
+..+++=... ....+ -.+.+....-+|++-| |-++ .+. --|.+|-.+||||
T Consensus 74 ~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEE
T ss_conf 02114643233444655553434454102566543025899099928899999976201365103999985167477562
Q ss_pred HHHHHHHH----H---HH---HHHCCCCCCEEEEECCCCCHHH-HHHHHCC--CCCCEEE---------------CCCCC
Q ss_conf 23300888----9---98---8631678848999535340889-9997122--2541220---------------15788
Q gi|254780947|r 756 EQHFGVKH----K---EA---LKETHTGVHVLTLSATPIPRTL-QLAITGV--RELSLIS---------------MPPIN 807 (1187)
Q Consensus 756 EqrFGV~~----K---e~---lk~~~~~vdvLtlsATPIPRTL-~msl~g~--rd~S~i~---------------tpP~~ 807 (1187)
=|-|.-+. - .. +.....+..++-|||||-|--. .+...+- .+.+.+. ..|.+
T Consensus 154 iH~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred EHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 00006762089999999999986336898089982799803578986323457643456544445678743334554345
Q ss_pred CCCEEEEEE-E------CCHH----HHHHHHHH-HHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 775379998-5------7978----98999998-9871885999826446928899999861654648886134674789
Q gi|254780947|r 808 RIACRTSIS-I------FDPL----VVRETLMR-EYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNL 875 (1187)
Q Consensus 808 R~~v~T~v~-~------~~~~----~i~~ai~r-El~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~l 875 (1187)
..++...+. + +... .+.+.+.+ ...+|+.+-.++|.+...+++...|++-.-..+++--||-++.++-
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r 313 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHH
T ss_conf 54446750112346630446799999999999999852671799955899999999999863364114554255618898
Q ss_pred HHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCC
Q ss_conf 999999963887579761020036332233266762502358860455322103
Q gi|254780947|r 876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVG 929 (1187)
Q Consensus 876 e~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVG 929 (1187)
|+ .++.+++|||+-+|-|||| ...-+|.. -+..|.|-|==||+|
T Consensus 314 ek------~~~~~~vVaTsaLElGIDi-~~d~~i~~---~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 314 ER------AMQFDILLGTSTVDVGVDF-KRDWLIFS---ARDAAAFWQRLGRLG 357 (357)
T ss_pred HC------CCCCCEEEECCCCEEEEEC-CCCEEEEC---CCCHHHHHHCCCCCC
T ss_conf 50------4899999987701035611-78989958---987888997266799
No 46
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=99.49 E-value=1.1e-11 Score=108.68 Aligned_cols=244 Identities=31% Similarity=0.421 Sum_probs=182.2
Q ss_pred CCCCHHH--HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEE--EE---CCCCCCHHHHHHHHHHCCC
Q ss_conf 5432489--999999875112754999824366555899999986067898335--41---0666302567777531225
Q gi|254780947|r 655 VGFGKTE--IALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIA--SI---SRFVQTKEAALHKKSITEG 727 (1187)
Q Consensus 655 VGfGKTE--VA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~--~l---sRf~~~~e~~~i~~~l~~G 727 (1187)
=|-|||= .|| |+|.|..-||.|=++.|||+||+|=|++..+=-..-++.+. .. ||+ +.++++++.+.+.+|
T Consensus 108 TGVGKttFG~~m-slflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS~L-~~~~kke~~Eri~~G 185 (1843)
T TIGR01054 108 TGVGKTTFGLVM-SLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHSKL-STKEKKEVKERIENG 185 (1843)
T ss_pred CCCCHHHHHHHH-HHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC-CHHHHHHHHHHHHCC
T ss_conf 887677999999-999865429878999470788999999987520025750000222101126-545678899987318
Q ss_pred CCEEEEECHHHHCCCCCCCCCC------EEEEEC----------------------H-----------------------
Q ss_conf 7608985206542785202365------699722----------------------2-----------------------
Q gi|254780947|r 728 QVDIVIGTHALLNPKITFANLG------LIIIDE----------------------E----------------------- 756 (1187)
Q Consensus 728 ~idiviGTH~ll~~~v~f~~Lg------LliiDE----------------------E----------------------- 756 (1187)
.-||||+|-.-|+|. |..|+ |++||- |
T Consensus 186 DfdilitT~~FL~K~--~~~L~~~y~F~liFVDDVDa~Lk~skNVD~~L~LlGF~eE~i~~a~~~i~L~~k~~k~~~~~~ 263 (1843)
T TIGR01054 186 DFDILITTSMFLSKN--FDKLKNQYKFDLIFVDDVDALLKASKNVDKILKLLGFSEELIEKAYELIKLKLKENKLEEDLA 263 (1843)
T ss_pred CEEEEHHHHHHHHHH--HHHCCCCCEEEEEEEECHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 917861224688876--651789851448997153676316555667775517889999999999999887643577888
Q ss_pred ---------HHHH---H-HHHHHH----HHCCCCCCEEEE-ECCCCCHHHHH--------------HHHCCCCCCEEECC
Q ss_conf ---------3300---8-889988----631678848999-53534088999--------------97122254122015
Q gi|254780947|r 757 ---------QHFG---V-KHKEAL----KETHTGVHVLTL-SATPIPRTLQL--------------AITGVRELSLISMP 804 (1187)
Q Consensus 757 ---------qrFG---V-~~Ke~l----k~~~~~vdvLtl-sATPIPRTL~m--------------sl~g~rd~S~i~tp 804 (1187)
||-- + +-++++ |+-|.--=||-. |||==||-=-. +-.|+|++
T Consensus 264 ~~~~~~R~E~~~~~LE~~~r~~~~~a~~~~krGr~g~LivsSATG~prG~r~~LFR~LL~FevG~~~~~GLRnv------ 337 (1843)
T TIGR01054 264 REKIVVRLEARKKLLEAKRRLEKLEAEIKKKRGRKGVLIVSSATGKPRGKRVKLFRELLGFEVGKGSDTGLRNV------ 337 (1843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCE------
T ss_conf 88886467888999999999898776474324886469998514888761336536552710057642233213------
Q ss_pred CCCCCCEEEEEEECC--HHHHHH--HHHHHHHHCCEEEEEEC-CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 788775379998579--789899--99989871885999826-4469288999998616546488861346747899999
Q gi|254780947|r 805 PINRIACRTSISIFD--PLVVRE--TLMREYYRGGQSFYVCP-RLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKM 879 (1187)
Q Consensus 805 P~~R~~v~T~v~~~~--~~~i~~--ai~rEl~RgGQvf~v~n-rv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m 879 (1187)
|-+|+.+.| .+.+.+ -+-++|.-||=||.=.. =++.-+++++.|++. +.++..-|-.-+++.+|
T Consensus 338 ------vD~y~~~~d~v~E~~~~sve~v~~LG~GGlVyvs~~yG~e~a~ei~~~L~~~--Gv~A~~~~~~k~~~~~~--- 406 (1843)
T TIGR01054 338 ------VDVYEEDEDGVKEKLLESVELVKKLGKGGLVYVSIDYGKEKAEEIKEFLREH--GVKAVAYHAKKPKEDLE--- 406 (1843)
T ss_pred ------EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC--CCEEEEEEECCCCCCHH---
T ss_conf ------8851148884468899999999984794399971222558999999999857--94799984037732034---
Q ss_pred HHHHCCCCCEEEECCCEE----CCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEE-ECCCCCCC
Q ss_conf 999638875797610200----3633223326676250235886045532210356767369999-66888889
Q gi|254780947|r 880 NAFYEGQYDVLLSTSIVE----SGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFL-LPENRPLT 948 (1187)
Q Consensus 880 ~~F~~~~~dvLv~TtIiE----sGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~-~~~~~~l~ 948 (1187)
+|.+||+||||=++=+- =|||.|. +-=||=|+ +|+.+.-+
T Consensus 407 -~F~~GE~dVliG~a~yyg~LVRGLDLP~----------------------------rvRYAvF~G~Pk~k~~~ 451 (1843)
T TIGR01054 407 -KFAEGEIDVLIGVASYYGVLVRGLDLPE----------------------------RVRYAVFLGVPKFKVPL 451 (1843)
T ss_pred -HHHCCCEEEEEEEECCCCCEEECCCCCC----------------------------HHEEEEECCCCCEEEEE
T ss_conf -6634851368771015476353266610----------------------------10002343899506641
No 47
>KOG0350 consensus
Probab=99.44 E-value=4.5e-10 Score=96.39 Aligned_cols=312 Identities=20% Similarity=0.273 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHCCCCC---CCCEEEECCCCCCHHHH---HHH-HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 448999999987605988---54144316654324899---999-99875112754999824366555899999986067
Q gi|254780947|r 628 EDQEKAIDAVIQDLSSGR---LMDRLICGDVGFGKTEI---ALR-AAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 628 ~DQ~~AI~eV~~Dmes~~---PMDRLiCGDVGfGKTEV---A~R-Aafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
|=|...+.-++.+..+|- |=|=+|----|-|||=- -+= +-|.--..--|+.|+|||--||-|-|.||..-..+
T Consensus 162 PVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~ 241 (620)
T KOG0350 162 PVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSG 241 (620)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHCCC
T ss_conf 05888888999861479998877547755789884566513789997038734057999954799999999999985668
Q ss_pred CCCCEEEECCCCCC-HHHHHHHHHHCCCCCEEEEECHHHH------CCCCCCCCCCEEEEECHHHHHHHHHHHH------
Q ss_conf 89833541066630-2567777531225760898520654------2785202365699722233008889988------
Q gi|254780947|r 701 FSVRIASISRFVQT-KEAALHKKSITEGQVDIVIGTHALL------NPKITFANLGLIIIDEEQHFGVKHKEAL------ 767 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~-~e~~~i~~~l~~G~idiviGTH~ll------~~~v~f~~LgLliiDEEqrFGV~~Ke~l------ 767 (1187)
-++.|..+|-=.+- .|+++....=..-.|||+|.|-.=| -|.+..++|-.|||||--|.+=.--+-+
T Consensus 242 tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~ 321 (620)
T KOG0350 242 TGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMS 321 (620)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHHCCCCCCCCHHHCEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 86598860145405789999725997654366973726888860489875644535777525778999999988999999
Q ss_pred --HHC---CCCCCEEEEECCCCCHHHHHHHHC-----------------------CC---------------CCCEEECC
Q ss_conf --631---678848999535340889999712-----------------------22---------------54122015
Q gi|254780947|r 768 --KET---HTGVHVLTLSATPIPRTLQLAITG-----------------------VR---------------ELSLISMP 804 (1187)
Q Consensus 768 --k~~---~~~vdvLtlsATPIPRTL~msl~g-----------------------~r---------------d~S~i~tp 804 (1187)
|.+ ...-+++-+.--|-|-+|.--+++ +. +.+...+|
T Consensus 322 ~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp 401 (620)
T KOG0350 322 LCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLP 401 (620)
T ss_pred HHCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHHHHCCHHHHHHHHCCCCCEEEEECCCCEEEECC
T ss_conf 83774010471544410146774005877741277675267653013330496887653327983588622543266157
Q ss_pred CCC-CCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCC--CCEEEEECCCCHHHHHHHHHH
Q ss_conf 788-77537999857978989999989871885999826446928899999861654--648886134674789999999
Q gi|254780947|r 805 PIN-RIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPE--LKIAMAHGQMSPKNLEDKMNA 881 (1187)
Q Consensus 805 P~~-R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~--~~i~vaHGqm~~~~le~~m~~ 881 (1187)
|.= -++|-|-.. +-+..+-.-| +...+-|...-.|-+++-.+.+.-|+-.+-. .++.---||++.+.--+...+
T Consensus 402 ~~l~~~~vv~~~~-~kpl~~~~lI--~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~ 478 (620)
T KOG0350 402 SSLSHRLVVTEPK-FKPLAVYALI--TSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEK 478 (620)
T ss_pred HHHHHCEEECCCC-CCHHHHHHHH--HHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5542133420235-5437699999--774010489995246889999999999862644025565234438899999998
Q ss_pred HHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCC
Q ss_conf 96388757976102003633223326676250235886045532-2103567673699996688
Q gi|254780947|r 882 FYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 882 F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~ 944 (1187)
|..|++.||||+-+.--|||+.++.-.|=++.-++ ++.|=-| ||-+|-++.+|||=+....
T Consensus 479 f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~--~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350 479 FAKGDINVLICSDALARGIDVNDVDNVINYDPPAS--DKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred HHCCCCEEEEEHHHHHCCCCCCCCCEEEECCCCCH--HHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 75389529985236554776024604763589812--657877602210056774478963155
No 48
>KOG0952 consensus
Probab=99.41 E-value=2.6e-10 Score=98.26 Aligned_cols=310 Identities=19% Similarity=0.289 Sum_probs=209.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHC----------CCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH
Q ss_conf 41443166543248999999987511----------27549998243665558999999860678983354106663025
Q gi|254780947|r 647 MDRLICGDVGFGKTEIALRAAFIAVM----------NGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716 (1187)
Q Consensus 647 MDRLiCGDVGfGKTEVA~RAafkav~----------~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e 716 (1187)
-+-|||---|=|||-|||=+...+.. ++..+..++|+--||+--+..|..||+.|+++|..|.-=.....
T Consensus 127 eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~ 206 (1230)
T KOG0952 127 ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTK 206 (1230)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 87799777899716789999999998501455434687139999256889999999986642424625888417545667
Q ss_pred HHHHHHHHCCCCCEEEEECH-------HHHCCC-CCCCCCCEEEEECHHHHH-----HHHH--HHHH----HCCCCCCEE
Q ss_conf 67777531225760898520-------654278-520236569972223300-----8889--9886----316788489
Q gi|254780947|r 717 AALHKKSITEGQVDIVIGTH-------ALLNPK-ITFANLGLIIIDEEQHFG-----VKHK--EALK----ETHTGVHVL 777 (1187)
Q Consensus 717 ~~~i~~~l~~G~idiviGTH-------~ll~~~-v~f~~LgLliiDEEqrFG-----V~~K--e~lk----~~~~~vdvL 777 (1187)
.+ |. ..||+|-|- |==+.| .=|...+||||||=|=-- |--- -+.+ ....+|-++
T Consensus 207 te-i~------~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRiv 279 (1230)
T KOG0952 207 TE-IA------DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIV 279 (1230)
T ss_pred HH-HH------HCCEEEECCCCEEEEEEEECCCHHHHHHEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 78-77------437797063400046654126265555420488530012157664069999999999988542005788
Q ss_pred EEECCCCCHHHHHHH-------HCCCCCCEEECCCCCCCCEEEEEEE--CC---------HHHHHHHHHHHHHHCCEEE-
Q ss_conf 995353408899997-------1222541220157887753799985--79---------7898999998987188599-
Q gi|254780947|r 778 TLSATPIPRTLQLAI-------TGVRELSLISMPPINRIACRTSISI--FD---------PLVVRETLMREYYRGGQSF- 838 (1187)
Q Consensus 778 tlsATPIPRTL~msl-------~g~rd~S~i~tpP~~R~~v~T~v~~--~~---------~~~i~~ai~rEl~RgGQvf- 838 (1187)
.|||| +|--+-.|. .|+--+..---| .|....+.- .. ++.--+++..=+.+|-||+
T Consensus 280 gLSAT-lPN~eDvA~fL~vn~~~glfsFd~~yRP----vpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlv 354 (1230)
T KOG0952 280 GLSAT-LPNYEDVARFLRVNPYAGLFSFDQRYRP----VPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLV 354 (1230)
T ss_pred EEECC-CCCHHHHHHHHCCCCCCCEEEECCCCCC----CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 86245-7877999998667875662652023203----431116874212442002466777899999999974985999
Q ss_pred EEECCCCCHHHHHHH---------------------HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEE
Q ss_conf 982644692889999---------------------98616546488861346747899999999638875797610200
Q gi|254780947|r 839 YVCPRLSDLEKCYTF---------------------LQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVE 897 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~---------------------l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiE 897 (1187)
|||-|=++|...... |++|++. -+++-|.-|.-.+---+=--|.+|-+.||+||.---
T Consensus 355 FvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~-g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLA 433 (1230)
T KOG0952 355 FVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQ-GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLA 433 (1230)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 9965748999999999998862865656788366789999874-010202564314689999998559822899612133
Q ss_pred CCCCCCCCCEEE----EECHHH-----CCCCHHHHHHHHCCCC--CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 363322332667----625023-----5886045532210356--76736999966888889889999999997255652
Q gi|254780947|r 898 SGLDLPKANTMI----VQRADM-----FGLAQLYQLRGRVGRS--KIASFALFLLPENRPLTAAAQKRLRILQSLNTLGA 966 (1187)
Q Consensus 898 sGlDip~aNTii----i~~ad~-----~GLaqlyQlrGRVGRs--~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGs 966 (1187)
-|...|----|| +.+|.+ +|....-|+=||-||- +..+-+++++..++. ..=+.-|..-..+-|
T Consensus 434 wGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl-----~~Y~sLl~~~~piES 508 (1230)
T KOG0952 434 WGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL-----DHYESLLTGQNPIES 508 (1230)
T ss_pred ECCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHH-----HHHHHHHCCCCHHHH
T ss_conf 125776418986487411356684354028888998720689987777628999665079-----899999708970577
Q ss_pred HHHHHHHH
Q ss_conf 48999999
Q gi|254780947|r 967 GFQLASYD 974 (1187)
Q Consensus 967 Gf~iA~~D 974 (1187)
-|-.-..|
T Consensus 509 ~~~~~L~d 516 (1230)
T KOG0952 509 QLLPCLID 516 (1230)
T ss_pred HHHHHHHH
T ss_conf 78899987
No 49
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.40 E-value=8.6e-09 Score=86.50 Aligned_cols=325 Identities=18% Similarity=0.162 Sum_probs=235.3
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEE--EEEECHHHHH
Q ss_conf 78467898998488888744899999998760598854144316654324899999998751127549--9982436655
Q gi|254780947|r 610 VSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQV--AVIAPTTLLV 687 (1187)
Q Consensus 610 ~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQv--avlvPTTiLa 687 (1187)
.+...-..|.+.=+...=.-|..|.+-+.+. +|=+|+---|.||||--|=+.|-..+-+.+- .+|=||-=||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G------~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREG------RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALA 128 (851)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf 0037889999743442007799999999779------9889978998854589899999998308665089980437767
Q ss_pred HHHHHHHHHHHCCCC--CCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC----HH-HHCC----CCCCCCCCEEEEECH
Q ss_conf 589999998606789--833541066630256777753122576089852----06-5427----852023656997222
Q gi|254780947|r 688 RQHFRLFSERFQGFS--VRIASISRFVQTKEAALHKKSITEGQVDIVIGT----HA-LLNP----KITFANLGLIIIDEE 756 (1187)
Q Consensus 688 ~QH~~tf~~Rf~~~p--v~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT----H~-ll~~----~v~f~~LgLliiDEE 756 (1187)
+--.+-|.+=-+++| |++....-=..+.+.+ .+-.+.-|||+-| |- ||-. -.-|++|-.||+||=
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDEl 204 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDEL 204 (851)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH----HHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHCCCEEEEECC
T ss_conf 669999999998478751354434889678889----9873899789838899989863688227888732758998444
Q ss_pred HHH----HHH-------HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCE-EECCCCCCCCEEEEEEEC------
Q ss_conf 330----088-------89988631678848999535340889999712225412-201578877537999857------
Q gi|254780947|r 757 QHF----GVK-------HKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSL-ISMPPINRIACRTSISIF------ 818 (1187)
Q Consensus 757 qrF----GV~-------~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~-i~tpP~~R~~v~T~v~~~------ 818 (1187)
|=+ |-. =|..++..-.+--++..|||===.-=++.-..-++.-+ +.....-|-++...+-.-
T Consensus 205 HtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 205 HTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELA 284 (851)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEECCCCHHHH
T ss_conf 12156037889999999999972458996289983124682889998628721463147888878748998568511332
Q ss_pred -----CHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH-HH-HHHCCC-----CCEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf -----9789899999898718859998264469288999-99-861654-----64888613467478999999996388
Q gi|254780947|r 819 -----DPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYT-FL-QSEVPE-----LKIAMAHGQMSPKNLEDKMNAFYEGQ 886 (1187)
Q Consensus 819 -----~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~-~l-~~l~p~-----~~i~vaHGqm~~~~le~~m~~F~~~~ 886 (1187)
+...--+-+..-+-++|....++-|....-+... .. +.++-. .+|..-||=|...+-.++-.+|-+|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 21123457799999999987696599998357567887541578875406010331342336699999999999974688
Q ss_pred CCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 7579761020036332233266762502358860455322103567673699996688
Q gi|254780947|r 887 YDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 887 ~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
..++++|.=-|.|+||-..-..|...==--+.+.+.|-.||.||..+.+..+..+.++
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred CCEEEECHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 4178612101226567021145304889702888988611035887875379983788
No 50
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.38 E-value=9.4e-09 Score=86.17 Aligned_cols=416 Identities=18% Similarity=0.197 Sum_probs=261.6
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHCCCCEEEEEECHHHHHHHHHHHH-HHHHCCCCCCEEEECCCC
Q ss_conf 99987605988541443166543248999999987-5112754999824366555899999-986067898335410666
Q gi|254780947|r 635 DAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFI-AVMNGLQVAVIAPTTLLVRQHFRLF-SERFQGFSVRIASISRFV 712 (1187)
Q Consensus 635 ~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafk-av~~gkQvavlvPTTiLa~QH~~tf-~~Rf~~~pv~i~~lsRf~ 712 (1187)
+++++-++...- =+|||+-|-|||-.-=-+-.. ...+| .++++-|--|-|.--.+-- .+|=+..+-.|+.-=||-
T Consensus 11 ~~i~~~l~~~~~--~vl~a~tGsGKtTqvP~~ll~~~~~~g-~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e 87 (812)
T PRK11664 11 PELLTALKTAPQ--VLLKAPTGAGKSTWLPLQLLQQGGING-KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHHCCE--EEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 999999997997--999908999989999999996468899-38993883999999999999972999998675782567
Q ss_pred CCHHHHHHHHHHCCCCCEEEEECHH----HHCCCCCCCCCCEEEEECHHHHHHHH-------HHHHHHCCCCCCEEEEEC
Q ss_conf 3025677775312257608985206----54278520236569972223300888-------998863167884899953
Q gi|254780947|r 713 QTKEAALHKKSITEGQVDIVIGTHA----LLNPKITFANLGLIIIDEEQHFGVKH-------KEALKETHTGVHVLTLSA 781 (1187)
Q Consensus 713 ~~~e~~~i~~~l~~G~idiviGTH~----ll~~~v~f~~LgLliiDEEqrFGV~~-------Ke~lk~~~~~vdvLtlsA 781 (1187)
+..- ...-|.+-|-- .|+.|-...+.+.||+||=|-=.+.- ++..+.+|.+.-++-|||
T Consensus 88 ~~~s----------~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSA 157 (812)
T PRK11664 88 SKVG----------PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred CCCC----------CCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7889----------985799975589999972497767788899957546875189999999999986189828999847
Q ss_pred CCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECC-----HHHHHHHHHHHHH-HCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 53408899997122254122015788775379998579-----7898999998987-18859998264469288999998
Q gi|254780947|r 782 TPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFD-----PLVVRETLMREYY-RGGQSFYVCPRLSDLEKCYTFLQ 855 (1187)
Q Consensus 782 TPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~-----~~~i~~ai~rEl~-RgGQvf~v~nrv~~i~~~~~~l~ 855 (1187)
|.=.-.+.--|. +-.+|.. |-..+||.++-.+.. +..+..+|.+-+. ..|-|-.--+-+..|..+++.|+
T Consensus 158 Tld~~~~~~~~~---~~~~i~~-~gr~fpV~~~y~~~~~~~~~~~~~~~~i~~~~~~~~G~iLvFLPG~~EI~~~~~~L~ 233 (812)
T PRK11664 158 TLDNDRLQQLLP---DAPYIES-EGRSFPVERRYQPLPAHQRFDEAVAVATAELLRQESGSLLLFLPGVGEIQRVQEQLA 233 (812)
T ss_pred CCCHHHHHHHCC---CCCEEEE-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 888488997589---9988987-874331157854688520699999999999973589988997699899999999986
Q ss_pred HHCC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECH--------HHCCCC-------
Q ss_conf 6165-464888613467478999999996388757976102003633223326676250--------235886-------
Q gi|254780947|r 856 SEVP-ELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA--------DMFGLA------- 919 (1187)
Q Consensus 856 ~l~p-~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~a--------d~~GLa------- 919 (1187)
+.++ +..|-..||+|+..+=.+++..--.|.--|.++|.|-||.|.||++... ||-. -.-|++
T Consensus 234 ~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~V-IDsG~~r~~~~d~~~g~~~L~~~~i 312 (812)
T PRK11664 234 SRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLV-VDSGLERVARFDPKTGLTRLETQRI 312 (812)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEE-EECHHHHHHEECCCCCCCEEEEEEC
T ss_conf 335578089964478998898776067999953799950200020201781489-7402234432343579756767704
Q ss_pred ---HHHHHHHHCCCCCCCCEEEEEECCC-------CCCCHHHHHHHHH-HHHHCCCC---------------HHHHHHHH
Q ss_conf ---0455322103567673699996688-------8889889999999-99725565---------------24899999
Q gi|254780947|r 920 ---QLYQLRGRVGRSKIASFALFLLPEN-------RPLTAAAQKRLRI-LQSLNTLG---------------AGFQLASY 973 (1187)
Q Consensus 920 ---qlyQlrGRVGRs~~~ayayl~~~~~-------~~l~~~a~kRL~a-i~~~~~lG---------------sGf~iA~~ 973 (1187)
+--|=+||-||- .-+.||=+|... ....|.-+--|.. +-+.-.+| +.+.-|+.
T Consensus 313 Skasa~QRaGRAGR~-~pG~cyRL~s~~~~~~~~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~a~~~A~~ 391 (812)
T PRK11664 313 SQASMTQRAGRAGRL-EPGICLHLYAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQLSWLDQPPAVNLAAAKR 391 (812)
T ss_pred CHHHHHCCCCCCCCC-CCCEEEEEECHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHH
T ss_conf 544353136767888-9970787335988852746998055527689999999965999877687999979899999999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHH--------HHHHHHHHH-------------HHHCCCCCCCCCCCCEEECCCCC
Q ss_conf 985116300046111553898338999--------999999999-------------98288876766665256548851
Q gi|254780947|r 974 DLDIRGTGNLLGEEQSGHIREIGFELY--------QKMLEETVA-------------SIKGQKDLVESDWSPQVLIEASV 1032 (1187)
Q Consensus 974 DleiRGaG~llG~~QsG~i~~vG~~ly--------~~ml~~av~-------------~~kg~~~~~~~~~~~~i~~~~~~ 1032 (1187)
-|.-=||=+ ..|.+...|..|- -+||=.|-. .+-.+..
T Consensus 392 ~L~~LgAld-----~~g~lT~~G~~ma~lP~~Prla~mll~a~~~~~~~~~~a~~~aall~e~~---------------- 450 (812)
T PRK11664 392 LLQMLGALD-----GEGQLTARGRKMAALGNDPRLAAMLVSAKEDDEAALATAAKLAAILEEPP---------------- 450 (812)
T ss_pred HHHHCCCCC-----CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC----------------
T ss_conf 999777876-----66854689999972779947999999745328246889999999705856----------------
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHCCC
Q ss_conf 167343899888999999875089989999999997762488988-99999999999999998697
Q gi|254780947|r 1033 MIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPI-EVIHLLKVVFLKLLCRIANI 1097 (1187)
Q Consensus 1033 ~ip~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~~P~-~~~~l~~~~~lk~~~~~~~i 1097 (1187)
...-.|...++.- . ..........+..-+..+-|.... .+-.|+..+.--..|++-|-
T Consensus 451 ---~~~~~dl~~~l~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~~~g~lla~AfPDRIArrRg~ 509 (812)
T PRK11664 451 ---RSGNSDLSVALSR---N-QPGWQQRAQQLLKRLNVRGGEVDSSLIAPLLALAFPDRIARRRGQ 509 (812)
T ss_pred ---CCCCCCHHHHHHH---H-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHCC
T ss_conf ---6887479999865---3-434568999999986540489986789999999785999886189
No 51
>KOG0345 consensus
Probab=99.38 E-value=1.1e-08 Score=85.78 Aligned_cols=315 Identities=21% Similarity=0.270 Sum_probs=215.7
Q ss_pred HHHHH-HHHHH-CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH------CCCCEE--EEEE
Q ss_conf 46789-89984-88888744899999998760598854144316654324899999998751------127549--9982
Q gi|254780947|r 612 QDLYS-QFIKR-FPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV------MNGLQV--AVIA 681 (1187)
Q Consensus 612 ~~~~~-eFe~~-FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav------~~gkQv--avlv 681 (1187)
.+|.. .++.+ |++ =||=|..||-...+- -|=.+--=-|-|||=-=+=-.+-.+ ....|| .|+.
T Consensus 14 ~~~l~~~l~~~GF~~-mTpVQa~tIPlll~~------KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIs 86 (567)
T KOG0345 14 SPWLLEALDESGFEK-MTPVQAATIPLLLKN------KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIIS 86 (567)
T ss_pred CHHHHHHHHHCCCCC-CCHHHHHHHHHHHCC------CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 689999998628863-687787466788527------8568985678871066899999999861157896512479965
Q ss_pred CHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-H---HCC---CCCCCCCCEEEE
Q ss_conf 4366555899999986067-8983354106663025677775312257608985206-5---427---852023656997
Q gi|254780947|r 682 PTTLLVRQHFRLFSERFQG-FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-L---LNP---KITFANLGLIII 753 (1187)
Q Consensus 682 PTTiLa~QH~~tf~~Rf~~-~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-l---l~~---~v~f~~LgLlii 753 (1187)
||-=||.|-++.-..=.+. ++++.+++ .......+-++.+++-...|+|||-- | ++. ++.|++|-+||+
T Consensus 87 PTRELa~QI~~V~~~F~~~l~~l~~~l~---vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345 87 PTRELARQIREVAQPFLEHLPNLNCELL---VGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEE---ECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCHHHCCCCCCCCEEEE
T ss_conf 7199999999999999985036545999---7686477799999970995899476249999845300036133115775
Q ss_pred ECHHHH---HHHHH-HHH-----HHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEE---CC---CCCCCCEEEEEEEC
Q ss_conf 222330---08889-988-----63167884899953534088999971222541220---15---78877537999857
Q gi|254780947|r 754 DEEQHF---GVKHK-EAL-----KETHTGVHVLTLSATPIPRTLQLAITGVRELSLIS---MP---PINRIACRTSISIF 818 (1187)
Q Consensus 754 DEEqrF---GV~~K-e~l-----k~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~---tp---P~~R~~v~T~v~~~ 818 (1187)
||--|+ |-... +.| |+-|++. -|||-----=.++-.|+|+---+. +- -+-++...-.|.+-
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGL----FSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a 239 (567)
T KOG0345 164 DEADRLLDMGFEASVNTILSFLPKQRRTGL----FSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA 239 (567)
T ss_pred CCHHHHHCCCHHHHHHHHHHHCCCCCCCCC----CEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHEEEEECH
T ss_conf 146767443279999999986621000244----3002146688999853568636541234455584231112567577
Q ss_pred CHHHHHHHHHHHHHHC---CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9789899999898718---8599982644692889999986165464888613467478999999996388757976102
Q gi|254780947|r 819 DPLVVRETLMREYYRG---GQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSI 895 (1187)
Q Consensus 819 ~~~~i~~ai~rEl~Rg---GQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtI 895 (1187)
++... ..-++-++ +-+..-.+--.+.+-+...+..+++...|--.||+|+.++=.++...|.+-.--||.||-+
T Consensus 240 ~eK~~---~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDV 316 (567)
T KOG0345 240 DEKLS---QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDV 316 (567)
T ss_pred HHHHH---HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 88899---999999624546279993475409999988887607874798622012346889999987156861886045
Q ss_pred EECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 0036332233266762502358860455322103567673699996688
Q gi|254780947|r 896 VESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 896 iEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
---|||||+..-.|=.|.-.=-=+=. .=-||-||-++++-|-.+..+.
T Consensus 317 aARGlDip~iD~VvQ~DpP~~~~~Fv-HR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345 317 AARGLDIPGIDLVVQFDPPKDPSSFV-HRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred HHCCCCCCCCEEEEECCCCCCHHHHH-HHCCHHHHCCCCCCEEEEECCC
T ss_conf 55368988970799707999814777-7412144356766348997661
No 52
>PRK09694 hypothetical protein; Provisional
Probab=99.38 E-value=1.1e-09 Score=93.41 Aligned_cols=341 Identities=21% Similarity=0.271 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 348999999999999999999999998874015677878467898998488--888744899999998760598854144
Q gi|254780947|r 573 SAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFP--HVETEDQEKAIDAVIQDLSSGRLMDRL 650 (1187)
Q Consensus 573 ~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~Fp--yeET~DQ~~AI~eV~~Dmes~~PMDRL 650 (1187)
.-|+.+..+|.+++...- +.. ....|. .-| +-|| |..||=|.. ++ +|. ..|-==+
T Consensus 251 ~y~~~~~~~A~~al~~~g-----l~~-----~~~~~~------~~~-~~l~~~~~PrplQ~~-~~----~l~-~~PgL~I 307 (878)
T PRK09694 251 QYFQDRQQDASRVLELSG-----LVS-----NKRSYG------GVH-ALLDNGYQPRQLQTL-VD----ALP-LAPGLTV 307 (878)
T ss_pred HHHHHHHHHHHHHHHHCC-----CCC-----CCCCCC------CCH-HHCCCCCCCCHHHHH-HH----HCC-CCCCEEE
T ss_conf 999999999999999638-----876-----655765------413-331789999679999-98----456-7998799
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHH----HCCCCCCEEEE---CCC----CCCH--
Q ss_conf 316654324899999998751127--54999824366555899999986----06789833541---066----6302--
Q gi|254780947|r 651 ICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSER----FQGFSVRIASI---SRF----VQTK-- 715 (1187)
Q Consensus 651 iCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~R----f~~~pv~i~~l---sRf----~~~~-- 715 (1187)
|=-.-|-||||-|+.+|..-...| .-+-+.-||.-=|.+-|.-..+- |.+ | ++.++ +++ ....
T Consensus 308 iEAptG~GKTEAAL~~A~~L~~~~~~~Gl~faLPT~ATaNaMf~Rv~~~~~~~~~~-~-~v~LaHg~a~l~~~~~~l~~~ 385 (878)
T PRK09694 308 IEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEAAASKLFPS-P-NLILAHGNSRFNHLFQSIKSR 385 (878)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCC-C-CEEEECCHHHHHHHHHHHCCC
T ss_conf 97589997589999999999973489836997747988999999999999973689-9-769744736550566651013
Q ss_pred -------HHHHH--HHHH----CCC-CCEEEEEC--HHHHC-CCCCCCCC-------CEEEEECHHHHHHHHHHHHHHC-
Q ss_conf -------56777--7531----225-76089852--06542-78520236-------5699722233008889988631-
Q gi|254780947|r 716 -------EAALH--KKSI----TEG-QVDIVIGT--HALLN-PKITFANL-------GLIIIDEEQHFGVKHKEALKET- 770 (1187)
Q Consensus 716 -------e~~~i--~~~l----~~G-~idiviGT--H~ll~-~~v~f~~L-------gLliiDEEqrFGV~~Ke~lk~~- 770 (1187)
+...+ -+=+ |.+ --++.||| +.|+. =.+++..| ..|||||=|=+-+-.-.-|..+
T Consensus 386 ~~~~~~~~~~~~~~~~W~~~~~Kr~LLap~~VGTiDQaLla~L~~kH~~LR~~gLa~kvvIiDEVHAYD~Ym~~lL~~lL 465 (878)
T PRK09694 386 AITEQGQEEAWVQCCQWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDAYMNGLLEAVL 465 (878)
T ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67654454301577766411102231377154679999998746148999999862874897253334588999999999
Q ss_pred ----CCCCCEEEEECCCCCHHHHHHHHC-------------------------CCCCCEEECCCCCCCCEEEEEEECC--
Q ss_conf ----678848999535340889999712-------------------------2254122015788775379998579--
Q gi|254780947|r 771 ----HTGVHVLTLSATPIPRTLQLAITG-------------------------VRELSLISMPPINRIACRTSISIFD-- 819 (1187)
Q Consensus 771 ----~~~vdvLtlsATPIPRTL~msl~g-------------------------~rd~S~i~tpP~~R~~v~T~v~~~~-- 819 (1187)
..++.|+-|||| .|..+--.|.. ....++...+...|..|..-....+
T Consensus 466 ~wl~~~g~~viLLSAT-LP~~~R~~L~~ay~~~~~~~~~~~~YP~it~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 544 (878)
T PRK09694 466 KAQAQVGGSVILLSAT-LPMTQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHQLPPRFSIQPEPICLADM 544 (878)
T ss_pred HHHHHCCCCEEEEECC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 9999839988999278-989999999997556887666677886136315566675344655567772378887631444
Q ss_pred --HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHC-CCCCEEEEECCCCHH---HHHHHHHHHHCCC-----CC
Q ss_conf --789899999898718859998264469288999998616-546488861346747---8999999996388-----75
Q gi|254780947|r 820 --PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEV-PELKIAMAHGQMSPK---NLEDKMNAFYEGQ-----YD 888 (1187)
Q Consensus 820 --~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~-p~~~i~vaHGqm~~~---~le~~m~~F~~~~-----~d 888 (1187)
+..+.+.+.+++.-||.|-+|+|.|..-.++...|+++. ++..|..-|++.... ++|+-++.-+... .-
T Consensus 545 ~~~~~~~~~l~~~~~~G~~v~vI~NTV~rAq~~y~~L~~~~~~~~~v~L~HsRF~~~DR~~~E~~vl~~~Gk~~~r~~g~ 624 (878)
T PRK09694 545 LPDLTMLERMIAAANAGAQVCVICNLVDDAQVCYQRLKELNNTQVDIDLFHARFTFNDRREKENRVISNFGKNGKRNVGR 624 (878)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 76489999999999789959999388999999999999852899877998688877669999999999868898899986
Q ss_pred EEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCC--------CCEEEEEECC
Q ss_conf 797610200363322332667625023588604553221035676--------7369999668
Q gi|254780947|r 889 VLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKI--------ASFALFLLPE 943 (1187)
Q Consensus 889 vLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~--------~ayayl~~~~ 943 (1187)
|||+|-+||--|||- +..||-+=|= .--|-|=-||+=|-.| .--||.+.|.
T Consensus 625 IlVaTQVvEQSLDiD-fD~liTDLAP---iDlLlQR~GRLhRH~R~~RP~g~~~P~~~Vl~P~ 683 (878)
T PRK09694 625 ILVATQVVEQSLDLD-FDWLITQHCP---ADLLFQRMGRLHRHHRKYRPAGFEIPVATILLPD 683 (878)
T ss_pred EEEECCEEEEEECCC-CCHHHCCCCC---HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
T ss_conf 999773332430335-3301104686---9999987423205899888877778769997888
No 53
>KOG0330 consensus
Probab=99.35 E-value=5.1e-09 Score=88.24 Aligned_cols=355 Identities=20% Similarity=0.235 Sum_probs=240.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 43403489999999999999999999999988740156778784678989984888887448999999987605988541
Q gi|254780947|r 569 KLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMD 648 (1187)
Q Consensus 569 kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMD 648 (1187)
+|-|..|++.+++--+.+..-|..==+..+.-+...---.......-+.....=--..|+=|..||--++.- =|
T Consensus 27 ~las~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g------~d 100 (476)
T KOG0330 27 SLASEGWKKNEESGDKFILSAANRNEEMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGG------RD 100 (476)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCHHHCC------CC
T ss_conf 543123331022045013335430201110221023220376899999999847678744445206554379------85
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-----HCC---CCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 4431665432489999999875-----112---75499982436655589999998606789833541066630256777
Q gi|254780947|r 649 RLICGDVGFGKTEIALRAAFIA-----VMN---GLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH 720 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~RAafka-----v~~---gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i 720 (1187)
=+.--.-|-||| +||.- -.. -.-+.||+||-=||+|--+.|-.==++.++++.+|--=-....|..-
T Consensus 101 vIglAeTGSGKT-----~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~ 175 (476)
T KOG0330 101 VIGLAETGSGKT-----GAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ 175 (476)
T ss_pred EEEEECCCCCCH-----HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 799943588840-----231799999997198774489964828999999999987535667279998658329999887
Q ss_pred HHHHCCCCCEEEEECHHHH------CCCCCCCCCCEEEEECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 7531225760898520654------2785202365699722233-----0088899886316788489995353408899
Q gi|254780947|r 721 KKSITEGQVDIVIGTHALL------NPKITFANLGLIIIDEEQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQ 789 (1187)
Q Consensus 721 ~~~l~~G~idiviGTH~ll------~~~v~f~~LgLliiDEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~ 789 (1187)
+ .-+.+|+|+|---| .|....+.|--||.||--| |++.----||.+...--.+--|||=---+=.
T Consensus 176 L----~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~k 251 (476)
T KOG0330 176 L----SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRK 251 (476)
T ss_pred H----HCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHH
T ss_conf 6----248987983707899998743684088757876331776621156899999987467441489998644413677
Q ss_pred HHHHCCCCCCEEECCCCCCC---CEEEEEE---ECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 99712225412201578877---5379998---57978989999989871885999826446928899999861654648
Q gi|254780947|r 790 LAITGVRELSLISMPPINRI---ACRTSIS---IFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKI 863 (1187)
Q Consensus 790 msl~g~rd~S~i~tpP~~R~---~v~T~v~---~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i 863 (1187)
+.-.-+++.--|++|-.-+. -.|||.- .|-+.-+-. |..|+. |+-+-.-+|-..+-..++-.|+.+= ..-
T Consensus 252 L~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~-ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg--~~a 327 (476)
T KOG0330 252 LQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVY-LLNELA-GNSVIVFCNTCNTTRFLALLLRNLG--FQA 327 (476)
T ss_pred HHHHCCCCCEEEECCCHHCCHHHHHHHEEECCCCCCCHHHHH-HHHHHC-CCCEEEEEECCCHHHHHHHHHHHCC--CCE
T ss_conf 876415897178604301116776645576326666523899-887635-9847999834640899999998627--643
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEEC
Q ss_conf 88613467478999999996388757976102003633223326676250235886045532-21035676736999966
Q gi|254780947|r 864 AMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLP 942 (1187)
Q Consensus 864 ~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~ 942 (1187)
--.||||+...=.-.|..|-+|..||||||-+---|||||.+.-.|=.| -=-=|+=|=-| ||+||-++.+-+-=++.
T Consensus 328 ~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyD--iP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330 328 IPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYD--IPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred ECCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCEEEEECC--CCCCHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 2056603577887789987514776798613010468987710799537--89837888887043001677751489874
Q ss_pred CC
Q ss_conf 88
Q gi|254780947|r 943 EN 944 (1187)
Q Consensus 943 ~~ 944 (1187)
..
T Consensus 406 qy 407 (476)
T KOG0330 406 QY 407 (476)
T ss_pred HH
T ss_conf 45
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=99.35 E-value=9.9e-10 Score=93.71 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCC----CEEEECCCCCCCCHHCCCCCHHHHHHHHHH
Q ss_conf 03765227999999-9862998999929989999999999985799----809985722467010048998999999999
Q gi|254780947|r 21 SPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPD----IRVIIFPAWDCLPYDRVSPSPYVVTRRLSC 95 (1187)
Q Consensus 21 ~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~----~~V~~FP~~E~LPYd~~sp~~di~~eRl~~ 95 (1187)
+|+.-+...+++|. +++.++..++|.|+..-+.|.++-|..|... .++++| ...-+ ..++=++
T Consensus 102 TG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~y--------~~~~~----~~~kee~ 169 (1176)
T PRK09401 102 TGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKVRLLYY--------HSSLK----KKEKEEF 169 (1176)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE--------ECCCC----HHHHHHH
T ss_conf 99888899999999998659839999688899999999999999970998408998--------56776----6678999
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHCC
Q ss_conf 99984124468876999566785236
Q gi|254780947|r 96 ISNLVSFNSSKETIIVLTTVSAVMCR 121 (1187)
Q Consensus 96 L~~L~~~~~~~~~~IIVtt~~ALlqk 121 (1187)
+.++. ++.-.|+|||..=|..+
T Consensus 170 ~~~~~----~gdfdIlitT~~fl~kn 191 (1176)
T PRK09401 170 LERLE----EGDFDILVTTSQFLSKN 191 (1176)
T ss_pred HHHHH----CCCCCEEEEEHHHHHHH
T ss_conf 98865----59986899856767654
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.34 E-value=5.9e-09 Score=87.73 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=44.8
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCE------EEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECH
Q ss_conf 99992998999999999998579980------998572246701004899899999999999984124468876999566
Q gi|254780947|r 42 LVYICSDERILINLKKILTLVVPDIR------VIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTV 115 (1187)
Q Consensus 42 ilvI~~d~~~A~~l~~dL~~f~~~~~------V~~FP~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~ 115 (1187)
+|||+|-+.-+.++...|..-+.... =...|.+.+--.....|. ++|-+.+ .+.|.|+|||+
T Consensus 40 VLYISPLKALa~Dv~rNL~~PL~gI~~~~~~~g~~~~~i~V~vRtGDT~~----~eR~r~~--------r~PPdILITTP 107 (1490)
T PRK09751 40 ILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPA----QERSKLT--------RNPPDILITTP 107 (1490)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH----HHHHHHH--------HCCCCEEEECH
T ss_conf 99959278889999999987998889999862567899758637999999----9999985--------08998398488
Q ss_pred HHHHCCCCCH
Q ss_conf 7852369986
Q gi|254780947|r 116 SAVMCRSVNI 125 (1187)
Q Consensus 116 ~ALlqklpp~ 125 (1187)
++|.--+.++
T Consensus 108 ESL~LlLtsk 117 (1490)
T PRK09751 108 ESLYLMLTSR 117 (1490)
T ss_pred HHHHHHHHHH
T ss_conf 9999987356
No 56
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.24 E-value=4.7e-08 Score=80.82 Aligned_cols=218 Identities=20% Similarity=0.207 Sum_probs=119.5
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCEEEECCCEECCCCCCCCCEEEE
Q ss_conf 188599982644692889999986165464888613467478999999996388--757976102003633223326676
Q gi|254780947|r 833 RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQ--YDVLLSTSIVESGLDLPKANTMIV 910 (1187)
Q Consensus 833 RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~--~dvLv~TtIiEsGlDip~aNTiii 910 (1187)
|+-.|-..+-...+....++.|+.. ...++++-||.|+..+-++....|-+.+ ..|||||-+-.-|++..-|+.||-
T Consensus 492 ~~eKvLVFte~~~Ta~~L~~~Lr~~-~Gi~~avfh~gms~~ERdraaa~Fa~~e~gaqVLI~TEagsEG~NLQF~~~LVn 570 (955)
T PRK04914 492 RSEKVLVICAKAETALQLEQALRER-EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL 570 (955)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHEE
T ss_conf 7985899968389999999999875-599569970999989999999986176778519997252124503777435235
Q ss_pred ECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHH-----HHHHHCC-CCHHHHHHHHHHHHCCCCCCC
Q ss_conf 2502358860455322103567673699996688888988999999-----9997255-652489999998511630004
Q gi|254780947|r 911 QRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR-----ILQSLNT-LGAGFQLASYDLDIRGTGNLL 984 (1187)
Q Consensus 911 ~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~-----ai~~~~~-lGsGf~iA~~DleiRGaG~ll 984 (1187)
.|= =.---.|-|==|||-|=+.+-=-..-+|= +...|+.||- .+..|+. ..+|..+..+ ..-+=. ++|
T Consensus 571 yDL-PWNP~rLEQRIGRlDRiGQ~~dV~Ihvpy---~~~s~q~~l~~wy~~gl~af~~~~~~g~~v~~~-~~~~l~-~~l 644 (955)
T PRK04914 571 FDL-PFNPDLLEQRIGRLDRIGQKHDIQIHVPY---LEGTAQERLFRWYHEGLNAFEHTCPTGRALYDE-FGDELI-PYL 644 (955)
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHH-HHH
T ss_conf 258-98765889985206542786750798620---289889999999998888975569118999999-999999-998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 61115538983389999999999999828887676666525654885116734389988899999987508998999999
Q gi|254780947|r 985 GEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHF 1064 (1187)
Q Consensus 985 G~~QsG~i~~vG~~ly~~ml~~av~~~kg~~~~~~~~~~~~i~~~~~~~ip~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~ 1064 (1187)
... ...+++-.+.-..+...+++.+- +.--+. =|.++++-|+ ..+ .+-..|+...+..++..+
T Consensus 645 ~~~-----~~~~~~~li~~~~~~~~~l~~~l---e~Grd~--LLe~ns~~~~-----~a~--~l~~~i~~~d~~~~l~~~ 707 (955)
T PRK04914 645 ASP-----DTDGLDDLIAETREQHEALKAQL---EQGRDR--LLELNSCGGE-----KAQ--ALAEAIAEQDDDTNLPNF 707 (955)
T ss_pred HCC-----CHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHCCCHH-----HHH--HHHHHHHHHCCCHHHHHH
T ss_conf 477-----85789999999999999999999---844577--7776268817-----799--999999863150569999
Q ss_pred HHHHHHHCCC
Q ss_conf 9997762488
Q gi|254780947|r 1065 KEEMVDRFGP 1074 (1187)
Q Consensus 1065 ~~el~drfG~ 1074 (1187)
...+-|+||-
T Consensus 708 ~~~~~d~~gv 717 (955)
T PRK04914 708 ALNLFDIIGI 717 (955)
T ss_pred HHHHHHHHCC
T ss_conf 9999998295
No 57
>KOG0338 consensus
Probab=99.21 E-value=9.3e-09 Score=86.22 Aligned_cols=311 Identities=22% Similarity=0.245 Sum_probs=201.6
Q ss_pred HCCC-CCCHHHHHHHH--HHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-----------CCCCEEEEEECHHHH
Q ss_conf 4888-88744899999--998760598854144316654324899999998751-----------127549998243665
Q gi|254780947|r 621 RFPH-VETEDQEKAID--AVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-----------MNGLQVAVIAPTTLL 686 (1187)
Q Consensus 621 ~Fpy-eET~DQ~~AI~--eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-----------~~gkQvavlvPTTiL 686 (1187)
...| ..||=|..+|- -.=.| =.-|-=-|-||| |||.-- ..---|.|||||-=|
T Consensus 198 ~lGy~~PTpIQ~a~IPvallgkD--------Ica~A~TGsGKT-----AAF~lPiLERLlYrPk~~~~TRVLVL~PTREL 264 (691)
T KOG0338 198 TLGYKKPTPIQVATIPVALLGKD--------ICACAATGSGKT-----AAFALPILERLLYRPKKVAATRVLVLVPTREL 264 (691)
T ss_pred HCCCCCCCCHHHHCCCHHHHCCH--------HHHEECCCCCCH-----HHHHHHHHHHHHCCCCCCCCEEEEEEECCHHH
T ss_conf 43878887403310127752222--------564011468711-----45678899998527356761269998350899
Q ss_pred HHHHHHHHHH--HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC------HHHHCCCCCCCCCCEEEEECHHH
Q ss_conf 5589999998--606789833541066630256777753122576089852------06542785202365699722233
Q gi|254780947|r 687 VRQHFRLFSE--RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT------HALLNPKITFANLGLIIIDEEQH 758 (1187)
Q Consensus 687 a~QH~~tf~~--Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT------H~ll~~~v~f~~LgLliiDEEqr 758 (1187)
|-|-+..+++ +|-+ |.+++---=-+-|.|.+.+.. .-||||.| |-==|-.+...++-.||.||--|
T Consensus 265 aiQv~sV~~qlaqFt~--I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338 265 AIQVHSVTKQLAQFTD--ITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred HHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHH----CCCEEEECCHHHHHHHCCCCCCCCCCEEEEEECHHHH
T ss_conf 9999999999876604--024445247457889999830----8987994650588875158876534325777333888
Q ss_pred -----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH-HHHCCCCCCEEECCCCCCCCEEE--EEEEC-CHHHHHHHHHH
Q ss_conf -----00888998863167884899953534088999-97122254122015788775379--99857-97898999998
Q gi|254780947|r 759 -----FGVKHKEALKETHTGVHVLTLSATPIPRTLQL-AITGVRELSLISMPPINRIACRT--SISIF-DPLVVRETLMR 829 (1187)
Q Consensus 759 -----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~m-sl~g~rd~S~i~tpP~~R~~v~T--~v~~~-~~~~i~~ai~r 829 (1187)
|--.-+|-+...-.+--.+-.|||-----=.+ |||==+-+-+.-.||.++-|-.| ||.-. +.+..|+|+.-
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHEECCCCCCCCHHHHH
T ss_conf 99999999999999855102300121122578899999755179858985786544404447781005564444178999
Q ss_pred HH-----HHCCEEEEEECCCCCHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCC
Q ss_conf 98-----7188599982644692889999986165--4648886134674789999999963887579761020036332
Q gi|254780947|r 830 EY-----YRGGQSFYVCPRLSDLEKCYTFLQSEVP--ELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDL 902 (1187)
Q Consensus 830 El-----~RgGQvf~v~nrv~~i~~~~~~l~~l~p--~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDi 902 (1187)
-| .+.--||+ - -...|.+++-|+- ..+++=.||-++..+==+...+|-++++||||||-.---||||
T Consensus 419 ~l~~rtf~~~~ivFv-~-----tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338 419 SLITRTFQDRTIVFV-R-----TKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred HHHHHHCCCCEEEEE-E-----HHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCC
T ss_conf 999876043369997-2-----0877889999998730106655054108889999998774568779872044446776
Q ss_pred CCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2332667625023588604553221035676736999966888889889999999997255
Q gi|254780947|r 903 PKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 903 p~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
+.+-|.|=+.+-+-==.-||- =||-.|-+|-+|+--++- +.-+|=|+.|-..++
T Consensus 493 ~gV~tVINy~mP~t~e~Y~HR-VGRTARAGRaGrsVtlvg------E~dRkllK~iik~~~ 546 (691)
T KOG0338 493 EGVQTVINYAMPKTIEHYLHR-VGRTARAGRAGRSVTLVG------ESDRKLLKEIIKSST 546 (691)
T ss_pred CCEEEEEECCCCHHHHHHHHH-HHHHHHCCCCCCEEEEEC------CCCHHHHHHHHHHHH
T ss_conf 551688842675268999987-400332456764378744------540889999985103
No 58
>KOG0333 consensus
Probab=99.21 E-value=9.7e-08 Score=78.36 Aligned_cols=304 Identities=23% Similarity=0.293 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHH-------HHHH-----HHHHHHHCCCCEEEEEECHHHHHHHHHH
Q ss_conf 887448999999987605988541443166543248-------9999-----9998751127549998243665558999
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT-------EIAL-----RAAFIAVMNGLQVAVIAPTTLLVRQHFR 692 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKT-------EVA~-----RAafkav~~gkQvavlvPTTiLa~QH~~ 692 (1187)
+.||=|-.||-=++.+ =|=|-.-.-|-||| =+.| +++---...|+-..+|+||-=||||-.+
T Consensus 267 eptpIqR~aipl~lQ~------rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIee 340 (673)
T KOG0333 267 EPTPIQRQAIPLGLQN------RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEE 340 (673)
T ss_pred CCCHHHHHHCCCHHCC------CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCEEEEECHHHHHHHHHHH
T ss_conf 9846788631101014------7723687316775320001588998708984144423468600120337999999999
Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHH-----CCCCCCCCCCEEEEECHHHH--------
Q ss_conf 99986067898335410666302567777531225760898520654-----27852023656997222330--------
Q gi|254780947|r 693 LFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALL-----NPKITFANLGLIIIDEEQHF-------- 759 (1187)
Q Consensus 693 tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll-----~~~v~f~~LgLliiDEEqrF-------- 759 (1187)
--..=-.++.+++-.+=--.+--||-- .|..| ++|||||--=| +.+...++---++.||--|-
T Consensus 341 Et~kf~~~lg~r~vsvigg~s~EEq~f---qls~g-ceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~d 416 (673)
T KOG0333 341 ETNKFGKPLGIRTVSVIGGLSFEEQGF---QLSMG-CEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPD 416 (673)
T ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHH---HHHCC-CEEEECCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCHH
T ss_conf 998750301432899854633665302---46415-41442474078887777888750584676240666542466677
Q ss_pred --HH-------H------HHHHHHHCCCC-------CCEEEEECCCCCHHHHHHHHCCCCCCEE----ECCCCCCCCEEE
Q ss_conf --08-------8------89988631678-------8489995353408899997122254122----015788775379
Q gi|254780947|r 760 --GV-------K------HKEALKETHTG-------VHVLTLSATPIPRTLQLAITGVRELSLI----SMPPINRIACRT 813 (1187)
Q Consensus 760 --GV-------~------~Ke~lk~~~~~-------vdvLtlsATPIPRTL~msl~g~rd~S~i----~tpP~~R~~v~T 813 (1187)
++ . .||-...++.| --.+++|||==|+-=.++-+=+|+=-+. .+-|.+|..=+-
T Consensus 417 v~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v 496 (673)
T KOG0333 417 VQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKV 496 (673)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHEEE
T ss_conf 88899838763458886310218888751031210257899844787679999999852776999546789860211178
Q ss_pred EEEECCHHHHHHHHHHHHHHCCE--EEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99857978989999989871885--9998264469288999998616546488861346747899999999638875797
Q gi|254780947|r 814 SISIFDPLVVRETLMREYYRGGQ--SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLL 891 (1187)
Q Consensus 814 ~v~~~~~~~i~~ai~rEl~RgGQ--vf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv 891 (1187)
+-+.-|+. +.++.-=|..+++ +-.-.|-+++.+.+|..|.++= .++.+.||--+..|=|....+|-+|..||||
T Consensus 497 ~m~~ed~k--~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlV 572 (673)
T KOG0333 497 EMVSEDEK--RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAG--YKVTTLHGGKSQEQRENALADFREGTGDILV 572 (673)
T ss_pred EEECCHHH--HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 88155688--9999999984799987999831324899999986443--2479961785277899999998715787799
Q ss_pred ECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCC
Q ss_conf 6102003633223326676250235886045532-2103567673699996688
Q gi|254780947|r 892 STSIVESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 892 ~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~ 944 (1187)
||-+.--||||||+--.| ++|+=--..-|--| ||-||-.+-+-|-=|+.+.
T Consensus 573 aTDvAgRGIDIpnVSlVi--nydmaksieDYtHRIGRTgRAGk~GtaiSflt~~ 624 (673)
T KOG0333 573 ATDVAGRGIDIPNVSLVI--NYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA 624 (673)
T ss_pred EECCCCCCCCCCCCCEEE--ECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 832212577777612146--2205565899988742344466675368986401
No 59
>KOG0335 consensus
Probab=99.20 E-value=3.3e-07 Score=74.27 Aligned_cols=320 Identities=21% Similarity=0.270 Sum_probs=209.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----HHCC-------------CCEEEEEECHHHHHH
Q ss_conf 7448999999987605988541443166543248999999987-----5112-------------754999824366555
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFI-----AVMN-------------GLQVAVIAPTTLLVR 688 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafk-----av~~-------------gkQvavlvPTTiLa~ 688 (1187)
||=|.-||.-|.+-- |=+.|+--|-||| |||. ..++ +-+..+|+||-=||.
T Consensus 98 tpvQk~sip~i~~Gr------dlmacAqTGsGKT-----~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335 98 TPVQKYSIPIISGGR------DLMACAQTGSGKT-----AAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVD 166 (482)
T ss_pred CCCEECCCCEEECCC------CEEEECCCCCCCH-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHH
T ss_conf 861560422442588------4278825788513-----78888899999864865666567788972599817378766
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-----HHHCCCCCCCCCCEEEEECHHH-----
Q ss_conf 899999986067898335410666302567777531225760898520-----6542785202365699722233-----
Q gi|254780947|r 689 QHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-----ALLNPKITFANLGLIIIDEEQH----- 758 (1187)
Q Consensus 689 QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-----~ll~~~v~f~~LgLliiDEEqr----- 758 (1187)
|-|++-+.=--.-.+++...-+=..-..|. ..+ ...+||+++|- -+=-++|...+++.+|+||--|
T Consensus 167 Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~---~~~-~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m 242 (482)
T KOG0335 167 QIYNEARKFSYLSGMKSVVVYGGTDLGAQL---RFI-KRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM 242 (482)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCHHHHH---HHH-CCCCCEEEECCCHHHHHHHCCEEEHHHCCEEEECCHHHHHHHC
T ss_conf 788888764022122033005784454422---333-2575578855750564554151126238589952367766632
Q ss_pred -HHHHHHHHHHHCC----CCCCEEEEECCCCCHHHHH-HHHCCCCC------CEEECCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf -0088899886316----7884899953534088999-97122254------1220157887753799985797898999
Q gi|254780947|r 759 -FGVKHKEALKETH----TGVHVLTLSATPIPRTLQL-AITGVREL------SLISMPPINRIACRTSISIFDPLVVRET 826 (1187)
Q Consensus 759 -FGV~~Ke~lk~~~----~~vdvLtlsATPIPRTL~m-sl~g~rd~------S~i~tpP~~R~~v~T~v~~~~~~~i~~a 826 (1187)
||-.=...+-.+. .+--.+--||| -|+-+|. +.-=++|. ..+.+.+++=. --+...++.-.+..
T Consensus 243 gF~p~Ir~Iv~~~~~~~~~~~qt~mFSAt-fp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~---q~i~~V~~~~kr~~ 318 (482)
T KOG0335 243 GFEPQIRKIVEQLGMPPKNNRQTLLFSAT-FPKEIQRLAADFLKDNYIFLAVGRVGSTSENIT---QKILFVNEMEKRSK 318 (482)
T ss_pred CCCHHHHHHHCCCCCCCCCCEEEEEEECC-CCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCE---EEEEEECCHHHHHH
T ss_conf 66620799962558887466137887355-775666447887641513888753046665634---67664211135789
Q ss_pred HHHHHH-------HCC----EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 998987-------188----599982644692889999986165464888613467478999999996388757976102
Q gi|254780947|r 827 LMREYY-------RGG----QSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSI 895 (1187)
Q Consensus 827 i~rEl~-------RgG----Qvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtI 895 (1187)
+..=|. +|+ -+-.-+.+++.-..++..|... ..+..-.||--+..|-|+...+|-+|++.|||||.|
T Consensus 319 Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~V 396 (482)
T KOG0335 319 LLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNV 396 (482)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC--CCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHH
T ss_conf 998861346786657764313899961300326999998617--987456033255637999987764698667987036
Q ss_pred EECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 003633223326676250235886045532-2103567673699996688888988999999999725565248999
Q gi|254780947|r 896 VESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLA 971 (1187)
Q Consensus 896 iEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA 971 (1187)
-.-||||||+---|.++--.- ..=|=-| ||+||...-+.|--|+. ...+..+..=.+.+.|..+.=--|.-+
T Consensus 397 aaRGlDi~~V~hVInyDmP~d--~d~YvHRIGRTGR~Gn~G~atsf~n--~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335 397 AARGLDIPNVKHVINYDMPAD--IDDYVHRIGRTGRVGNGGRATSFFN--EKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred HHCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCCCCCCEEEEEEC--CCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 654788768743588636752--4667774154355777732688764--743006899999999842637477775
No 60
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.17 E-value=2.3e-10 Score=98.68 Aligned_cols=100 Identities=28% Similarity=0.286 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88874489999999876059885414431665432489999999875112754999824366555899999986067898
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
++.-|-|.+|++++++. . .-+||.--|.|||-+++.++......++.|.|+|||+.|+.|..+.|
T Consensus 2 ~~LR~yQ~~a~~~~~~~---~---~~~i~~pTGsGKT~~~~~~i~~~~~~~~~~lvlvp~~~L~~Q~~~~~--------- 66 (103)
T pfam04851 2 LELRPYQIEAIRNLLEK---K---RGLIVMATGSGKTLTAAKLIARLLKGKKKVLFLVPRKDLLEQALEEF--------- 66 (103)
T ss_pred CCCCHHHHHHHHHHHHC---C---CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH---------
T ss_conf 98729999999999963---9---86999589998799999999999846992999908299999999965---------
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHH-HHHHHHCCCCCCEEEEECC
Q ss_conf 335410666302567777531225760898520654278520236569972223300888-9988631678848999535
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKH-KEALKETHTGVHVLTLSAT 782 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~-Ke~lk~~~~~vdvLtlsAT 782 (1187)
|+|+||-||.+-.. ..++.+...+--+|-||||
T Consensus 67 ----------------------------------------------lii~DE~H~~~a~~~~~~l~~~~~~~~~lGlTAT 100 (103)
T pfam04851 67 ----------------------------------------------VIIIDEAHHSSAKTKYRKILEYFKPAFLLGLTAT 100 (103)
T ss_pred ----------------------------------------------HHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf ----------------------------------------------6460163523537899999995772608998008
Q ss_pred CC
Q ss_conf 34
Q gi|254780947|r 783 PI 784 (1187)
Q Consensus 783 PI 784 (1187)
|.
T Consensus 101 P~ 102 (103)
T pfam04851 101 PE 102 (103)
T ss_pred CC
T ss_conf 88
No 61
>KOG0951 consensus
Probab=99.16 E-value=2.2e-08 Score=83.31 Aligned_cols=294 Identities=23% Similarity=0.339 Sum_probs=193.3
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC-----------EEEEEECHHHHHHHHHHHHHHHHC
Q ss_conf 999999987605988541443166543248999999987511275-----------499982436655589999998606
Q gi|254780947|r 631 EKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGL-----------QVAVIAPTTLLVRQHFRLFSERFQ 699 (1187)
Q Consensus 631 ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gk-----------QvavlvPTTiLa~QH~~tf~~Rf~ 699 (1187)
+.-|+.-.-|-....-=.-|+||--|-|||-|||+-+...+..|+ -+...+|+--|+|---.+|++|++
T Consensus 310 LNrIQS~V~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLVqE~VgsfSkRla 389 (1674)
T KOG0951 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 66788777788755767378742678882379999999998535454454102561379984289999999988886423
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHH------CCCCCCC-CCCEEEEECHHHHH-----------H
Q ss_conf 7898335410666302567777531225760898520654------2785202-36569972223300-----------8
Q gi|254780947|r 700 GFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALL------NPKITFA-NLGLIIIDEEQHFG-----------V 761 (1187)
Q Consensus 700 ~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll------~~~v~f~-~LgLliiDEEqrFG-----------V 761 (1187)
+|+|+|.-++|=.+- ..+.+. ...|++||--=- +.|-.+. =--|+||||=|=-+ |
T Consensus 390 ~~GItV~ElTgD~~l-----~~~qie--eTQVIVtTPEKwDiITRk~gdraY~qlvRLlIIDEIHLLhDdRGpVLESIVa 462 (1674)
T KOG0951 390 PLGITVLELTGDSQL-----GKEQIE--ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred CCCCEEEEECCCCCC-----HHHHHH--CCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 567179873265410-----044321--2202870642222111046742388888887654443215566407889999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHH-HH-----HCCCCC--CEEECCCCCCCCEE-EEE--EECCH----H----H
Q ss_conf 88998863167884899953534088999-97-----122254--12201578877537-999--85797----8----9
Q gi|254780947|r 762 KHKEALKETHTGVHVLTLSATPIPRTLQL-AI-----TGVREL--SLISMPPINRIACR-TSI--SIFDP----L----V 822 (1187)
Q Consensus 762 ~~Ke~lk~~~~~vdvLtlsATPIPRTL~m-sl-----~g~rd~--S~i~tpP~~R~~v~-T~v--~~~~~----~----~ 822 (1187)
+.+-+...-..++..--||||= |--..- +. -|+=+. |. .-.|.. -|+ ++.++ . +
T Consensus 463 Rt~r~ses~~e~~RlVGLSATL-PNy~DV~~Fl~v~~~glf~fd~sy------RpvPL~qq~Igitek~~~~~~qamNe~ 535 (1674)
T KOG0951 463 RTFRRSESTEEGSRLVGLSATL-PNYEDVASFLRVDPEGLFYFDSSY------RPVPLKQQYIGITEKKPLKRFQAMNEA 535 (1674)
T ss_pred HHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCCCCCCCCCCCC------CCCCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 9999865124574364101557-861655777555853241357555------767764147633037806777777899
Q ss_pred HHHHHHHHHHHCCEE-EEEECCCCCHHHH-----------------------------------HHHHHHHCCCCCEEEE
Q ss_conf 899999898718859-9982644692889-----------------------------------9999861654648886
Q gi|254780947|r 823 VRETLMREYYRGGQS-FYVCPRLSDLEKC-----------------------------------YTFLQSEVPELKIAMA 866 (1187)
Q Consensus 823 i~~ai~rEl~RgGQv-f~v~nrv~~i~~~-----------------------------------~~~l~~l~p~~~i~va 866 (1187)
.-+-|+.-... +|| -|||-|-|+-+.. -..|++|+|- .+|+-
T Consensus 536 ~yeKVme~agk-~qVLVFVHsRKET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpy-gfaIH 613 (1674)
T KOG0951 536 CYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPY-GFAIH 613 (1674)
T ss_pred HHHHHHHHCCC-CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC-CCEEE
T ss_conf 99999973787-85899998335788999999998864537999876344114565544420158307877313-51331
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHH--------HCCCCHH--HHHHHHCCCCCCCCE
Q ss_conf 134674789999999963887579761020036332233266762502--------3588604--553221035676736
Q gi|254780947|r 867 HGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRAD--------MFGLAQL--YQLRGRVGRSKIASF 936 (1187)
Q Consensus 867 HGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad--------~~GLaql--yQlrGRVGRs~~~ay 936 (1187)
|.-|+-.+-+.+=--|.+|+++|||||.--+=|+..| |.|.||...+ ..-|+++ -|+=||-||+.--.+
T Consensus 614 hAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ 692 (1674)
T KOG0951 614 HAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTC 692 (1674)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHHHCCCC-CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 1677862377899987448626887502456424777-626896076215834576662787999999754489764767
Q ss_pred EEEEE
Q ss_conf 99996
Q gi|254780947|r 937 ALFLL 941 (1187)
Q Consensus 937 ayl~~ 941 (1187)
-=-++
T Consensus 693 gegii 697 (1674)
T KOG0951 693 GEGII 697 (1674)
T ss_pred CCEEE
T ss_conf 86455
No 62
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.3e-08 Score=85.02 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=55.3
Q ss_pred ECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-HHCCCCCHHHHHHHHHHHH
Q ss_conf 803765227999999-98629989999299899999999999857998099857224670-1004899899999999999
Q gi|254780947|r 20 LSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLP-YDRVSPSPYVVTRRLSCIS 97 (1187)
Q Consensus 20 l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LP-Yd~~sp~~di~~eRl~~L~ 97 (1187)
-+|+.-+...+++|. ++..++..++|.|+..-+.|.++-|+.|..+.. +|+.+- |...-|. .++=++|.
T Consensus 105 PTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~-----~~~~~~~yh~~l~~----~ekee~le 175 (1187)
T COG1110 105 PTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG-----SLDVLVVYHSALPT----KEKEEALE 175 (1187)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCCCH----HHHHHHHH
T ss_conf 7887654799999999875587499996678999999999999886537-----85246653123665----77999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 9841244688769995667852369
Q gi|254780947|r 98 NLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 98 ~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
++. ++...|+|||..=|.++.
T Consensus 176 ~i~----~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 176 RIE----SGDFDILITTSQFLSKRF 196 (1187)
T ss_pred HHH----CCCCCEEEEEHHHHHHHH
T ss_conf 986----599639997478788669
No 63
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.14 E-value=1.8e-10 Score=99.43 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=74.6
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHC
Q ss_conf 89999986165464888613467478999999996388757976102003633223326676250235886045532210
Q gi|254780947|r 849 KCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRV 928 (1187)
Q Consensus 849 ~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRV 928 (1187)
.++..|++. +.++...||+|+..+-++++.+|.+++.+|||||.+.+.|+|+|+++++|+.+. ....+++.|..||+
T Consensus 2 ~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gidl~~~~~vI~~~~-~~~~~~~~Q~~GR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL-PWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEECC-CCCHHHHHHHHCCC
T ss_conf 789999888--991999989699999999999998799719999502421148988999999789-96989999997258
Q ss_pred CCCC
Q ss_conf 3567
Q gi|254780947|r 929 GRSK 932 (1187)
Q Consensus 929 GRs~ 932 (1187)
||.+
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred CCCC
T ss_conf 7899
No 64
>KOG0328 consensus
Probab=99.14 E-value=1.5e-07 Score=76.90 Aligned_cols=296 Identities=20% Similarity=0.254 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC--------CCCEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 48999999987605988541443166543248999999987511--------2754999824366555899999986067
Q gi|254780947|r 629 DQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM--------NGLQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 629 DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~--------~gkQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
=|.+||-.|++ --|-..----|-||| |+|-+-. -.-||.+|.||-=||-|--++...-=.
T Consensus 53 IQqrAi~~Ilk------GrdViaQaqSGTGKT-----a~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~- 120 (400)
T KOG0328 53 IQQRAIPQILK------GRDVIAQAQSGTGKT-----ATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGD- 120 (400)
T ss_pred HHHHHHHHHHC------CCCEEEEECCCCCCE-----EEEEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHCC-
T ss_conf 77610245633------661478704788844-----789866314034342003578954708999999999998324-
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-H----HCCCCCCCCCCEEEEECH-----HHHHHHHHHHHHHC
Q ss_conf 8983354106663025677775312257608985206-5----427852023656997222-----33008889988631
Q gi|254780947|r 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-L----LNPKITFANLGLIIIDEE-----QHFGVKHKEALKET 770 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-l----l~~~v~f~~LgLliiDEE-----qrFGV~~Ke~lk~~ 770 (1187)
|.+|.+-+-. .-+.-.+-++.+.-|. .+|.||-- + =-...+.++.-+||.||- +-|+-.-=.-++.+
T Consensus 121 -~mnvq~haci-gg~n~gedikkld~G~-hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328 121 -YMNVQCHACI-GGKNLGEDIKKLDYGQ-HVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred -CCCCEEEEEE-CCCCCCHHHHHHCCCC-EEEECCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf -2364489873-5775103456532561-475079815999998623101142689854589998756778899999847
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECC--HHHHHH---HHHHHH------------HH
Q ss_conf 6788489995353408899997122254122015788775379998579--789899---999898------------71
Q gi|254780947|r 771 HTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFD--PLVVRE---TLMREY------------YR 833 (1187)
Q Consensus 771 ~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~--~~~i~~---ai~rEl------------~R 833 (1187)
-++.-|.-.|||-=---|+|.--= .| -||+-+|..-. .+-|+. |+.+|- --
T Consensus 198 p~~~Qvv~~SATlp~eilemt~kf-------mt-----dpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt 265 (400)
T KOG0328 198 PPGAQVVLVSATLPHEILEMTEKF-------MT-----DPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 265 (400)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHH-------CC-----CCEEEEEECCCCCHHHHHHHEEEECHHHHHHHHHHHHHHHHE
T ss_conf 998669999645869999999874-------48-----852688705777666655542441322553768988864306
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECH
Q ss_conf 88599982644692889999986165464888613467478999999996388757976102003633223326676250
Q gi|254780947|r 834 GGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA 913 (1187)
Q Consensus 834 gGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~a 913 (1187)
=-|.-.-||--...+-..+++++-. -.|.--||-|+.+|-|++|.+|-.|+--||+||-+---|+|+|-+|-+|=++-
T Consensus 266 ItQavIFcnTk~kVdwLtekm~~~n--ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL 343 (400)
T KOG0328 266 ITQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL 343 (400)
T ss_pred HHEEEEEECCCCHHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEEEEEECCC
T ss_conf 1147999626404368899988617--33663057764567999998765478349997104442587500578994378
Q ss_pred HHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 235886045532-210356767369999668888898899999999972
Q gi|254780947|r 914 DMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 914 d~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
-.. -|||=-| ||-||-+|.+.|-=++.++ -.+-|.-|+.+
T Consensus 344 P~n--re~YIHRIGRSGRFGRkGvainFVk~~------d~~~lrdieq~ 384 (400)
T KOG0328 344 PNN--RELYIHRIGRSGRFGRKGVAINFVKSD------DLRILRDIEQY 384 (400)
T ss_pred CCC--HHHHHHHHCCCCCCCCCCEEEEEECHH------HHHHHHHHHHH
T ss_conf 854--878766501356567760699875178------89999999999
No 65
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.14 E-value=3.8e-08 Score=81.53 Aligned_cols=180 Identities=22% Similarity=0.194 Sum_probs=137.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEC
Q ss_conf 7878467898998488888744899999998760598854144316654324899999998751-----12754999824
Q gi|254780947|r 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-----MNGLQVAVIAP 682 (1187)
Q Consensus 608 f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-----~~gkQvavlvP 682 (1187)
+.-+....+..++.==...||=|..||..+++. -|=+++.--|=|||-..+=...-.+ .++-|+.||||
T Consensus 4 l~L~~~ll~~l~~~g~~~pt~IQ~~~ip~il~g------~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~P 77 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLSG------RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 965999999999879999999999999999779------98899757997222888869999986166768966999968
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-----HHHHCCCCCCCCCCEEEEECHH
Q ss_conf 36655589999998606789833541066630256777753122576089852-----0654278520236569972223
Q gi|254780947|r 683 TTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-----HALLNPKITFANLGLIIIDEEQ 757 (1187)
Q Consensus 683 TTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-----H~ll~~~v~f~~LgLliiDEEq 757 (1187)
|-=||.|-|+.|..--++.++++..+..=.+.+++.+. ++. ..|||||| +-+-++.+.++++..+|+||=+
T Consensus 78 TrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD 153 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LKR-GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH---HHC-CCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 79999999999998505798389998389887999999---853-87599968189999998488651322489998588
Q ss_pred H-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 3-----008889988631678848999535340889999712225
Q gi|254780947|r 758 H-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRE 797 (1187)
Q Consensus 758 r-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd 797 (1187)
+ |+-.-++-++.+..+.-++-.|||=-+...+++-.-+|+
T Consensus 154 ~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l~~~~l~~ 198 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRN 198 (203)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCC
T ss_conf 887477699999999858967779999804998899999997799
No 66
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=99.13 E-value=1.4e-10 Score=100.34 Aligned_cols=73 Identities=33% Similarity=0.556 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCC
Q ss_conf 54648886134674789999999963887579761020036332233266762502358860455322103567
Q gi|254780947|r 859 PELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSK 932 (1187)
Q Consensus 859 p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~ 932 (1187)
+..++...||+|+.++-++++.+|.+++++|||||.+.+.|+|+|++|++|+.+.. .-.++++|..||+||.+
T Consensus 6 ~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gid~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g 78 (78)
T pfam00271 6 PGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNVVINYDLP-WNPASYIQRIGRAGRAG 78 (78)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEECCC-CCHHHHHHHHCCCCCCC
T ss_conf 89859998697999999999999987997399992565256778789999997899-69899999972687799
No 67
>KOG0342 consensus
Probab=99.12 E-value=9.5e-08 Score=78.43 Aligned_cols=304 Identities=23% Similarity=0.299 Sum_probs=216.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHH--------HHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 9984888887448999999987605988541443166543248--------99999998751127549998243665558
Q gi|254780947|r 618 FIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT--------EIALRAAFIAVMNGLQVAVIAPTTLLVRQ 689 (1187)
Q Consensus 618 Fe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKT--------EVA~RAafkav~~gkQvavlvPTTiLa~Q 689 (1187)
++..|+. -|+=|.++|..++. ++ |-|.----|-||| |.-+.+.|+-= +|--|.|+|||--||-|
T Consensus 98 ~~~GF~~-MT~VQ~~ti~pll~----gk--Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlIi~PTRELA~Q 169 (543)
T KOG0342 98 KEMGFET-MTPVQQKTIPPLLE----GK--DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLIICPTRELAMQ 169 (543)
T ss_pred HHCCCCC-CHHHHHHHCCCCCC----CC--CCEEEECCCCCCEEEEHHHHHHHHHHCCCCCC-CCEEEEEECCCHHHHHH
T ss_conf 7358530-02888742676679----84--31245126887410104689999985365777-87148996562899998
Q ss_pred HHHHHHHHHCCC-CCCEEEE---CCCCCCHHHHHHHHHHCCCCCEEEEECH-HHH-----CCCCCCCCCCEEEEECHHH-
Q ss_conf 999999860678-9833541---0666302567777531225760898520-654-----2785202365699722233-
Q gi|254780947|r 690 HFRLFSERFQGF-SVRIASI---SRFVQTKEAALHKKSITEGQVDIVIGTH-ALL-----NPKITFANLGLIIIDEEQH- 758 (1187)
Q Consensus 690 H~~tf~~Rf~~~-pv~i~~l---sRf~~~~e~~~i~~~l~~G~idiviGTH-~ll-----~~~v~f~~LgLliiDEEqr- 758 (1187)
-|.--++=++.- .+.+.++ ++|+ .|+.+ +.. -+.|+|.|- ||+ .+..-|+|+-.||+||--|
T Consensus 170 ~~~eak~Ll~~h~~~~v~~viGG~~~~--~e~~k----l~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrl 242 (543)
T KOG0342 170 IFAEAKELLKYHESITVGIVIGGNNFS--VEADK----LVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRL 242 (543)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCH--HHHHH----HHC-CCCEEEECCCHHHHHHHCCCCCHHHCCCEEEEECCHHH
T ss_conf 999999999727677347876774105--89997----515-55278867841776765578412212203575020356
Q ss_pred ----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC-CCCEEECCCC------CCCCEEEEEEEC-CHH--HHH
Q ss_conf ----00888998863167884899953534088999971222-5412201578------877537999857-978--989
Q gi|254780947|r 759 ----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVR-ELSLISMPPI------NRIACRTSISIF-DPL--VVR 824 (1187)
Q Consensus 759 ----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~r-d~S~i~tpP~------~R~~v~T~v~~~-~~~--~i~ 824 (1187)
|--.-+--++.+-.+--.+--|||-=|.-=+.+-.-++ |-..|.+-.. +|.+ |-||..- +.. ++-
T Consensus 243 Ld~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~-Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342 243 LDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLE-QGYVVAPSDSRFSLLY 321 (543)
T ss_pred HHCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCC-CEEEECCCCCHHHHHH
T ss_conf 652518889999875235530467647896889999987633774686247899730232466-4079626541179999
Q ss_pred HHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCC
Q ss_conf 99998987188599982644692889999986165464888613467478999999996388757976102003633223
Q gi|254780947|r 825 ETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPK 904 (1187)
Q Consensus 825 ~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~ 904 (1187)
.-+.+-+.| =-|-.-+.-+..-.-+++.|..+ +..|--.||+++...=-.+...|.+-+--|||||-.---|+|||+
T Consensus 322 ~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342 322 TFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHCCC-CEEEEEECHHHHHHHHHHHHHHC--CCCHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCHHHCCCCCCC
T ss_conf 999973477-24999933026799999998506--875324425785322023899886106643996032213688888
Q ss_pred CCEEEEECHHHCCCCHHHHH---HHHCCCCCCCCEEEEEECCC
Q ss_conf 32667625023588604553---22103567673699996688
Q gi|254780947|r 905 ANTMIVQRADMFGLAQLYQL---RGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 905 aNTiii~~ad~~GLaqlyQl---rGRVGRs~~~ayayl~~~~~ 944 (1187)
+.-++=.+. =+..-|- =||-||++..+-|||+.-|.
T Consensus 399 V~~VvQ~~~----P~d~~~YIHRvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342 399 VDWVVQYDP----PSDPEQYIHRVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred CEEEEEECC----CCCHHHHHHHHCCCCCCCCCCEEEEEECHH
T ss_conf 407998589----999899898732122368986389996766
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.11 E-value=4e-09 Score=89.07 Aligned_cols=274 Identities=23% Similarity=0.320 Sum_probs=189.4
Q ss_pred CCCCHHHHHHHHHHH---HHCCCC--EEEEEECHHHHHHHHHHHHHH----HHCCCCCCEEEEC--CCCCCHHH------
Q ss_conf 543248999999987---511275--499982436655589999998----6067898335410--66630256------
Q gi|254780947|r 655 VGFGKTEIALRAAFI---AVMNGL--QVAVIAPTTLLVRQHFRLFSE----RFQGFSVRIASIS--RFVQTKEA------ 717 (1187)
Q Consensus 655 VGfGKTEVA~RAafk---av~~gk--QvavlvPTTiLa~QH~~tf~~----Rf~~~pv~i~~ls--Rf~~~~e~------ 717 (1187)
-||||||.|+==|-+ ..-.++ .+.+.-||-+.++-=|+++++ =|++ |=++..++ ||.-.+..
T Consensus 8 TG~GKTe~aL~~A~~sah~~k~~~~~~~I~alP~r~~~na~~~r~~~sash~Fg~-P~~~~~~~ssrfnh~~~~ik~~~~ 86 (424)
T TIGR01587 8 TGYGKTEAALLWALKSAHLIKKQKADKVIFALPTRVTINAMYRRLKESASHLFGS-PELVLLLHSSRFNHLASSIKLRKI 86 (424)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8998789999999863666422444010122026888999999999867754178-543233455226789999998776
Q ss_pred ---------------------HHHHHHHCCCCCEEEEECHHH-HCCCCCCCC-------CCEEEEECHHHHHHHHHHH-H
Q ss_conf ---------------------777753122576089852065-427852023-------6569972223300888998-8
Q gi|254780947|r 718 ---------------------ALHKKSITEGQVDIVIGTHAL-LNPKITFAN-------LGLIIIDEEQHFGVKHKEA-L 767 (1187)
Q Consensus 718 ---------------------~~i~~~l~~G~idiviGTH~l-l~~~v~f~~-------LgLliiDEEqrFGV~~Ke~-l 767 (1187)
+-+...++--++|.++----. -|..+.+.. ..+|||||=|=.--.-++. |
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~DE~h~y~~~~~~~~~ 166 (424)
T TIGR01587 87 KEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIFDEVHAYEEYTLALTI 166 (424)
T ss_pred HCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30478279999998522421210131788534122000000553445205688887777676562536777642555569
Q ss_pred ------HHCCCCCCEEEEECCCCCHHHHHHHH----C---CCCCCEEECCC-------------------C---CCCCEE
Q ss_conf ------63167884899953534088999971----2---22541220157-------------------8---877537
Q gi|254780947|r 768 ------KETHTGVHVLTLSATPIPRTLQLAIT----G---VRELSLISMPP-------------------I---NRIACR 812 (1187)
Q Consensus 768 ------k~~~~~vdvLtlsATPIPRTL~msl~----g---~rd~S~i~tpP-------------------~---~R~~v~ 812 (1187)
-++..++-+|-|||| +||-++=-|. + .-+-+...+-| . .|.|+-
T Consensus 167 l~~L~~~~~~~~~~~~lMsAT-lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GvnGaqrfdllahPe~~~~r~~~~~~~ 245 (424)
T TIGR01587 167 LAALEVLKIDNDVKILLMSAT-LPRELKKFLKEYLEKIEYVEENELLDLKEVEGVNGAQRFDLLAHPEFKEKRFENHRIS 245 (424)
T ss_pred HHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 999999998738988998405-6757899999873104763333557866435464202333321720210022157642
Q ss_pred EEEEE--CCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCHH---HHH---HHHHHHH
Q ss_conf 99985--797898999998987188599982644692889999986165464-88861346747---899---9999996
Q gi|254780947|r 813 TSISI--FDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELK-IAMAHGQMSPK---NLE---DKMNAFY 883 (1187)
Q Consensus 813 T~v~~--~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~-i~vaHGqm~~~---~le---~~m~~F~ 883 (1187)
-.... .+...+.+-..++..-++++-.++|-|+.=......+++.+|+.. |-.-||||.+. +.| ..|..|-
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~ 325 (424)
T TIGR01587 246 LIEKDKVGEISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELK 325 (424)
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 13432033134666677874157786699985438999999998512652002124404477003667767999999851
Q ss_pred C-----CCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf 3-----88757976102003633223326676250235886045532210356767
Q gi|254780947|r 884 E-----GQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIA 934 (1187)
Q Consensus 884 ~-----~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ 934 (1187)
+ ++-=|+|+|=+||.|||| .+|-||-+-| -+.-|-|==|||-|-+++
T Consensus 326 ~S~~~~~~~~v~V~TQv~E~SlD~-s~D~~iTe~a---P~d~LiQR~GR~~R~~~~ 377 (424)
T TIGR01587 326 KSAWKDNEKFVIVATQVIEVSLDI-SVDVMITELA---PIDSLIQRLGRLNRYGRK 377 (424)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEC-CCCHHHHHCC---CHHHHHHHHHHHCCCCCC
T ss_conf 013544577069987878886420-4441343115---012335542111011356
No 69
>KOG0340 consensus
Probab=99.08 E-value=6.2e-07 Score=72.18 Aligned_cols=333 Identities=19% Similarity=0.222 Sum_probs=220.0
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-------
Q ss_conf 87401567787846789899848-8888744899999998760598854144316654324899999998751-------
Q gi|254780947|r 600 RAIHSVPPLMVSQDLYSQFIKRF-PHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV------- 671 (1187)
Q Consensus 600 R~~~~g~~f~~d~~~~~eFe~~F-pyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav------- 671 (1187)
|..+++|+----.+|.-|=+... -+..||=|..||-.|++- -|=|=|---|-||| |||.--
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeG------rdcig~AkTGsGKT-----~AFaLPil~rLse 71 (442)
T KOG0340 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEG------RDCIGCAKTGSGKT-----AAFALPILNRLSE 71 (442)
T ss_pred CCCCCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCC------CCCCCCCCCCCCCC-----HHHHHHHHHHHCC
T ss_conf 533476444076389999999835889982676524878546------63103134688741-----1222787776133
Q ss_pred -CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH----HHCCC----
Q ss_conf -127549998243665558999999860678983354106663025677775312257608985206----54278----
Q gi|254780947|r 672 -MNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA----LLNPK---- 742 (1187)
Q Consensus 672 -~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~----ll~~~---- 742 (1187)
-.|-=.-||.||-=||-|--+-|.--=+...+++.++.-+.+.-.|..++.+ .=++||-|-- +++.+
T Consensus 72 dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatPGRlad~l~sn~~~~ 147 (442)
T KOG0340 72 DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATPGRLADHLSSNLGVC 147 (442)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCC----CCCEEECCCCCCCCCCCCCCCCC
T ss_conf 88760699954528888888899998456456327999756887645444266----98757517633354112687655
Q ss_pred -CCCCCCCEEEEECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHC------CCCCCEEECCC-CCCC
Q ss_conf -5202365699722233-----008889988631678848999535340889999712------22541220157-8877
Q gi|254780947|r 743 -ITFANLGLIIIDEEQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITG------VRELSLISMPP-INRI 809 (1187)
Q Consensus 743 -v~f~~LgLliiDEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g------~rd~S~i~tpP-~~R~ 809 (1187)
-.|++|-.+++||--| |-..-+--+..+-..=-.|-+||| |--|+++...- .-..|.+.--| .+++
T Consensus 148 ~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql~~~~i~k~~a~~~e~~~~vstvetL 226 (442)
T KOG0340 148 SWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQLFGCPITKSIAFELEVIDGVSTVETL 226 (442)
T ss_pred HHHHHCEEEEEECCHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEE-HHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHH
T ss_conf 2555300467741302654156056776665048876433799866-365799863687455502688526998725455
Q ss_pred CEEEEEEECCHHHHHHHHH-----HHHH-HCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 5379998579789899999-----8987-188599982644692889999986165464888613467478999999996
Q gi|254780947|r 810 ACRTSISIFDPLVVRETLM-----REYY-RGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFY 883 (1187)
Q Consensus 810 ~v~T~v~~~~~~~i~~ai~-----rEl~-RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~ 883 (1187)
- +-|+.. +.-+++|-. ..-+ -.|-+-.-.||-..-+..+..|+.| |.|++-.|+||+.+|=-.....|-
T Consensus 227 ~-q~yI~~--~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFr 301 (442)
T KOG0340 227 Y-QGYILV--SIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFR 301 (442)
T ss_pred H-HHEEEC--CHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHH--CEEEEEHHHCCHHHHHHHHHHHHH
T ss_conf 2-022205--44456788998775222135760899960468999999999630--344543110050888998998776
Q ss_pred CCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHH-HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 38875797610200363322332667625023588604553-2210356767369999668888898899999999972
Q gi|254780947|r 884 EGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQL-RGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 884 ~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQl-rGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
.+...||+||-.---|||||.+.-.|=++--+= -.-|=- -||-.|.+|.+-|-=++. +---++|+||++-
T Consensus 302 s~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~--P~~yiHRvGRtARAGR~G~aiSivt------~rDv~l~~aiE~~ 372 (442)
T KOG0340 302 SNAARILIATDVASRGLDIPTVELVVNHDIPRD--PKDYIHRVGRTARAGRKGMAISIVT------QRDVELLQAIEEE 372 (442)
T ss_pred HCCCCEEEEECHHHCCCCCCCEEEEEECCCCCC--HHHHHHHHCCHHCCCCCCCEEEEEC------HHHHHHHHHHHHH
T ss_conf 267408997313432789884467870688998--7888876030120567764289862------4227999999999
No 70
>KOG0339 consensus
Probab=99.06 E-value=6.1e-07 Score=72.24 Aligned_cols=337 Identities=19% Similarity=0.235 Sum_probs=224.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHCCCCE--------EEEEECHHHHHHHHHHHH
Q ss_conf 88744899999998760598854144316--65432489999999875112754--------999824366555899999
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLMDRLICG--DVGFGKTEIALRAAFIAVMNGLQ--------VAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PMDRLiCG--DVGfGKTEVA~RAafkav~~gkQ--------vavlvPTTiLa~QH~~tf 694 (1187)
..||=|..|+.-.+ |-|=|-| --|-|||---+|-.-.-||+-++ -.+||||-=||.|-|...
T Consensus 245 kptpiq~qalptal--------sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339 245 KPTPIQCQALPTAL--------SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred CCCCCCCCCCCCCC--------CCCCCHHEEECCCCCHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 67752334355224--------6652111121157505677777777741405206899976999806389999999999
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HHH----CCCCCCCCCCEEEEECHHH-----HHHHHH
Q ss_conf 986067898335410666302567777531225760898520-654----2785202365699722233-----008889
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-ALL----NPKITFANLGLIIIDEEQH-----FGVKHK 764 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~ll----~~~v~f~~LgLliiDEEqr-----FGV~~K 764 (1187)
+.=-+.|.+++-.+--=-|+-||-+-|+ .|- .|||.|- ||+ -|-+.+.+.-+|++||--| |--..|
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g~-EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVr 392 (731)
T KOG0339 317 KKFGKAYGLRVVAVYGGGSKWEQSKELK---EGA-EIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVR 392 (731)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHH---CCC-EEEEECHHHHHHHHHHHCCCCEEEEEEEEECHHHHHCCCCHHHHH
T ss_conf 9863112642788636874888777650---277-289966288899988603331003578871111131265479899
Q ss_pred HHHHHCCCCCCEEEEECCC---CCHHHHHHHHCCCCCCEEECCCCCCCCEE-EEEEECCHHHHHHHH--HHHHHHCCEEE
Q ss_conf 9886316788489995353---40889999712225412201578877537-999857978989999--98987188599
Q gi|254780947|r 765 EALKETHTGVHVLTLSATP---IPRTLQLAITGVRELSLISMPPINRIACR-TSISIFDPLVVRETL--MREYYRGGQSF 838 (1187)
Q Consensus 765 e~lk~~~~~vdvLtlsATP---IPRTL~msl~g~rd~S~i~tpP~~R~~v~-T~v~~~~~~~i~~ai--~rEl~RgGQvf 838 (1187)
----..|+.--+|-.|||= |-|--+-.|++-=-.-.-+-.-+|---.| .+|.+-++.-..--+ +-|..-.|-|.
T Consensus 393 SI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvl 472 (731)
T KOG0339 393 SIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVL 472 (731)
T ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99864488642798603106889999999735972678740102566524246523681788899999755013678479
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC
Q ss_conf 98264469288999998616546488861346747899999999638875797610200363322332667625023588
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL 918 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL 918 (1187)
|..-.-.+-+.+++.|+ +-+.+|...||-|...+--+++.+|-.++.+|||+|-.---|+|||.--|.|-. |.+-=
T Consensus 473 ifVTKk~~~e~i~a~Lk--lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny--D~ard 548 (731)
T KOG0339 473 IFVTKKADAEEIAANLK--LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY--DFARD 548 (731)
T ss_pred EEEECCCCHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCEEECC--CCCCH
T ss_conf 99942278999998732--056325652274566777779998762477548884076517875220102343--22210
Q ss_pred CHHH-HHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCC
Q ss_conf 6045-5322103567673699996688888988999999999725565--24899999985116
Q gi|254780947|r 919 AQLY-QLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLG--AGFQLASYDLDIRG 979 (1187)
Q Consensus 919 aqly-QlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lG--sGf~iA~~DleiRG 979 (1187)
-..| |.=||-||-+.++-||-++.... .+-|-.=...++.....= -=..+||.+-..|+
T Consensus 549 IdththrigrtgRag~kGvayTlvTeKD--a~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~ 610 (731)
T KOG0339 549 IDTHTHRIGRTGRAGEKGVAYTLVTEKD--AEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRS 610 (731)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECHHH--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6778877510233555651368733556--7776689988762365699689877756404345
No 71
>KOG0327 consensus
Probab=99.02 E-value=2.6e-07 Score=75.07 Aligned_cols=297 Identities=21% Similarity=0.297 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-------CEEEEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 4899999998760598854144316654324899999998751127-------549998243665558999999860678
Q gi|254780947|r 629 DQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG-------LQVAVIAPTTLLVRQHFRLFSERFQGF 701 (1187)
Q Consensus 629 DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g-------kQvavlvPTTiLa~QH~~tf~~Rf~~~ 701 (1187)
=|.+||--+..- -|-.+--+-|-|||-. -+.+++.+ .||.+|+||-.||+|-..-+..-+.-.
T Consensus 52 IQqrAI~p~i~G------~dv~~qaqsgTgKt~a----f~i~ilq~iD~~~ke~qalilaPtreLa~q~~~v~~~lg~~~ 121 (397)
T KOG0327 52 IQQRAILPCIKG------HDVIAQAQSGTGKTAA----FLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHM 121 (397)
T ss_pred HHHCCCCCCCCC------CCEEEEEECCCCCHHH----HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 776343553468------7446763025441146----678887513741677779886132788898999988641124
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-----HHHHCCCCCCCCCCEEEEEC---HHHHHHHHH--HHHHHCC
Q ss_conf 9833541066630256777753122576089852-----06542785202365699722---233008889--9886316
Q gi|254780947|r 702 SVRIASISRFVQTKEAALHKKSITEGQVDIVIGT-----HALLNPKITFANLGLIIIDE---EQHFGVKHK--EALKETH 771 (1187)
Q Consensus 702 pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-----H~ll~~~v~f~~LgLliiDE---EqrFGV~~K--e~lk~~~ 771 (1187)
.++|-.+.+..+-..+.+.++.. ..-||+|| |.|=.....-++.-+.++|| .=-+|.+.+ +-+..+-
T Consensus 122 ~~~v~~~igg~~~~~~~~~i~~~---~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp 198 (397)
T KOG0327 122 DVSVHACIGGTNVRREDQALLKD---KPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP 198 (397)
T ss_pred CEEEEEECCCCCCHHHHHHHHCC---CCEEECCCCHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHCC
T ss_conf 61466531764100345555204---763543785057776413645666546775243676630564899999998759
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHH---------------HHHHHHHHHCCE
Q ss_conf 78848999535340889999712225412201578877537999857978989---------------999989871885
Q gi|254780947|r 772 TGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVR---------------ETLMREYYRGGQ 836 (1187)
Q Consensus 772 ~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~---------------~ai~rEl~RgGQ 836 (1187)
++|-++-+|||=-+--|..+=.=. |.||.+-|..-. ...+ +-..+=..+-+|
T Consensus 199 ~~vQv~l~SAT~p~~vl~vt~~f~------------~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q 265 (397)
T KOG0327 199 SDVQVVLLSATMPSDVLEVTKKFM------------REPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYRRVTQ 265 (397)
T ss_pred CCHHHEEECCCCCHHHHHHHHHHC------------CCCEEEEECCHH-HHHHHEEEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 432201001368588999988740------------475689952002-0122200222010543112279999986431
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC
Q ss_conf 99982644692889999986165464888613467478999999996388757976102003633223326676250235
Q gi|254780947|r 837 SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF 916 (1187)
Q Consensus 837 vf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~ 916 (1187)
+-..+|-.+..+.+.+.| .--+-.+...||-|.+.+-+.+|..|..|..-||+.|..---||||.+.--.|-.++-
T Consensus 266 ~~if~nt~r~v~~l~~~L--~~~~~~~s~i~~d~~q~~R~~~~~~f~~g~srvlIttdl~argidv~~~slvinydlP-- 341 (397)
T KOG0327 266 AVIFCNTRRKVDNLTDKL--RAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLP-- 341 (397)
T ss_pred CEEEECCHHHHHHHHHHH--HHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCEEEEECCC--
T ss_conf 057851045677789998--6277337876346430034689998645872377412212465411101225650165--
Q ss_pred CCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 886045532-210356767369999668888898899999999972
Q gi|254780947|r 917 GLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 917 GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
.=.|=|=.| ||-||-++.+-|--++. +.-.+-|+.|..|
T Consensus 342 ~r~~~yihR~gr~gr~grkg~~in~v~------~~d~~~lk~ie~~ 381 (397)
T KOG0327 342 ARKENYIHRIGRAGRFGRKGVAINFVT------EEDVRDLKDIEKF 381 (397)
T ss_pred CCHHHHHHHCCCCCCCCCCCEEEEEEH------HHHHHHHHHHHHH
T ss_conf 206666652554565677713555201------7568888738986
No 72
>KOG0326 consensus
Probab=99.02 E-value=4.4e-08 Score=81.05 Aligned_cols=267 Identities=20% Similarity=0.253 Sum_probs=196.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH--------CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 44316654324899999998751--------1275499982436655589999998606789833541066630256777
Q gi|254780947|r 649 RLICGDVGFGKTEIALRAAFIAV--------MNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH 720 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~RAafkav--------~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i 720 (1187)
-|.-.--|-||| |||..- .+.-|..+||||-=||-|--+..++-=+...|+|.+-.-=.+- +..|
T Consensus 125 iLaRaKNGTGKT-----~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~l--rDDI 197 (459)
T KOG0326 125 ILARAKNGTGKT-----AAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSL--RDDI 197 (459)
T ss_pred HHHHCCCCCCCC-----CCEECHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCE
T ss_conf 555501898873-----304412566528221004479996163266788799999860468499994388654--4320
Q ss_pred HHHHCCCCCEEEEECH-H---HHCCCCC-CCCCCEEEEECH-----HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH-
Q ss_conf 7531225760898520-6---5427852-023656997222-----330088899886316788489995353408899-
Q gi|254780947|r 721 KKSITEGQVDIVIGTH-A---LLNPKIT-FANLGLIIIDEE-----QHFGVKHKEALKETHTGVHVLTLSATPIPRTLQ- 789 (1187)
Q Consensus 721 ~~~l~~G~idiviGTH-~---ll~~~v~-f~~LgLliiDEE-----qrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~- 789 (1187)
+ .| +..|.++|||- | |..|.|. +++--++|.||- +-|+-.--.-|--|-.+--+|--||| -|-|..
T Consensus 198 ~-Rl-~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT-FP~tVk~ 274 (459)
T KOG0326 198 M-RL-NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT-FPLTVKG 274 (459)
T ss_pred E-EE-CCCEEEEECCCHHHHHHHHCCCCCCHHCEEEEECHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHH
T ss_conf 5-61-5826999728717888886265220011478741055441414567899998757854204676313-6405888
Q ss_pred -----------------HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
Q ss_conf -----------------997122254122015788775379998579789899999898718859998264469288999
Q gi|254780947|r 790 -----------------LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYT 852 (1187)
Q Consensus 790 -----------------msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~ 852 (1187)
+.|.|+.. --+||.|.....--..+-.-|. =.|.-.-||.++..|-.|.
T Consensus 275 Fm~~~l~kPy~INLM~eLtl~GvtQ-------------yYafV~e~qKvhCLntLfskLq-INQsIIFCNS~~rVELLAk 340 (459)
T KOG0326 275 FMDRHLKKPYEINLMEELTLKGVTQ-------------YYAFVEERQKVHCLNTLFSKLQ-INQSIIFCNSTNRVELLAK 340 (459)
T ss_pred HHHHHCCCCCEEEHHHHHHHCCHHH-------------HEEEECHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHH
T ss_conf 9998605860220465632035232-------------1011023555564998988750-0445999636317679898
Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCC
Q ss_conf 99861654648886134674789999999963887579761020036332233266762502358860455322103567
Q gi|254780947|r 853 FLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSK 932 (1187)
Q Consensus 853 ~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~ 932 (1187)
+|.+|= ..--+.|.+|....-..|..+|.+|..-.||||-.+--||||+++|-.|=-|--+.-=+-||-+ ||-||-+
T Consensus 341 KITelG--yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRI-GRsGRFG 417 (459)
T KOG0326 341 KITELG--YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRI-GRSGRFG 417 (459)
T ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHC-CCCCCCC
T ss_conf 888616--4366778888776542455654325320124202330465541025999637887778999871-6776578
Q ss_pred CCCEEEEEEC
Q ss_conf 6736999966
Q gi|254780947|r 933 IASFALFLLP 942 (1187)
Q Consensus 933 ~~ayayl~~~ 942 (1187)
+.+-|-=++.
T Consensus 418 hlGlAInLit 427 (459)
T KOG0326 418 HLGLAINLIT 427 (459)
T ss_pred CCCEEEEEEE
T ss_conf 7624799875
No 73
>KOG0343 consensus
Probab=98.98 E-value=1.2e-06 Score=70.02 Aligned_cols=346 Identities=21% Similarity=0.247 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 9999999999999999999988740---1567787846789899848888874489999999876059885414431665
Q gi|254780947|r 579 KANLKKRLEDLAQKLVDIAAKRAIH---SVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDV 655 (1187)
Q Consensus 579 K~Kakk~v~diA~eLl~lyA~R~~~---~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDV 655 (1187)
|++-+++-++.-.+|-.-|+.=.+. +---|+.+..-.+-.-++==-..|+=|..+|---+. --|-|=.---
T Consensus 42 ~k~~~~~Eee~i~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~------G~DvlGAAkT 115 (758)
T KOG0343 42 KKKLRQQEEEEIEELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQ------GHDVLGAAKT 115 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCHHCC------CCCCCCCCCC
T ss_conf 4356553588999999999986434255687488766788767654875699998764142205------7500010235
Q ss_pred CCCHHHH----HHHHHHH---HHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 4324899----9999987---51127549998243665558999999860678983354106663025677775312257
Q gi|254780947|r 656 GFGKTEI----ALRAAFI---AVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQ 728 (1187)
Q Consensus 656 GfGKTEV----A~RAafk---av~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~ 728 (1187)
|-|||=- -+-+-+. .-.+|--+.|+.||-=||-|-|++...==+.-...-+++= .-++-+.-+ ..-..
T Consensus 116 GSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLii---GG~~~k~E~--eRi~~ 190 (758)
T KOG0343 116 GSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLII---GGKDVKFEL--ERISQ 190 (758)
T ss_pred CCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEE---CCCHHHHHH--HHHHC
T ss_conf 8884465439999999971778878832699565299999999999987520564311366---571268899--76625
Q ss_pred CEEEEEC-HHHHCC---C--CCCCCCCEEEEECHHHH-HHHHHHHH----HHCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 6089852-065427---8--52023656997222330-08889988----631678848999535340889999712225
Q gi|254780947|r 729 VDIVIGT-HALLNP---K--ITFANLGLIIIDEEQHF-GVKHKEAL----KETHTGVHVLTLSATPIPRTLQLAITGVRE 797 (1187)
Q Consensus 729 idiviGT-H~ll~~---~--v~f~~LgLliiDEEqrF-GV~~Ke~l----k~~~~~vdvLtlsATPIPRTL~msl~g~rd 797 (1187)
++|+|+| -||||. . ..-.+|-.||.||--|- -..-|+.| -.+-..--+|-.||||---+-.++-..++|
T Consensus 191 mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~d 270 (758)
T KOG0343 191 MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKD 270 (758)
T ss_pred CCEEEECHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 77699661789987541678787760478732088898776788899998737723304666325511399999753479
Q ss_pred C---CEE-----ECCCCCCCCEEEEEE-ECCH--HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 4---122-----015788775379998-5797--8989999989871885999826446928899999861654648886
Q gi|254780947|r 798 L---SLI-----SMPPINRIACRTSIS-IFDP--LVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMA 866 (1187)
Q Consensus 798 ~---S~i-----~tpP~~R~~v~T~v~-~~~~--~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~va 866 (1187)
- |+- +||-.=+ |+||+ +-.+ .++-.-|.--+.-.+=||+-.- .......+...+|-|..++--.
T Consensus 271 P~~vsvhe~a~~atP~~L~---Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~Ssc--Kqvkf~~e~F~rlrpg~~l~~L 345 (758)
T KOG0343 271 PVYVSVHENAVAATPSNLQ---QSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSC--KQVKFLYEAFCRLRPGIPLLAL 345 (758)
T ss_pred CCEEEEECCCCCCCHHHHH---HEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEHH--HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8579972353336836453---3279976014789999999845254369998600--6899999999850899832542
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCC---CCCCCCEEEEEECC
Q ss_conf 134674789999999963887579761020036332233266762502358860455322103---56767369999668
Q gi|254780947|r 867 HGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVG---RSKIASFALFLLPE 943 (1187)
Q Consensus 867 HGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVG---Rs~~~ayayl~~~~ 943 (1187)
||.|+.+.=-.|..+|...+.-||.||-|.--|||.|.+|-.|=.+.- .+.-+-=-||| |-+.++-|||+.-|
T Consensus 346 ~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCP----edv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343 346 HGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCP----EDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCCCCCCEEEEECCC----HHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 163137788999999987555589860255436898643369980682----0588999872122113677856899763
Q ss_pred C
Q ss_conf 8
Q gi|254780947|r 944 N 944 (1187)
Q Consensus 944 ~ 944 (1187)
.
T Consensus 422 s 422 (758)
T KOG0343 422 S 422 (758)
T ss_pred H
T ss_conf 1
No 74
>KOG0351 consensus
Probab=98.98 E-value=4.9e-06 Score=65.23 Aligned_cols=312 Identities=22% Similarity=0.258 Sum_probs=215.1
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 467898998488888-7448999999987605988541443166543248999999987511275499982436655589
Q gi|254780947|r 612 QDLYSQFIKRFPHVE-TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQH 690 (1187)
Q Consensus 612 ~~~~~eFe~~FpyeE-T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH 690 (1187)
++....|...|-+.- -|-|..||..++.-- |=+|-==-|+||-=-=-.-| +..+.=..|+-| +++-=+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gk------d~fvlmpTG~GKSLCYQlPA---~l~~gitvVISP--L~SLm~ 318 (941)
T KOG0351 250 KELELLLKEVFGHKGFRPNQLEAINATLSGK------DCFVLMPTGGGKSLCYQLPA---LLLGGVTVVISP--LISLMQ 318 (941)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC------CEEEEEECCCCEEEEEECCC---CCCCCCEEEECC--HHHHHH
T ss_conf 5889999998643558843999999997488------46999534886256766661---013893699633--899999
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCC--CCEEEEEC----------HHHHCCCCCCCCCCEEEEECHHH
Q ss_conf 9999986067898335410666302567777531225--76089852----------06542785202365699722233
Q gi|254780947|r 691 FRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEG--QVDIVIGT----------HALLNPKITFANLGLIIIDEEQH 758 (1187)
Q Consensus 691 ~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G--~idiviGT----------H~ll~~~v~f~~LgLliiDEEqr 758 (1187)
++.-.- ....|.-..|+--++..|+..|+..+++| .|+|+-=| ++.+..-..=+-|.|.+|||-|=
T Consensus 319 DQv~~L--~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351 319 DQVTHL--SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHHH--HHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCCCHHHHHHHCCCCCEEEEEEECHHHH
T ss_conf 999743--214854132356566888999999985788767899967788633321566787506787048887227887
Q ss_pred ---HH----H--HHHHHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHH
Q ss_conf ---00----8--8899886316788489995353408899--99712225412201578877537999857978989999
Q gi|254780947|r 759 ---FG----V--KHKEALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETL 827 (1187)
Q Consensus 759 ---FG----V--~~Ke~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai 827 (1187)
+| = ++=..+|.-..+|=++.||||-=||+-. +...|+|.-- +...-.||--.+-.|..-.....-..+
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCC-EECCCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 6642233347789999998527899768753002088999999982788863-222567998855999856675316889
Q ss_pred HHHHHH--CCE-EEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCC
Q ss_conf 989871--885-99982644692889999986165464888613467478999999996388757976102003633223
Q gi|254780947|r 828 MREYYR--GGQ-SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPK 904 (1187)
Q Consensus 828 ~rEl~R--gGQ-vf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~ 904 (1187)
..+..+ .+| .-+-|.+=.+-+.++..|+... .+-+.-|+=|++++=+.|-.+|+.+++.|-|+|-=--.|||-|.
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~--~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG--KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC--HHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
T ss_conf 8876512899983799688231999999998735--20575526788788899999985688708999852247877786
Q ss_pred CCEEEEECHHHCCCCHH----HHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 32667625023588604----55322103567673699996688
Q gi|254780947|r 905 ANTMIVQRADMFGLAQL----YQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 905 aNTiii~~ad~~GLaql----yQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
+--.| ||+|-.. ||==||-||-...+||-|+|...
T Consensus 554 VR~Vi-----H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351 554 VRFVI-----HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EEEEE-----ECCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHH
T ss_conf 35999-----7778614788887403367678800267742613
No 75
>KOG0348 consensus
Probab=98.96 E-value=3e-07 Score=74.62 Aligned_cols=322 Identities=24% Similarity=0.271 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH---H------HHCCCCEEE
Q ss_conf 8784678989984888-88744899999998760598854144316654324899999998---7------511275499
Q gi|254780947|r 609 MVSQDLYSQFIKRFPH-VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAF---I------AVMNGLQVA 678 (1187)
Q Consensus 609 ~~d~~~~~eFe~~Fpy-eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAaf---k------av~~gkQva 678 (1187)
.-++..-...+.-.-+ ..|.=|.+||-.++. --|-||----|-|||=--+=-.. . --.+|-=..
T Consensus 142 GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~------grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348 142 GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE------GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHC------CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 77779999998874557640676502035525------863478857788621799999999997268655556883489
Q ss_pred EEECHHHHHHHHHHHHHHHHCCCC--CCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC------HHHHCCCCCCCCCCE
Q ss_conf 982436655589999998606789--833541066630256777753122576089852------065427852023656
Q gi|254780947|r 679 VIAPTTLLVRQHFRLFSERFQGFS--VRIASISRFVQTKEAALHKKSITEGQVDIVIGT------HALLNPKITFANLGL 750 (1187)
Q Consensus 679 vlvPTTiLa~QH~~tf~~Rf~~~p--v~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT------H~ll~~~v~f~~LgL 750 (1187)
|+|||-=||.|-|+|...-..+|- |-=-++--=+.++|+..+.+| |.|+||| |-.=-+.+.|.+|--
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-----iNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-----INILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred EEECHHHHHHHHHHHHHHHHCCCEEEEECEEECCCCCCCHHHHHHCC-----CEEEECCCHHHHHHHHCCCHHEEEEEEE
T ss_conf 98041999999999999872574377302122363310178887548-----5489758427889874300221003568
Q ss_pred EEEECHHH-----HHHHHHHHHHHCCC--CC-----------CEEEEECCCCCHHHHHHHHCCCCCCEEE----------
Q ss_conf 99722233-----00888998863167--88-----------4899953534088999971222541220----------
Q gi|254780947|r 751 IIIDEEQH-----FGVKHKEALKETHT--GV-----------HVLTLSATPIPRTLQLAITGVRELSLIS---------- 802 (1187)
Q Consensus 751 liiDEEqr-----FGV~~Ke~lk~~~~--~v-----------dvLtlsATPIPRTL~msl~g~rd~S~i~---------- 802 (1187)
||.||--| |+-.-++-||.+.. |. --+-||||=----=.+|=+-+.|--.|.
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEECCHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCC
T ss_conf 98534367876243003999999875002001025566378776766655677788876331568556404301220386
Q ss_pred --------CCCCCCCCE----------EEEEE--ECC-----HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH----
Q ss_conf --------157887753----------79998--579-----7898999998987188599982644692889999----
Q gi|254780947|r 803 --------MPPINRIAC----------RTSIS--IFD-----PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTF---- 853 (1187)
Q Consensus 803 --------tpP~~R~~v----------~T~v~--~~~-----~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~---- 853 (1187)
-||+---++ +-|+. +.- -.+++.-+.+|..-.-=|||-+-.- .+.-...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~--VeFHy~lf~~~ 448 (708)
T KOG0348 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDS--VEFHYSLFSEA 448 (708)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEEECHHH--HHHHHHHHHHH
T ss_conf 3145663377534563201238687650068528741089999999998654442306999963257--89999999865
Q ss_pred ----------------HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC
Q ss_conf ----------------9861654648886134674789999999963887579761020036332233266762502358
Q gi|254780947|r 854 ----------------LQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG 917 (1187)
Q Consensus 854 ----------------l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G 917 (1187)
+-.+.-+.|+--.||-|+..+=-.+...|-+-+--||+||-..--|||.|++--+|=++|- |-
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P-~s 527 (708)
T KOG0348 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP-FS 527 (708)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCCEEEEECCC-CC
T ss_conf 40232366678666798103314637884274348899999875303544278850345426888776769982799-98
Q ss_pred CCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 860455322103567673699996688
Q gi|254780947|r 918 LAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 918 LaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
-+.--.==||-.|-++.+-|.|+.-|.
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~ 554 (708)
T KOG0348 528 TADYLHRVGRTARAGEKGEALLFLLPS 554 (708)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 899999840454346777157886651
No 76
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.91 E-value=1.8e-06 Score=68.69 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=177.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 8888744899999998760598854144316654324899999998751127--54999824366555899999986067
Q gi|254780947|r 623 PHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 623 pyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
....-+=|.+||..|-..++.+++ --||.==-|=|||-+|+=.+.+-..+| |-|-+||=.+-|+.|-++.|++ +.
T Consensus 414 ~i~lR~YQ~~AI~~v~~a~~~~~r-raLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~-~~- 490 (1126)
T PRK11448 414 ELGLRYYQEDAIQAVEKALANGQR-EILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKD-TK- 490 (1126)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-CC-
T ss_conf 777868899999999999980985-468872488858989999999999658767257985658999999998754-34-
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCC------CCCCCCCEEEEECHHHH----------
Q ss_conf 8983354106663025677775312257608985206-----54278------52023656997222330----------
Q gi|254780947|r 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPK------ITFANLGLIIIDEEQHF---------- 759 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~------v~f~~LgLliiDEEqrF---------- 759 (1187)
.+-.-.|.+.-..+..-..-.++.-.|+|.|=- ++..| +.| --|+||||=||=
T Consensus 491 ----~~~~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~--FDlIIiDEaHRgy~ld~em~e~ 564 (1126)
T PRK11448 491 ----IEGNQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQ--YDCIVVDEAHRGYTLDKEMTEG 564 (1126)
T ss_pred ----CCCCCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCC--CCEEEEECCCCCCCCCCCCCCC
T ss_conf ----5456664002200102567878777199973078998752357677999985--1379897787887433231100
Q ss_pred --H--------HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHC-----------CCCCCEEEC-CCCCCCCEEEEEE-
Q ss_conf --0--------8889988631678848999535340889999712-----------225412201-5788775379998-
Q gi|254780947|r 760 --G--------VKHKEALKETHTGVHVLTLSATPIPRTLQLAITG-----------VRELSLISM-PPINRIACRTSIS- 816 (1187)
Q Consensus 760 --G--------V~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g-----------~rd~S~i~t-pP~~R~~v~T~v~- 816 (1187)
+ -+-+.-|.-. +--.+-|||||-..|...= | +.|=-++.- || +-|.|-+.
T Consensus 565 e~~~rd~~s~~skyr~IldYF--DA~~iGLTATP~~~T~~~F--g~P~~~Ys~~eAV~DG~LVd~~~P---~~i~T~l~~ 637 (1126)
T PRK11448 565 ELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIF--GEPVYTYSYREAVIDGYLIDHEPP---IRIETKLAK 637 (1126)
T ss_pred HHCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCHHHHH--CCCCEEECHHHHHCCCCCCCCCCC---EEEEEEEEC
T ss_conf 010232024777899998762--1554047679995556770--997300058887304755688688---799756510
Q ss_pred -----------------------------------ECCHHHH----HHHHHHHH----HHC--CEEEEEECCCCCHHHHH
Q ss_conf -----------------------------------5797898----99999898----718--85999826446928899
Q gi|254780947|r 817 -----------------------------------IFDPLVV----RETLMREY----YRG--GQSFYVCPRLSDLEKCY 851 (1187)
Q Consensus 817 -----------------------------------~~~~~~i----~~ai~rEl----~Rg--GQvf~v~nrv~~i~~~~ 851 (1187)
.+|..++ -.+|.+++ .-+ |-.-.-+-.-..-+.++
T Consensus 638 ~Gi~~~~~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~HAd~Iv 717 (1126)
T PRK11448 638 EGIHFEKGEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCVTDAHADMVV 717 (1126)
T ss_pred CCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 46035876434420300000202558731337888827320383479999999998458899987699927869999999
Q ss_pred HHHHHHC----C---CCCEEEEECCCCHHHHHHHHHHHHCCCC-CEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHH
Q ss_conf 9998616----5---4648886134674789999999963887-579761020036332233266762502358860455
Q gi|254780947|r 852 TFLQSEV----P---ELKIAMAHGQMSPKNLEDKMNAFYEGQY-DVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQ 923 (1187)
Q Consensus 852 ~~l~~l~----p---~~~i~vaHGqm~~~~le~~m~~F~~~~~-dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQ 923 (1187)
..|++.+ | +.=+.+.+|+.+ .-+..+.+|-+.++ .|.|+--.+-||+|||..-.++--+-= .--.--.|
T Consensus 718 ~~l~e~F~~~y~~~~~~~~~~It~~~~--~~~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R~V-~S~i~F~Q 794 (1126)
T PRK11448 718 RLLKEAFKKKYGQVEDDAIIKITGDAD--KVQQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV-KSRILYEQ 794 (1126)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCC--CHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEC-CCHHHHHH
T ss_conf 999999886478767844899708884--478999972578998389985621047666420168876675-66778665
Q ss_pred HHHHCCCC
Q ss_conf 32210356
Q gi|254780947|r 924 LRGRVGRS 931 (1187)
Q Consensus 924 lrGRVGRs 931 (1187)
+.||=-|-
T Consensus 795 MiGRGTRl 802 (1126)
T PRK11448 795 MKGRATRL 802 (1126)
T ss_pred HHCCCCCC
T ss_conf 41675543
No 77
>KOG4284 consensus
Probab=98.85 E-value=8.5e-07 Score=71.11 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEE
Q ss_conf 88861346747899999999638875797610200363322332667
Q gi|254780947|r 863 IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI 909 (1187)
Q Consensus 863 i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTii 909 (1187)
+...-|-|+.++--.+|-..-+-..-|||+|-.---|||-||||-.|
T Consensus 299 ~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV 345 (980)
T KOG4284 299 VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV 345 (980)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCEEEEEEECCHHHCCCCCCCCCEEE
T ss_conf 17741411235788999874201689998523122267865553698
No 78
>KOG0332 consensus
Probab=98.83 E-value=2.1e-06 Score=68.14 Aligned_cols=287 Identities=21% Similarity=0.287 Sum_probs=187.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCC--------CEEEEEECHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 6654324899999998751127--------549998243665558999999860678-9833541066630256777753
Q gi|254780947|r 653 GDVGFGKTEIALRAAFIAVMNG--------LQVAVIAPTTLLVRQHFRLFSERFQGF-SVRIASISRFVQTKEAALHKKS 723 (1187)
Q Consensus 653 GDVGfGKTEVA~RAafkav~~g--------kQvavlvPTTiLa~QH~~tf~~Rf~~~-pv~i~~lsRf~~~~e~~~i~~~ 723 (1187)
---|-||| |||.-.|=. -|+.-|+||-=||.|--+.|.+ |..| .+++...=|=...+.-+.+.+
T Consensus 136 sqsGtGKT-----aaFvL~MLsRvd~~~~~PQ~iCLaPtrELA~Q~~eVv~e-MGKf~~ita~yair~sk~~rG~~l~e- 208 (477)
T KOG0332 136 SQSGTGKT-----AAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEE-MGKFTELTASYAIRGSKAKRGNKLTE- 208 (477)
T ss_pred HCCCCCHH-----HHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHH-HCCCEEEEEEEEECCCCCCCCCCCHH-
T ss_conf 01788605-----899999987348333587740547617779989899998-46701146899853764446773322-
Q ss_pred HCCCCCEEEEECHHHHC------CCCCCCCCCEEEEECH------HHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHH
Q ss_conf 12257608985206542------7852023656997222------3300888998863167-884899953534088999
Q gi|254780947|r 724 ITEGQVDIVIGTHALLN------PKITFANLGLIIIDEE------QHFGVKHKEALKETHT-GVHVLTLSATPIPRTLQL 790 (1187)
Q Consensus 724 l~~G~idiviGTH~ll~------~~v~f~~LgLliiDEE------qrFGV~~Ke~lk~~~~-~vdvLtlsATPIPRTL~m 790 (1187)
.|||||-.-+- |-+.-...-.++.||- |-||=. -=+|+..-+ +.-+|--|||=--+--+.
T Consensus 209 ------qIviGTPGtv~Dl~~klk~id~~kikvfVlDEAD~Mi~tqG~~D~-S~rI~~~lP~~~QllLFSATf~e~V~~F 281 (477)
T KOG0332 209 ------QIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQ-SIRIMRSLPRNQQLLLFSATFVEKVAAF 281 (477)
T ss_pred ------HEEECCCCCHHHHHHHHHHHCHHHCEEEEECCHHHHHHCCCCCCC-CHHHHHHCCCCCEEEEEECHHHHHHHHH
T ss_conf ------213179942899999987427666438885322555431366554-3104431687623776401037799999
Q ss_pred HHHCCCCCCEEE--CCCCCCCCEEEEEEECCHHHHHHHHHHHHH---HCCE-EEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 971222541220--157887753799985797898999998987---1885-9998264469288999998616546488
Q gi|254780947|r 791 AITGVRELSLIS--MPPINRIACRTSISIFDPLVVRETLMREYY---RGGQ-SFYVCPRLSDLEKCYTFLQSEVPELKIA 864 (1187)
Q Consensus 791 sl~g~rd~S~i~--tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~---RgGQ-vf~v~nrv~~i~~~~~~l~~l~p~~~i~ 864 (1187)
++.=++|=-+|. +--..=-+|+-|-+--...-=+-+..-+|. -=|| +.|+|-+ .+-...+..+++. .-.|.
T Consensus 282 a~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk-~ta~~l~~~m~~~--Gh~V~ 358 (477)
T KOG0332 282 ALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTK-ATAMWLYEEMRAE--GHQVS 358 (477)
T ss_pred HHHHCCCCCEEEEEHHHCCCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEEH-HHHHHHHHHHHHC--CCEEE
T ss_conf 99854898403656343064213431366555166799999987011110058999620-2699999999843--75367
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHH--CCC--CHHHHHH-HHCCCCCCCCEEEE
Q ss_conf 861346747899999999638875797610200363322332667625023--588--6045532-21035676736999
Q gi|254780947|r 865 MAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADM--FGL--AQLYQLR-GRVGRSKIASFALF 939 (1187)
Q Consensus 865 vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~--~GL--aqlyQlr-GRVGRs~~~ayayl 939 (1187)
+.||-|...+-.++|.+|-+|+..||+.|..+--|||++.+|-.|=+|--- =|= -+-|=-| ||-||-++++-|.=
T Consensus 359 ~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n 438 (477)
T KOG0332 359 LLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAIN 438 (477)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 85065306788999999865760699870111235653137999944776455789877889887023465665524898
Q ss_pred EECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9668888898899999999972
Q gi|254780947|r 940 LLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 940 ~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
++.... ...-+.+|+++
T Consensus 439 ~v~~~~-----s~~~mn~iq~~ 455 (477)
T KOG0332 439 LVDDKD-----SMNIMNKIQKH 455 (477)
T ss_pred EECCCC-----CHHHHHHHHHH
T ss_conf 641657-----58999999999
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.6e-06 Score=67.36 Aligned_cols=306 Identities=21% Similarity=0.282 Sum_probs=212.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 89899848888874489999999876059885414431665432489999999875112754999824366555899999
Q gi|254780947|r 615 YSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 615 ~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf 694 (1187)
+..+...|||+.-+=|.+||.-+-+|= -++||---|=|||=||-=|.+.|-.+|.-|....|+-=|..|-|.-|
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~e------sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGE------SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHCCC------CEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
T ss_conf 683787489896789999999984799------57997337898555999999999871894486163066420679999
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHC-----CCCCCCCCCEEEEECHHHH-----HHHHH
Q ss_conf 9860678983354106663025677775312257608985206542-----7852023656997222330-----08889
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN-----PKITFANLGLIIIDEEQHF-----GVKHK 764 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~-----~~v~f~~LgLliiDEEqrF-----GV~~K 764 (1187)
.++|.++-=.|+++.|=.+ =++...++|=|--+|. ..-.-.++--||.||=|=- ||---
T Consensus 183 ~~~fgdv~~~vGL~TGDv~-----------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 183 LAKFGDVADMVGLMTGDVS-----------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHHHHCCCEECCEE-----------ECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHH
T ss_conf 9986005654040105434-----------27999668860999999862586101353068887666504632212578
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHH--H--CCCCCCEEECCCCCCCCEEEEEEEC-------CHH--H-------HH
Q ss_conf 9886316788489995353408899997--1--2225412201578877537999857-------978--9-------89
Q gi|254780947|r 765 EALKETHTGVHVLTLSATPIPRTLQLAI--T--GVRELSLISMPPINRIACRTSISIF-------DPL--V-------VR 824 (1187)
Q Consensus 765 e~lk~~~~~vdvLtlsATPIPRTL~msl--~--g~rd~S~i~tpP~~R~~v~T~v~~~-------~~~--~-------i~ 824 (1187)
|-|..+-..|+..-|||| ||-|++.+- + -=++.-+|.|. ..--|-+-|+..- |+. . +.
T Consensus 252 E~Ii~lP~~v~~v~LSAT-v~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 252 EVIILLPDHVRFVFLSAT-VPNAEEFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHCCCCCEEEEEEC-CCCCCEEEEEECCCCEEEEECCCCCCHHHCCHHHH
T ss_conf 999866777768999678-8987999999974037874899506-88897179886587514535456530111343343
Q ss_pred HHHH------HHHHHCCEEEE------------EECC-------C---------------------------------CC
Q ss_conf 9999------89871885999------------8264-------4---------------------------------69
Q gi|254780947|r 825 ETLM------REYYRGGQSFY------------VCPR-------L---------------------------------SD 846 (1187)
Q Consensus 825 ~ai~------rEl~RgGQvf~------------v~nr-------v---------------------------------~~ 846 (1187)
..+. ++-.+|+|++| ...+ + +.
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred HHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCC
T ss_conf 34302200013567654321233334567766565530577766544037852899973651899998750364215882
Q ss_pred HHH-----HHHHHHHHCCCC----------------CEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCC
Q ss_conf 288-----999998616546----------------48886134674789999999963887579761020036332233
Q gi|254780947|r 847 LEK-----CYTFLQSEVPEL----------------KIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKA 905 (1187)
Q Consensus 847 i~~-----~~~~l~~l~p~~----------------~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~a 905 (1187)
=+. +.+.+.+|..+- -||+-|+-|=+..-|-|=.=|..|-.-|+.+|-----|+-+| |
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-a 488 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-A 488 (1041)
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCC-C
T ss_conf 788899999999853472021275009999998760345402450368999999998604305775333464015784-0
Q ss_pred CEEEEECHHHCC--------CCHHHHHHHHCCCCCCC--CEEEEE
Q ss_conf 266762502358--------86045532210356767--369999
Q gi|254780947|r 906 NTMIVQRADMFG--------LAQLYQLRGRVGRSKIA--SFALFL 940 (1187)
Q Consensus 906 NTiii~~ad~~G--------LaqlyQlrGRVGRs~~~--ayayl~ 940 (1187)
+|.+....-+|- =.+.+|+-||+||.+-- +-+-.+
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred CCEEEEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 013546557754885356581577775444301556546549995
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.78 E-value=4.1e-05 Score=58.18 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=32.8
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHH-HHC--CCC-EEEEECC-----HHHHHHHHHHHHHHCCC
Q ss_conf 88765148860898037652279999999-862--998-9999299-----89999999999985799
Q gi|254780947|r 7 IERISEKYCKKITLSPVIDGTEGFILAEI-ARL--GLS-LVYICSD-----ERILINLKKILTLVVPD 65 (1187)
Q Consensus 7 ~~~~~~k~~~~i~l~Gl~gs~~allla~l-~~~--~rp-ilvI~~d-----~~~A~~l~~dL~~f~~~ 65 (1187)
+-.++++ ..-+.+.|-+||+|+--+-++ ... +.. .+++|.= -.-|.++++++..=+++
T Consensus 82 i~~~i~~-nqVvii~GeTGsGKTTQiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~ 148 (1295)
T PRK11131 82 ILEAIRD-HQVVIVAGETGSGKTTQLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1295)
T ss_pred HHHHHHH-CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999997-996999768999878899999996279999989977965999999999999981999899
No 81
>KOG0347 consensus
Probab=98.72 E-value=3.9e-06 Score=65.98 Aligned_cols=249 Identities=22% Similarity=0.323 Sum_probs=170.3
Q ss_pred CCE--EEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH----HHHCCCC----
Q ss_conf 754--999824366555899999986067898335410666302567777531225760898520----6542785----
Q gi|254780947|r 674 GLQ--VAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH----ALLNPKI---- 743 (1187)
Q Consensus 674 gkQ--vavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH----~ll~~~v---- 743 (1187)
+.| .-|++||-=||-|--+-|..=-.--.++|..|--=-+...|..++.. .=||||.|- .|+.++-
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 5764038963709999999999998613467278875230579999999852----998799366289999975106664
Q ss_pred CCCCCCEEEEECHHHHHHH-HHHHH---------HHCCCCCCEEEEECCC---------------CCH-HH------HHH
Q ss_conf 2023656997222330088-89988---------6316788489995353---------------408-89------999
Q gi|254780947|r 744 TFANLGLIIIDEEQHFGVK-HKEAL---------KETHTGVHVLTLSATP---------------IPR-TL------QLA 791 (1187)
Q Consensus 744 ~f~~LgLliiDEEqrFGV~-~Ke~l---------k~~~~~vdvLtlsATP---------------IPR-TL------~ms 791 (1187)
+|+++--||+||--|.=-+ |=|-| ...+..--.|-.|||= +-| ++ -|.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred HHHHCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 23324078873477775511099999999986031105101258998776333217057765422114556679999999
Q ss_pred HHCCCCC------------------CEEECCCCCCC-CEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
Q ss_conf 7122254------------------12201578877-5379998579789899999898718859998264469288999
Q gi|254780947|r 792 ITGVREL------------------SLISMPPINRI-ACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYT 852 (1187)
Q Consensus 792 l~g~rd~------------------S~i~tpP~~R~-~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~ 852 (1187)
..|+|.= |.|+-||.++- -.--|++.| -|....-||-|+.+.+.+.
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---------------PGrTlVF~NsId~vKRLt~ 481 (731)
T KOG0347 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY---------------PGRTLVFCNSIDCVKRLTV 481 (731)
T ss_pred HHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC---------------CCCEEEEECHHHHHHHHHH
T ss_conf 8475689826766820447888887763588544540689988636---------------9835998411889999999
Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCC
Q ss_conf 9986165464888613467478999999996388757976102003633223326676250235886045532-210356
Q gi|254780947|r 853 FLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRS 931 (1187)
Q Consensus 853 ~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs 931 (1187)
.|..|= ..--..|.+|..++==+-...|-+..--||+||-.---|||||++--.|-+.--+ -|..|=-| ||-.|-
T Consensus 482 ~L~~L~--i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr--tseiYVHRSGRTARA 557 (731)
T KOG0347 482 LLNNLD--IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR--TSEIYVHRSGRTARA 557 (731)
T ss_pred HHHHCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCEEEEEECCC--CCCEEEECCCCCCCC
T ss_conf 974169--9971025778899998769987448881799623444258887863678960687--532467626653225
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 76736999966888
Q gi|254780947|r 932 KIASFALFLLPENR 945 (1187)
Q Consensus 932 ~~~ayayl~~~~~~ 945 (1187)
+..+-.-+++.|..
T Consensus 558 ~~~Gvsvml~~P~e 571 (731)
T KOG0347 558 NSEGVSVMLCGPQE 571 (731)
T ss_pred CCCCEEEEEECHHH
T ss_conf 67883799868177
No 82
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.70 E-value=6.3e-06 Score=64.43 Aligned_cols=376 Identities=18% Similarity=0.200 Sum_probs=253.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHHH
Q ss_conf 898998488888744899999998760598854144316654324899999998751-1275499982436655589999
Q gi|254780947|r 615 YSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV-MNGLQVAVIAPTTLLVRQHFRL 693 (1187)
Q Consensus 615 ~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav-~~gkQvavlvPTTiLa~QH~~t 693 (1187)
..++-..-|=.++-|++.. =++...- =+|||.-|-|||-=-=-.-.-+- ..+..++++=|--|=|.=--+.
T Consensus 42 ~~~~~~~LPv~~~~~~i~~------ai~~~~v--vii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~R 113 (845)
T COG1643 42 ILEYRSGLPVTAVRDEILK------AIEQNQV--VIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAER 113 (845)
T ss_pred HHHCCCCCCCHHHHHHHHH------HHHHCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 4322213981888999999------9986978--9986799887587889999960016687599658438999999999
Q ss_pred HHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHH------HHHHH-HH
Q ss_conf 9986067-8983354106663025677775312257608985206542785202365699722233------00888-99
Q gi|254780947|r 694 FSERFQG-FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQH------FGVKH-KE 765 (1187)
Q Consensus 694 f~~Rf~~-~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqr------FGV~~-Ke 765 (1187)
-.+.|.. .+=.|+..-||-+.--.+.-++-+-+|-. -|.++.|-.-.-.+.+||||=|- |+... |.
T Consensus 114 vAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiL------lrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~ 187 (845)
T COG1643 114 VAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGIL------LREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKD 187 (845)
T ss_pred HHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECCHHH------HHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 9998389867654379996226787714689514799------9998438020458779970133556888999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEE-C--C---HHHHHHHHHHHHH-HCCEEE
Q ss_conf 8863167884899953534088999971222541220157887753799985-7--9---7898999998987-188599
Q gi|254780947|r 766 ALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISI-F--D---PLVVRETLMREYY-RGGQSF 838 (1187)
Q Consensus 766 ~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~-~--~---~~~i~~ai~rEl~-RgGQvf 838 (1187)
-++.+|..+-++.||||==+-.+.--+.+ -.+|+ =|-..+||+++-.+ . | +.-|..+|..-+. -.|-++
T Consensus 188 ~~~~rr~DLKiIimSATld~~rfs~~f~~---apvi~-i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdIL 263 (845)
T COG1643 188 LLARRRDDLKLIIMSATLDAERFSAYFGN---APVIE-IEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSIL 263 (845)
T ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHCCC---CCEEE-ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98646887059997253588999976289---98787-558866447886577775136999999999996368999889
Q ss_pred EEECCCCCHHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEE-----
Q ss_conf 982644692889999986--1654648886134674789999999963887579761020036332233266762-----
Q gi|254780947|r 839 YVCPRLSDLEKCYTFLQS--EVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQ----- 911 (1187)
Q Consensus 839 ~v~nrv~~i~~~~~~l~~--l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~----- 911 (1187)
.--+-.+.|+++++.|++ +.+++.|.--||+|+..+-.+|..--..|+=-|-++|+|=||+|-||..---|=-
T Consensus 264 vFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~ 343 (845)
T COG1643 264 VFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKE 343 (845)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEECCEEEEEECCCCCC
T ss_conf 97786899999999997324478838940403599899986628788886049997514001311578589984882521
Q ss_pred --CHHHCCCCHHH----------HHHHHCCCCCCCCEEEEEECC-------CCCCCHHHHHHHHH-HHHHCCCCHH----
Q ss_conf --50235886045----------532210356767369999668-------88889889999999-9972556524----
Q gi|254780947|r 912 --RADMFGLAQLY----------QLRGRVGRSKIASFALFLLPE-------NRPLTAAAQKRLRI-LQSLNTLGAG---- 967 (1187)
Q Consensus 912 --~ad~~GLaqly----------QlrGRVGRs~~~ayayl~~~~-------~~~l~~~a~kRL~a-i~~~~~lGsG---- 967 (1187)
--.+-|++.|. |=.||-||- .-+-||=+|.. .....|..+.=|.. +.++..+|-|
T Consensus 344 ~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~ 422 (845)
T COG1643 344 KRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIA 422 (845)
T ss_pred CCCCCCCCCEEEEEEEECHHHHHHHCCCCCCC-CCCEEEEECCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 00351348526667875053233434554577-78528994479998736227991775335289999999669988876
Q ss_pred ------------HHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHH-HHHHHHHH
Q ss_conf ------------8999999851163000461--115538983389999-99999999
Q gi|254780947|r 968 ------------FQLASYDLDIRGTGNLLGE--EQSGHIREIGFELYQ-KMLEETVA 1009 (1187)
Q Consensus 968 ------------f~iA~~DleiRGaG~llG~--~QsG~i~~vG~~ly~-~ml~~av~ 1009 (1187)
+.-|..-|.-=||=+.=|. ++.=+|..++.+.=. +||-.|..
T Consensus 423 ~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 423 PFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 686778997589999999999748868888777889999868998388899885124
No 83
>KOG0334 consensus
Probab=98.67 E-value=4e-06 Score=65.89 Aligned_cols=302 Identities=20% Similarity=0.251 Sum_probs=186.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH-------------HHHCCCCEEEEEECHHHHHHHHH
Q ss_conf 88744899999998760598854144316654324899999998-------------75112754999824366555899
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAF-------------IAVMNGLQVAVIAPTTLLVRQHF 691 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAaf-------------kav~~gkQvavlvPTTiLa~QH~ 691 (1187)
-+||=|..||-.|.. + =|=+..+--|-||| .|| ..+.+|-=..+|+||-=||.|-+
T Consensus 387 k~~~IQ~qAiP~Ims----G--rdvIgvakTgSGKT-----~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~ 455 (997)
T KOG0334 387 KPTPIQAQAIPAIMS----G--RDVIGVAKTGSGKT-----LAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIH 455 (997)
T ss_pred CCCCHHHHHCCHHCC----C--CCEEEEECCCCCCC-----HHHHHHHHHHHCCCCCHHCCCCCEEEEECCCHHHHHHHH
T ss_conf 987556643012225----7--74587732688620-----344211555420479711078864799737778999999
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH-----HHCCCCCCCCCC---EEEEECHHHHHHHH
Q ss_conf 9999860678983354106663025677775312257608985206-----542785202365---69972223300888
Q gi|254780947|r 692 RLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA-----LLNPKITFANLG---LIIIDEEQHFGVKH 763 (1187)
Q Consensus 692 ~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~-----ll~~~v~f~~Lg---LliiDEEqrFGV~~ 763 (1187)
+-.+.=.....+++... .+-..+++-+..|+.| .+|+|+|-- |.-..-..-||- -|+.||--|-=++-
T Consensus 456 r~~~kf~k~l~ir~v~v---ygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmg 531 (997)
T KOG0334 456 REVRKFLKLLGIRVVCV---YGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMG 531 (997)
T ss_pred HHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHCC-CCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHCC
T ss_conf 99999877417627984---2785188789998678-9659964503233666157762331011035541123544004
Q ss_pred HH-----HHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEE----------------E-CCHH
Q ss_conf 99-----886316788489995353408899997122254122015788775379998----------------5-7978
Q gi|254780947|r 764 KE-----ALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSIS----------------I-FDPL 821 (1187)
Q Consensus 764 Ke-----~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~----------------~-~~~~ 821 (1187)
.| -|+.+++.=-+ +|++---||.+ +++ +-+=.. .||.--|. . -++.
T Consensus 532 fePq~~~Ii~nlrpdrQt-vlfSatfpr~m-~~l---------a~~vl~-~Pveiiv~~~svV~k~V~q~v~V~~~e~eK 599 (997)
T KOG0334 532 FEPQITRILQNLRPDRQT-VLFSATFPRSM-EAL---------ARKVLK-KPVEIIVGGRSVVCKEVTQVVRVCAIENEK 599 (997)
T ss_pred CCCCCEEHHHHCCHHHHH-HHHHHHHHHHH-HHH---------HHHHHC-CCEEEEECCCEEEECCEEEEEEEECCCHHH
T ss_conf 575404097646603543-45662206999-999---------988615-880899746305742404899981483677
Q ss_pred HH-HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCC
Q ss_conf 98-99999898718859998264469288999998616546488861346747899999999638875797610200363
Q gi|254780947|r 822 VV-RETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL 900 (1187)
Q Consensus 822 ~i-~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGl 900 (1187)
.. -.++..|..-.|-+-..+-+=+..+.+...|++ .+-.-.. +||--+..+=+.+..+|-++..++||||..+--||
T Consensus 600 f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-ag~~~~s-lHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334 600 FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQK-AGYNCDS-LHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-CCCCHHH-HCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHCCC
T ss_conf 999999999886248879998471478899999985-6860543-05787567788589997456742898514542676
Q ss_pred CCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 3223326676250235886045532210356767369999668888898899999999
Q gi|254780947|r 901 DLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRIL 958 (1187)
Q Consensus 901 Dip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai 958 (1187)
|++.---.|.+++-. +-.++-.==||-||..|.+|||-++.++. .+-|-.=-+|+
T Consensus 678 dv~~l~Lvvnyd~pn-h~edyvhR~gRTgragrkg~AvtFi~p~q--~~~a~dl~~al 732 (997)
T KOG0334 678 DVKELILVVNYDFPN-HYEDYVHRVGRTGRAGRKGAAVTFITPDQ--LKYAGDLCKAL 732 (997)
T ss_pred CCCCEEEEEECCCCH-HHHHHHHHHCCCCCCCCCCEEEEEECHHH--HHHHHHHHHHH
T ss_conf 665405899736631-27999998513566777633799857788--64378899999
No 84
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=98.63 E-value=3.4e-05 Score=58.79 Aligned_cols=330 Identities=21% Similarity=0.275 Sum_probs=256.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHH-HHHHHHHHHHHHHHCCCCCCE
Q ss_conf 7448999999987605988541443166543248999999987511275499982436-655589999998606789833
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTT-LLVRQHFRLFSERFQGFSVRI 705 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTT-iLa~QH~~tf~~Rf~~~pv~i 705 (1187)
-|-|+++|+.|++.= -|-||.==-|+||- |===+-|+..++=..|++|=- +...| ...+....|.-
T Consensus 13 rp~Q~e~I~~~L~g~-----RD~~vvMpTG~GKS---LCYQ~Pa~~~~G~t~VIsPLiSLm~DQ-----V~~L~~~~i~A 79 (497)
T TIGR00614 13 RPVQLEVINAVLEGR-----RDCLVVMPTGGGKS---LCYQLPALYSDGLTLVISPLISLMEDQ-----VLQLKASGIPA 79 (497)
T ss_pred CHHHHHHHHHHHCCC-----CCEEEEECCCCCHH---HHHHHHHHHCCCCEEEECCHHHHHHHH-----HHHHHHCCCCE
T ss_conf 514899999875489-----75699815898603---676405675089649973636568999-----99987448630
Q ss_pred EEECCCCCCHHHHHHHHHH--CCCCCEEEEEC-------HHHHCCC---CCCCCCCEEEEECHH---------HHHHHHH
Q ss_conf 5410666302567777531--22576089852-------0654278---520236569972223---------3008889
Q gi|254780947|r 706 ASISRFVQTKEAALHKKSI--TEGQVDIVIGT-------HALLNPK---ITFANLGLIIIDEEQ---------HFGVKHK 764 (1187)
Q Consensus 706 ~~lsRf~~~~e~~~i~~~l--~~G~idiviGT-------H~ll~~~---v~f~~LgLliiDEEq---------rFGV~~K 764 (1187)
.+|+--+|..++++|..++ ++|++-+|==| .+|||+= -+-..+-|+.|||=| |=-=+.=
T Consensus 80 ~~L~s~~s~~~~~~v~~~~~~k~g~~kllYvtPE~~~~~~~ll~~Le~~Y~~~~~~~iAvDEAHCiSqWGHDFR~~Y~~L 159 (497)
T TIGR00614 80 TFLNSSQSKEQQKEVLTDLSKKDGKLKLLYVTPEKISKSKSLLQTLEKLYERKGITLIAVDEAHCISQWGHDFRPDYKAL 159 (497)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHHHHHHHCCCEEEEEECEEEECCCCCCCCHHHHHH
T ss_conf 10443257789999999987307975899716346534647899999988644966999832154358888740799996
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECC--HHHHHHHHHHHHH--------
Q ss_conf 9886316788489995353408899--997122254122015788775379998579--7898999998987--------
Q gi|254780947|r 765 EALKETHTGVHVLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFD--PLVVRETLMREYY-------- 832 (1187)
Q Consensus 765 e~lk~~~~~vdvLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~--~~~i~~ai~rEl~-------- 832 (1187)
-.||...++|-|..||||-=|+|.+ +...+|++.- +.+---||--++=.|.+.. +.-+-+-+.+=+.
T Consensus 160 G~Lk~~fP~vP~~ALTATA~~~~~~Di~~~L~l~~p~-~~~~SFdRPNl~y~v~~K~~n~~~~~~dl~~f~~~~~~s~~~ 238 (497)
T TIGR00614 160 GSLKQKFPNVPIMALTATASPSVREDILRILNLKNPQ-VFITSFDRPNLYYEVRRKTSNTKKILEDLLRFIVKKASSAWE 238 (497)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC-EEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5788854887436434057867899999872213662-464046687630340057897025899999998752035652
Q ss_pred HCCEE-EEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH-CCCCCEEEECCCEECCCCCCCCCEEEE
Q ss_conf 18859-9982644692889999986165464888613467478999999996-388757976102003633223326676
Q gi|254780947|r 833 RGGQS-FYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFY-EGQYDVLLSTSIVESGLDLPKANTMIV 910 (1187)
Q Consensus 833 RgGQv-f~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~-~~~~dvLv~TtIiEsGlDip~aNTiii 910 (1187)
=.|+. -.=||-=..-|.++..|+++= ..=+-=|.-|...+=++|=.+|. .-++.|.|+|-==-.|||=||+--.|=
T Consensus 239 ~~G~sGIIYC~SR~~~e~~a~~L~~~G--~~a~aYHAGl~~~~R~~V~~~f~nrD~~QvVvATvAFGMGInKpdvRfViH 316 (497)
T TIGR00614 239 FKGKSGIIYCPSRKKSEQVAAELQKLG--IAAGAYHAGLEISARKEVQHKFQNRDEIQVVVATVAFGMGINKPDVRFVIH 316 (497)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCC--CEEEHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEE
T ss_conf 458830275287234899999997558--610024026886477899998750388579998721268887635367885
Q ss_pred ECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 25023588604553221035676736999966888889889999999997255652489999998511630004611155
Q gi|254780947|r 911 QRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSG 990 (1187)
Q Consensus 911 ~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~DleiRGaG~llG~~QsG 990 (1187)
.++-+ -.=-=||=-||=||-+-+|-|-|+|.+.. . .|++ .+|.++..|
T Consensus 317 ~~~Pk-~~EsYYQE~GRAGRDgl~s~c~lfy~~aD----~--~~~~-------------------------~~l~e~~~~ 364 (497)
T TIGR00614 317 YSLPK-SMESYYQESGRAGRDGLPSECVLFYAPAD----I--ARLR-------------------------RLLVEEPDG 364 (497)
T ss_pred ECCCC-CCCCCCCCCCCCCCCCCCCCEEEEECHHH----H--HHHH-------------------------HHHEECCCC
T ss_conf 07885-62110135555678973201023304356----9--9998-------------------------874004577
Q ss_pred C---HHHHHHHHHHHHH
Q ss_conf 3---8983389999999
Q gi|254780947|r 991 H---IREIGFELYQKML 1004 (1187)
Q Consensus 991 ~---i~~vG~~ly~~ml 1004 (1187)
. -..+--.||..|=
T Consensus 365 ~~ht~~~~~~~~~~~~~ 381 (497)
T TIGR00614 365 KYHTQRTYKLKLLEKVE 381 (497)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 51578999999999999
No 85
>KOG0336 consensus
Probab=98.52 E-value=5.9e-05 Score=56.92 Aligned_cols=325 Identities=20% Similarity=0.253 Sum_probs=205.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC------------CEEEECCCCCCHHHHHHHHHHHHHC---------CC
Q ss_conf 98998488888744899999998760598854------------1443166543248999999987511---------27
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDLSSGRLM------------DRLICGDVGFGKTEIALRAAFIAVM---------NG 674 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PM------------DRLiCGDVGfGKTEVA~RAafkav~---------~g 674 (1187)
-.|++.|. .-||=+.-|. |.-.++|.|. |-.-.---|-|||=--++-+|.-.. .|
T Consensus 219 ctFddAFq--~~pevmenIk--K~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336 219 CTFDDAFQ--CYPEVMENIK--KTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCHHHHHH--HHHHHHHHHH--HCCCCCCCCCHHCCCCEEECCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHCCCC
T ss_conf 74787875--6599999999--6068889853202332011376447787448984778750540145146111203689
Q ss_pred CEEEEEECHHHHHHHH-HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHC-----CCCCCCCC
Q ss_conf 5499982436655589-99999860678983354106663025677775312257608985206542-----78520236
Q gi|254780947|r 675 LQVAVIAPTTLLVRQH-FRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN-----PKITFANL 748 (1187)
Q Consensus 675 kQvavlvPTTiLa~QH-~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~-----~~v~f~~L 748 (1187)
--|.||.||-=||.|- -+.-+.++.++ +.|++-+- ....+-+++|+.| ++|+|-|-+=|. .-|..+..
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~-ksvc~ygg----gnR~eqie~lkrg-veiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336 295 PGVLVLTPTRELALQIEGEVKKYSYNGL-KSVCVYGG----GNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCC-CEEEEECC----CCCHHHHHHHHCC-CEEEEECCCHHHHHHHCCEEEEEEE
T ss_conf 8549983338889988767767643584-32887548----7854689987457-4177607851765553172001125
Q ss_pred CEEEEECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCC---CCEEEE-EEECC
Q ss_conf 5699722233-----00888998863167884899953534088999971222541220157887---753799-98579
Q gi|254780947|r 749 GLIIIDEEQH-----FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINR---IACRTS-ISIFD 819 (1187)
Q Consensus 749 gLliiDEEqr-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R---~~v~T~-v~~~~ 819 (1187)
--|++||--| |-+.-.--|-..|+.--+..-|||==|---.++.+=+++--+.----.|= ..|+-+ +++.|
T Consensus 369 TYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d 448 (629)
T KOG0336 369 TYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTD 448 (629)
T ss_pred EEEEECCHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCEEEEEEEEEEEEECCC
T ss_conf 88986126666445662888988652277622553105586689999998640854999614343554101025884361
Q ss_pred HHHHHHHHHHHHHHCCE----EEEEECCCCCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 78989999989871885----9998264469288999998616--54648886134674789999999963887579761
Q gi|254780947|r 820 PLVVRETLMREYYRGGQ----SFYVCPRLSDLEKCYTFLQSEV--PELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLST 893 (1187)
Q Consensus 820 ~~~i~~ai~rEl~RgGQ----vf~v~nrv~~i~~~~~~l~~l~--p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~T 893 (1187)
..- .+.+.-=+.--+| +.||-- ..+|.+|..-+ -.....-.||--...+-|....+|-.|+..|||+|
T Consensus 449 ~~k-~~~~~~f~~~ms~ndKvIiFv~~-----K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT 522 (629)
T KOG0336 449 SEK-LEIVQFFVANMSSNDKVIIFVSR-----KVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVAT 522 (629)
T ss_pred HHH-HHHHHHHHHHCCCCCEEEEEEEC-----HHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 899-99999999855888618999831-----032210231021146101102587224359999976415816999972
Q ss_pred CCEECCCCCCCCCEEEEECHHHCCCCHHHHH-HHHCCCCCCCCEEEEEE-CCCCCCCHHHHHHHHHHHHH
Q ss_conf 0200363322332667625023588604553-22103567673699996-68888898899999999972
Q gi|254780947|r 894 SIVESGLDLPKANTMIVQRADMFGLAQLYQL-RGRVGRSKIASFALFLL-PENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 894 tIiEsGlDip~aNTiii~~ad~~GLaqlyQl-rGRVGRs~~~ayayl~~-~~~~~l~~~a~kRL~ai~~~ 961 (1187)
-+.--|||+|...-.+=++--+ =-.-|-- =||.||..|++-+--+. ..+ ...|..=++.+++-
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~--nIeeYVHRvGrtGRaGr~G~sis~lt~~D---~~~a~eLI~ILe~a 587 (629)
T KOG0336 523 DLASRGLDVPDITHVYNYDFPR--NIEEYVHRVGRTGRAGRTGTSISFLTRND---WSMAEELIQILERA 587 (629)
T ss_pred CHHHCCCCCHHCCEEECCCCCC--CHHHHHHHHCCCCCCCCCCCEEEEEEHHH---HHHHHHHHHHHHHH
T ss_conf 2343378820020354057875--59999987123565777763278886304---77799999999986
No 86
>KOG0344 consensus
Probab=98.50 E-value=3.5e-08 Score=81.82 Aligned_cols=227 Identities=14% Similarity=0.087 Sum_probs=157.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCC----CCEEEECCCCCCHHHHHHHH
Q ss_conf 41443166543248999999987511275499982436655589999998606789----83354106663025677775
Q gi|254780947|r 647 MDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFS----VRIASISRFVQTKEAALHKK 722 (1187)
Q Consensus 647 MDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~p----v~i~~lsRf~~~~e~~~i~~ 722 (1187)
|+++--++|+-||+++++=|---.|.+| +.|++++.=||++.-++=|...| ++|+++-+=++.++..++++
T Consensus 358 ~~~V~QelvF~gse~~K~lA~rq~v~~g-----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344 358 NETVDQELVFCGSEKGKLLALRQLVASG-----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred HHHHHHHHEEEECCHHHHHHHHHHHHCC-----CCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 6554555121104345778899998615-----89974898853888999999864235766346763666667789999
Q ss_pred HHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 31225760898520654278520236569972223300888998863167884899953534088999971222541220
Q gi|254780947|r 723 SITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLIS 802 (1187)
Q Consensus 723 ~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~ 802 (1187)
+++.|+|+++|-|- +|+..+.|++-+|+|.+-=+.+++..=-++ - .|++|+++-.-
T Consensus 433 ~FR~g~IwvLicTd-ll~RGiDf~gvn~VInyD~p~s~~syihrI-G---------RtgRag~~g~A------------- 488 (593)
T KOG0344 433 RFRIGKIWVLICTD-LLARGIDFKGVNLVINYDFPQSDLSYIHRI-G---------RTGRAGRSGKA------------- 488 (593)
T ss_pred HHHCCCEEEEEEHH-HHHCCCCCCCCCEEEECCCCCHHHHHHHHH-H---------CCCCCCCCCCE-------------
T ss_conf 98506706888504-665455645763689537872247888873-0---------25788988616-------------
Q ss_pred CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH----HHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 15788775379998579789899999898718859998264469288999----99861654648886134674789999
Q gi|254780947|r 803 MPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYT----FLQSEVPELKIAMAHGQMSPKNLEDK 878 (1187)
Q Consensus 803 tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~----~l~~l~p~~~i~vaHGqm~~~~le~~ 878 (1187)
-||-+.-|-..|+--..-=..-|.+|= +-+-.|..+.. .+.+-.| .|-.+.-=.-+.---+..
T Consensus 489 ---------itfytd~d~~~ir~iae~~~~sG~evp---e~~m~~~k~~~~~kk~~~k~~~-~r~~I~t~~~p~~~~k~~ 555 (593)
T KOG0344 489 ---------ITFYTDQDMPRIRSIAEVMEQSGCEVP---EKIMGIKKLSRLKKKKLLKAAS-KREEISTKKFPKYKKKEA 555 (593)
T ss_pred ---------EEEECCCCCHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHH
T ss_conf ---------998632553455568999997188633---9998656666555555431554-210014412455306788
Q ss_pred HHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCC
Q ss_conf 999963887579761020036332233266762502358
Q gi|254780947|r 879 MNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG 917 (1187)
Q Consensus 879 m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~G 917 (1187)
..+|-.++-+++ +|.+|+|.+-+-+--+-+.++.+||
T Consensus 556 ~~k~~~~ek~~~--~~~~~~~~k~~~~~~~~~~~~~~~~ 592 (593)
T KOG0344 556 LEKAKSQEKKIL--KQETEIAVKKEGKIKKKVENKENFG 592 (593)
T ss_pred HHHHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 888776778888--8876640255202577888665127
No 87
>KOG0352 consensus
Probab=98.44 E-value=0.00017 Score=53.42 Aligned_cols=290 Identities=20% Similarity=0.248 Sum_probs=198.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 87448999999987605988541443166543248999999987511275499982436655589999998606789833
Q gi|254780947|r 626 ETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRI 705 (1187)
Q Consensus 626 ET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i 705 (1187)
-||=|.+||..|-. +--|--||=--|-||.=-- -.-|.+++-=..|+-|---|-+-. .+-+...-|.+
T Consensus 21 Ks~LQE~A~~c~VK-----~k~DVyVsMPTGaGKSLCy---QLPaL~~~gITIV~SPLiALIkDQ----iDHL~~LKVp~ 88 (641)
T KOG0352 21 KSRLQEQAINCIVK-----RKCDVYVSMPTGAGKSLCY---QLPALVHGGITIVISPLIALIKDQ----IDHLKRLKVPC 88 (641)
T ss_pred CCHHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHH---HCHHHHHCCEEEEECHHHHHHHHH----HHHHHHHCCCH
T ss_conf 37578998999883-----4673799646887601454---265877288189930789999999----87787405616
Q ss_pred EEECCCCCCHHHHHHHHHHCCCC--CEEEEEC---------HHHHCCCCCCCCCCEEEEECHHHHHHHHH----------
Q ss_conf 54106663025677775312257--6089852---------06542785202365699722233008889----------
Q gi|254780947|r 706 ASISRFVQTKEAALHKKSITEGQ--VDIVIGT---------HALLNPKITFANLGLIIIDEEQHFGVKHK---------- 764 (1187)
Q Consensus 706 ~~lsRf~~~~e~~~i~~~l~~G~--idiviGT---------H~ll~~~v~f~~LgLliiDEEqrFGV~~K---------- 764 (1187)
+.|+-=-|++|.++++.+|+.-+ +-++-=| ..||+.=++-.-|.-++|||-|- |.|=
T Consensus 89 ~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC--VSQWGHDFRPDYL~ 166 (641)
T KOG0352 89 ESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC--VSQWGHDFRPDYLT 166 (641)
T ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHH--HHHHCCCCCCCHHH
T ss_conf 6640121078899998888743775148997631555666899999887414022477334666--77626666820444
Q ss_pred -HHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEE------CCHHHHHHHHHH--------
Q ss_conf -98863167884899953534088999971222541220157887753799985------797898999998--------
Q gi|254780947|r 765 -EALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISI------FDPLVVRETLMR-------- 829 (1187)
Q Consensus 765 -e~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~------~~~~~i~~ai~r-------- 829 (1187)
-.|+.....|-.+.||||--|---.=-.--+| =|.||--|-++ |-+...++-|..
T Consensus 167 LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~----------L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF 236 (641)
T KOG0352 167 LGSLRSVCPGVPWVALTATANAKVQEDIAFQLK----------LRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADF 236 (641)
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH----------CCCCHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 666774469996698543467767799999976----------0585444057414544457888887641377789999
Q ss_pred ---HHH------------HCCEEEEEECCC-CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf ---987------------188599982644-6928899999861654648886134674789999999963887579761
Q gi|254780947|r 830 ---EYY------------RGGQSFYVCPRL-SDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLST 893 (1187)
Q Consensus 830 ---El~------------RgGQvf~v~nrv-~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~T 893 (1187)
-|. ||--+ ||-|. +.-|++|-.|..-= ..-.--|.-+...|-..|-.+.++++..|.++|
T Consensus 237 ~~~~LG~~~~~~~~~K~~~GCGI--VYCRTR~~cEq~AI~l~~~G--i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352 237 SSSNLGKHEKASQNKKTFTGCGI--VYCRTRNECEQVAIMLEIAG--IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred HHHHCCCCHHHHCCCCCCCCCEE--EEECCHHHHHHHHHHHHHCC--CCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 99862890444117877777327--99602889998988753247--626776500141126889999862788779996
Q ss_pred CCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 020036332233266762502358860455322103567673699996688
Q gi|254780947|r 894 SIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 894 tIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
.=--.|+|-||+--.|-.+--. .+|--||=-||-||-+.+.||-|.|...
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~q-n~AgYYQESGRAGRDGk~SyCRLYYsR~ 362 (641)
T KOG0352 313 VSFGMGVDKPDVRFVIHWSPSQ-NLAGYYQESGRAGRDGKRSYCRLYYSRQ 362 (641)
T ss_pred ECCCCCCCCCCEEEEEECCHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCC
T ss_conf 0244466877615999517056-5789988615356677725201333214
No 88
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=98.37 E-value=1.1e-05 Score=62.53 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 899999998760598854144316654324899999998751----1275499982436655589999998606789833
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV----MNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRI 705 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav----~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i 705 (1187)
|..+++=... +++. .---++|=|.|-|||=-++ |...+. ...+-+-|+||.+++.+ =-+.+...+.+..+.+
T Consensus 2 Q~~gv~wl~~-~~~~-~~ggiLaDeMGLGKTiq~i-a~l~~~~~~~~~~~~~LIV~P~sl~~~-W~~Ei~~~~~~~~~~~ 77 (295)
T pfam00176 2 QLEGVNWLIS-LYNN-GLGGILADEMGLGKTLQTI-SLLAYLKELKPLAGPHLVVCPLSTLDN-WLNEFEKWAPDLNIVV 77 (295)
T ss_pred HHHHHHHHHH-HHHC-CCCEEEECCCCCCHHHHHH-HHHHHHHHHCCCCCCEEEEECHHHHHH-HHHHHHHHCCCCCEEE
T ss_conf 7889999999-8727-9998972278757999999-999999983889998899975788876-7889998679970799
Q ss_pred EEECCCCCCHHHH-HHHHHHCCCCCEEEEECHHHHCCCCC-CCC--CCEEEEECHHHH---HHHHHHHHHHCCCCCCEEE
Q ss_conf 5410666302567-77753122576089852065427852-023--656997222330---0888998863167884899
Q gi|254780947|r 706 ASISRFVQTKEAA-LHKKSITEGQVDIVIGTHALLNPKIT-FAN--LGLIIIDEEQHF---GVKHKEALKETHTGVHVLT 778 (1187)
Q Consensus 706 ~~lsRf~~~~e~~-~i~~~l~~G~idiviGTH~ll~~~v~-f~~--LgLliiDEEqrF---GV~~Ke~lk~~~~~vdvLt 778 (1187)
-..+ .+... .+.+-+..+..||||-|=-.+.++.. +.+ -..+|+||-|++ .-+.-..++++++. ..+.
T Consensus 78 ~~~~----~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~~~~w~~vI~DEaH~iKN~~s~~~~a~~~l~~~-~r~~ 152 (295)
T pfam00176 78 YYGD----GDSRSELLRNVLRTGKFDVLITSYEYIRRDKDELHKANWRYVILDEGHRIKNAKSKLSLALKSLKTN-NRLL 152 (295)
T ss_pred EEEC----HHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-CEEE
T ss_conf 9847----0768999886774168859993099999759998408765899876201258788999999952358-1899
Q ss_pred EECCCCCHHHH
Q ss_conf 95353408899
Q gi|254780947|r 779 LSATPIPRTLQ 789 (1187)
Q Consensus 779 lsATPIPRTL~ 789 (1187)
||+|||.-.+.
T Consensus 153 LTGTPiqN~l~ 163 (295)
T pfam00176 153 LTGTPIQNNLA 163 (295)
T ss_pred EECCCCCCCHH
T ss_conf 86874558889
No 89
>KOG0346 consensus
Probab=98.32 E-value=0.00024 Score=52.29 Aligned_cols=298 Identities=21% Similarity=0.323 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH------HHHHHHHCCCC---EEEEEECHHHHHHHHHHHHHH
Q ss_conf 874489999999876059885414431665432489999------99987511275---499982436655589999998
Q gi|254780947|r 626 ETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIAL------RAAFIAVMNGL---QVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 626 ET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~------RAafkav~~gk---QvavlvPTTiLa~QH~~tf~~ 696 (1187)
.|-=|.+||-=.+ |.- |=+.----|-|||---+ =-+-|.+.++. -..|||||-=||||-|+-+..
T Consensus 42 pTlIQs~aIplaL---EgK---DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viek 115 (569)
T KOG0346 42 PTLIQSSAIPLAL---EGK---DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEK 115 (569)
T ss_pred CCHHHHCCCCHHH---CCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 6234432212432---486---3146522688713788999999999764036432463069992509999999999999
Q ss_pred HHCCCC--CCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH----HHCCCC--CCCCCCEEEEECHH---HHHHHHHH
Q ss_conf 606789--83354106663025677775312257608985206----542785--20236569972223---30088899
Q gi|254780947|r 697 RFQGFS--VRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA----LLNPKI--TFANLGLIIIDEEQ---HFGVKHKE 765 (1187)
Q Consensus 697 Rf~~~p--v~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~----ll~~~v--~f~~LgLliiDEEq---rFGV~~Ke 765 (1187)
--.--+ +++.-++---+...+. -+-.+.-||||||-. .++-++ -...|-.|++||-- -||-. |
T Consensus 116 L~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYe--e 189 (569)
T KOG0346 116 LVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYE--E 189 (569)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHH----HHHCCCCCEEEECHHHHHHHHHHCCCHHHHHEEEEEECHHHHHHHCCCH--H
T ss_conf 999878765554210331167778----8870599758717188999986063021201025785035666423608--8
Q ss_pred HHHHCCC----CCCEEEEECCCCCHHHHHHHHCCCCC----CEE------ECCCCCCCC-EEEEEEECCHHHHHHHHHH-
Q ss_conf 8863167----88489995353408899997122254----122------015788775-3799985797898999998-
Q gi|254780947|r 766 ALKETHT----GVHVLTLSATPIPRTLQLAITGVREL----SLI------SMPPINRIA-CRTSISIFDPLVVRETLMR- 829 (1187)
Q Consensus 766 ~lk~~~~----~vdvLtlsATPIPRTL~msl~g~rd~----S~i------~tpP~~R~~-v~T~v~~~~~~~i~~ai~r- 829 (1187)
-+|++.. ..-.+-|||| |+--+.-++.+ .+| +-|+++-+. -+.-..+.|.-++--|+..
T Consensus 190 dlk~l~~~LPr~~Q~~LmSAT-----l~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL 264 (569)
T KOG0346 190 DLKKLRSHLPRIYQCFLMSAT-----LSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKL 264 (569)
T ss_pred HHHHHHHHCCCHHHHEEEHHH-----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 899998748825650200313-----556799999975169768983266689845225899970353068899999999
Q ss_pred HHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-------C-------
Q ss_conf 98718859998264469288999998616546488861346747899999999638875797610-------2-------
Q gi|254780947|r 830 EYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTS-------I------- 895 (1187)
Q Consensus 830 El~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~Tt-------I------- 895 (1187)
+|-||--..|| |.|..-++..-.|++. ..+-+|..|-|+..-=--++..|..|-||++++|- +
T Consensus 265 ~LI~gKsliFV-NtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk 341 (569)
T KOG0346 265 RLIRGKSLIFV-NTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGK 341 (569)
T ss_pred HHHCCCEEEEE-ECHHHHHHHHHHHHHH--CCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCC
T ss_conf 88627549998-5002468899999980--73766525646643212289886076115999706764135552111254
Q ss_pred ---------------------EECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCC
Q ss_conf ---------------------003633223326676250235886045532-21035676736999966888
Q gi|254780947|r 896 ---------------------VESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENR 945 (1187)
Q Consensus 896 ---------------------iEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~ 945 (1187)
+--|||.-|+++.|=-|-- --..=|=-| ||-+|.+..+-|.=++-|..
T Consensus 342 ~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P--~t~~sYIHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346 342 SDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP--ETVTSYIHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred CCCCCCCCCCCCCCCCCCHHCHHCCCCCHHEEEEEECCCC--CCHHHHHHHCCCCCCCCCCCCEEEEECCHH
T ss_conf 4456887742124445701121216540121145613789--854788886122234789872599966467
No 90
>KOG0947 consensus
Probab=98.24 E-value=0.00088 Score=47.87 Aligned_cols=329 Identities=24% Similarity=0.324 Sum_probs=217.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 98998488888744899999998760598854144316654324899999998751127549998243665558999999
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFS 695 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~ 695 (1187)
.+..-.|||+.-.=|..||--... +- -=.|.----=|||=||==|+-.|...+.-..+-.|---|..|-|+-|+
T Consensus 288 pe~a~~~pFelD~FQk~Ai~~ler----g~--SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947 288 PEMALIYPFELDTFQKEAIYHLER----GD--SVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHC----CC--EEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHCCCHHHHHH
T ss_conf 068861887766789999999972----78--179971377884369999999988635515752634654001578887
Q ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHC------CCCCCCCCCEEEEECHHH-----HHHHHH
Q ss_conf 860678983354106663025677775312257608985206542------785202365699722233-----008889
Q gi|254780947|r 696 ERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN------PKITFANLGLIIIDEEQH-----FGVKHK 764 (1187)
Q Consensus 696 ~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~------~~v~f~~LgLliiDEEqr-----FGV~~K 764 (1187)
+-|.+-+ +|.-=+ + | +-...++|=|.-+|- -|+ -.|+--+|.||=|= =||---
T Consensus 362 ~tF~Dvg----LlTGDv---q---i-----nPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWE 425 (1248)
T KOG0947 362 ETFGDVG----LLTGDV---Q---I-----NPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWE 425 (1248)
T ss_pred HHCCCCC----EEECCE---E---E-----CCCCCEEEEHHHHHHHHHHCCCCH-HHCCCEEEEEEEEECCCCCCCCCCE
T ss_conf 7426665----451443---3---2-----777546765699999987515543-2113369874035414413562210
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHH-HHC---CCCCCEEECCCCCCCCEEEEEEECCHHH-------------HHHHH
Q ss_conf 988631678848999535340889999-712---2254122015788775379998579789-------------89999
Q gi|254780947|r 765 EALKETHTGVHVLTLSATPIPRTLQLA-ITG---VRELSLISMPPINRIACRTSISIFDPLV-------------VRETL 827 (1187)
Q Consensus 765 e~lk~~~~~vdvLtlsATPIPRTL~ms-l~g---~rd~S~i~tpP~~R~~v~T~v~~~~~~~-------------i~~ai 827 (1187)
|-|--+-..|...-|||| +|-|+..| ..| =|.+-||.|+ ..-.|..-|+..-.+-. +++|=
T Consensus 426 EViIMlP~HV~~IlLSAT-VPN~~EFA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~ 503 (1248)
T KOG0947 426 EVIIMLPRHVNFILLSAT-VPNTLEFADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAK 503 (1248)
T ss_pred EEEEECCCCCEEEEEECC-CCCHHHHHHHHHHCCCCEEEEEECC-CCCCCEEEEEEECCCEEHHHCCCCHHHHHCCHHHH
T ss_conf 122532554159998465-7981888887504048538997147-88643078998666310001544143553010111
Q ss_pred H--------------------HHHHHCC--------------------------------------EEEEEECCCC----
Q ss_conf 9--------------------8987188--------------------------------------5999826446----
Q gi|254780947|r 828 M--------------------REYYRGG--------------------------------------QSFYVCPRLS---- 845 (1187)
Q Consensus 828 ~--------------------rEl~RgG--------------------------------------Qvf~v~nrv~---- 845 (1187)
. +-..||| -|+|+.+|=.
T Consensus 504 ~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947 504 DSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 12224444331325445466655466776788888766666543234444099999998522467669999735657899
Q ss_pred -----CH--------HHHHHH----HHHHCCCCC---------------EEEEECCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf -----92--------889999----986165464---------------8886134674789999999963887579761
Q gi|254780947|r 846 -----DL--------EKCYTF----LQSEVPELK---------------IAMAHGQMSPKNLEDKMNAFYEGQYDVLLST 893 (1187)
Q Consensus 846 -----~i--------~~~~~~----l~~l~p~~~---------------i~vaHGqm~~~~le~~m~~F~~~~~dvLv~T 893 (1187)
++ .++.-. +..|=++-| |||-||-.=+---|=|=+=|-.|=+-||.+|
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 99975557665212789999999999866854314337788999986140330366307899999999755854788641
Q ss_pred CCEECCCCCCCCCEEEEECHHH--------CCCCHHHHHHHHCCCCCCC--CEEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0200363322332667625023--------5886045532210356767--36999966888889889999999997255
Q gi|254780947|r 894 SIVESGLDLPKANTMIVQRADM--------FGLAQLYQLRGRVGRSKIA--SFALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 894 tIiEsGlDip~aNTiii~~ad~--------~GLaqlyQlrGRVGRs~~~--ayayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
----.|+.+| |-|-++.---+ ++=..++|+-||-||.+-- +|--++.+.. +.+...-+|+ ..-.-+.
T Consensus 664 ETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~l-i~G~~~~ 740 (1248)
T KOG0947 664 ETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRL-IMGGPTR 740 (1248)
T ss_pred HHHHHHCCCC-CEEEEEEEHHHCCCCCEEECCCHHHHHHHCCCCCCCCCCCCEEEEEECCC-CCCHHHHHHH-HCCCCCH
T ss_conf 0565116887-40677330001368642543870577641102445668676089996688-9998998657-5078720
Q ss_pred CCHHHHHH
Q ss_conf 65248999
Q gi|254780947|r 964 LGAGFQLA 971 (1187)
Q Consensus 964 lGsGf~iA 971 (1187)
|-|-|++.
T Consensus 741 L~SQFRlT 748 (1248)
T KOG0947 741 LESQFRLT 748 (1248)
T ss_pred HHHHHHHH
T ss_conf 04454457
No 91
>KOG0337 consensus
Probab=98.18 E-value=0.00041 Score=50.42 Aligned_cols=426 Identities=19% Similarity=0.204 Sum_probs=258.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHH-HHHHHHHHHC---CCCEEEEEEC
Q ss_conf 77878467898998488888744899999998760598854144316654324899-9999987511---2754999824
Q gi|254780947|r 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEI-ALRAAFIAVM---NGLQVAVIAP 682 (1187)
Q Consensus 607 ~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEV-A~RAafkav~---~gkQvavlvP 682 (1187)
++.-|...++.....=--..||=|-+.|.-++ +|+.---|-| +|-|||-- -|+|+-+... .|--.-+|.|
T Consensus 25 smgL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~mar-----tgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337 25 SMGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMAR-----TGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHCCCCCCEE-ECCCCCEEEE-----CCCCCHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf 25878899999998623899841103442003-1452100552-----27861046788999998613644620243267
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-HHHCCCCC----CCCCCEEEEECHH
Q ss_conf 366555899999986067898335410666302567777531225760898520-65427852----0236569972223
Q gi|254780947|r 683 TTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH-ALLNPKIT----FANLGLIIIDEEQ 757 (1187)
Q Consensus 683 TTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-~ll~~~v~----f~~LgLliiDEEq 757 (1187)
|-=||.|-+.-+++==.+-..+..+|----+.-||=.. | .+.=||||.|- |++.-.|+ .+-.--|+.||--
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~---l-~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFIL---L-NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHH---H-CCCCCEEEECCCEEEEEEHHEECCCCCEEEEEEHHHH
T ss_conf 08899999999998515421121011263248899998---4-1599879824851342002100121322566410134
Q ss_pred H-----HHHHHHHHHHHCCCCCCEEEEECCCCCHHH-HHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHH-------HH
Q ss_conf 3-----008889988631678848999535340889-9997122254122015788775379998579789-------89
Q gi|254780947|r 758 H-----FGVKHKEALKETHTGVHVLTLSATPIPRTL-QLAITGVRELSLISMPPINRIACRTSISIFDPLV-------VR 824 (1187)
Q Consensus 758 r-----FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL-~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~-------i~ 824 (1187)
| |--.-+|.+..+-.+--.|-+||| -||+| ..+-.|+.+=- .=|+-|.|-|.+-+... =|
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSat-lp~~lv~fakaGl~~p~------lVRldvetkise~lk~~f~~~~~a~K 247 (529)
T KOG0337 175 RLFEMGFQEQLHEILSRLPESRQTLLFSAT-LPRDLVDFAKAGLVPPV------LVRLDVETKISELLKVRFFRVRKAEK 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHCCCCCCC------EEEEEHHHHCCHHHHHHEEEECCHHH
T ss_conf 787653689999998757776307998523-76446778870688871------68740142105454514223061788
Q ss_pred HH-HHHHH-HHCC--EEEEEECCCCCHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHHCCCCCEEEECCCEEC
Q ss_conf 99-99898-7188--599982644692889999986165464888--613467478999999996388757976102003
Q gi|254780947|r 825 ET-LMREY-YRGG--QSFYVCPRLSDLEKCYTFLQSEVPELKIAM--AHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVES 898 (1187)
Q Consensus 825 ~a-i~rEl-~RgG--Qvf~v~nrv~~i~~~~~~l~~l~p~~~i~v--aHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEs 898 (1187)
+| +++=+ .|++ |.-.-..+-. -++.+.++.-++.+.. ..|+|....=..-..+|-.++..+||.|-+---
T Consensus 248 ~aaLl~il~~~~~~~~t~vf~~tk~----hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaR 323 (529)
T KOG0337 248 EAALLSILGGRIKDKQTIVFVATKH----HVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAAR 323 (529)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEHHHHC
T ss_conf 9999999851256665069831530----478988789863987441114458676650420346775525998423333
Q ss_pred CCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 633223326676250235886045532-2103567673699996688888988999999999725565248999999851
Q gi|254780947|r 899 GLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDI 977 (1187)
Q Consensus 899 GlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~~Dlei 977 (1187)
|+|||--.+-|-.+- =+=.-|.--| |||-|..+.+.||=++-++.. . -|--| ..-||--|..|+.--|+
T Consensus 324 G~diplldnvinyd~--p~~~klFvhRVgr~aragrtg~aYs~V~~~~~-~-----yl~DL--~lflgr~~~~~~~~~e~ 393 (529)
T KOG0337 324 GLDIPLLDNVINYDF--PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD-P-----YLLDL--QLFLGRPLIFAISHFEY 393 (529)
T ss_pred CCCCCCCCCCCCCCC--CCCCCEEEEEECCHHHCCCCCEEEEEEECCCC-H-----HHHHH--HHHCCCCEEECCCHHHH
T ss_conf 588765446564567--99875588871222214566237999722554-5-----55313--44048861320452330
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHH--H-----HHCC-------CCCCCCCCC--CEE-EC----CCCCCCC
Q ss_conf 1630-0046111553898338999999999999--9-----8288-------876766665--256-54----8851167
Q gi|254780947|r 978 RGTG-NLLGEEQSGHIREIGFELYQKMLEETVA--S-----IKGQ-------KDLVESDWS--PQV-LI----EASVMIP 1035 (1187)
Q Consensus 978 RGaG-~llG~~QsG~i~~vG~~ly~~ml~~av~--~-----~kg~-------~~~~~~~~~--~~i-~~----~~~~~ip 1035 (1187)
-+-- .++|..- -++.+.-.+.|++|++.-.. - -|++ +.+.++... -++ .- +.+..++
T Consensus 394 d~~~t~vigr~P-~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~~ 472 (529)
T KOG0337 394 DCDDTTVIGRSP-QSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSFG 472 (529)
T ss_pred CCCCCEEECCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 466632533681-8889888788899984217777799887777777512689999789998875011268784443334
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 34389988899999987508998999999999
Q gi|254780947|r 1036 ESYVSDINLRLSLYRRLGNITDHADISHFKEE 1067 (1187)
Q Consensus 1036 ~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~~~e 1067 (1187)
+. .+.+++++.-+|.+-++.+.+-++...
T Consensus 473 e~---~e~e~~~~~~kik~~r~~~tiFe~~~~ 501 (529)
T KOG0337 473 EN---EEKEKLDILYKIKNYRSRETIFEINKS 501 (529)
T ss_pred CH---HHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 32---667763789987612520022201256
No 92
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.08 E-value=0.00025 Score=52.07 Aligned_cols=158 Identities=19% Similarity=0.298 Sum_probs=119.3
Q ss_pred CEEEEECCCCCHHHHHHHHCCCCCCE----EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHH
Q ss_conf 48999535340889999712225412----20157887753799985797898999998987188599982644692889
Q gi|254780947|r 775 HVLTLSATPIPRTLQLAITGVRELSL----ISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKC 850 (1187)
Q Consensus 775 dvLtlsATPIPRTL~msl~g~rd~S~----i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~ 850 (1187)
-++..||||=+--|..| ..+=+.-+ +--|+..=+|.+.-| +. +-+-|+.-..+|..|....=-...-|..
T Consensus 389 q~iyVSATPg~yEl~~s-~~vvEQiIRPTGLlDP~ievrp~~~Qi----dd-l~~ei~~~~~~~er~LvttlTkkmaEdL 462 (657)
T PRK05298 389 QTIYVSATPGDYELEKS-GQVVEQIIRPTGLLDPEIEVRPTKGQV----DD-LLSEIRKRVAKGERVLVTTLTKRMAEDL 462 (657)
T ss_pred CEEEEECCCCHHHHHHC-CCEEEEEECCCCCCCCCEEEECCCCCH----HH-HHHHHHHHHHCCCEEEEEECHHHHHHHH
T ss_conf 77999569858988736-673457777887879845996487879----99-9999999963697699995459899999
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC----CHHHHHHH
Q ss_conf 99998616546488861346747899999999638875797610200363322332667625023588----60455322
Q gi|254780947|r 851 YTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL----AQLYQLRG 926 (1187)
Q Consensus 851 ~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL----aqlyQlrG 926 (1187)
.+.|.++ +.|+.+.|.-...-|=-+++.++-.|+|||||--...--|||||-+--..|-|||+=|. .-|-|.=|
T Consensus 463 t~yl~~~--~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGFLRs~~SLiQtiG 540 (657)
T PRK05298 463 TDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 540 (657)
T ss_pred HHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 9999967--98079962666188999999998588875897500220457876135798870685221035205999987
Q ss_pred HCCCCCCCCEEEEEE
Q ss_conf 103567673699996
Q gi|254780947|r 927 RVGRSKIASFALFLL 941 (1187)
Q Consensus 927 RVGRs~~~ayayl~~ 941 (1187)
|.-|. ..+-+-|.-
T Consensus 541 RAARN-~~G~vIlYA 554 (657)
T PRK05298 541 RAARN-VNGKVILYA 554 (657)
T ss_pred HHHHC-CCCEEEEEE
T ss_conf 88625-797499981
No 93
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.03 E-value=0.0015 Score=46.14 Aligned_cols=286 Identities=22% Similarity=0.281 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 744899999998760598854144316654324899999998751127--549998243665558999999860678983
Q gi|254780947|r 627 TEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSERFQGFSVR 704 (1187)
Q Consensus 627 T~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~ 704 (1187)
-.=|..||.-|..-.+.+++= -||.=--|=|||=+||--.+.-..+| |-|-+||-++.|..|-|+.| ++|-++.-+
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~r-aLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af-~~~~P~~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNR-ALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAF-EDFLPFGTK 244 (875)
T ss_pred HHHHHHHHHHHHHHHHCCCCE-EEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHH-HHHCCCCCC
T ss_conf 278899999999998668744-899970588852319999999996141430567612678999999999-963988640
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEECH-----HHHCCCCCCCC-----CCEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 35410666302567777531225760898520-----65427852023-----656997222330088899886316788
Q gi|254780947|r 705 IASISRFVQTKEAALHKKSITEGQVDIVIGTH-----ALLNPKITFAN-----LGLIIIDEEQHFGVKHKEALKETHTGV 774 (1187)
Q Consensus 705 i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH-----~ll~~~v~f~~-----LgLliiDEEqrFGV~~Ke~lk~~~~~v 774 (1187)
.-.++- .-..+.-+|.++|- ++.++++.+.. --|+||||-|| |+-.|-+ +.-.-.
T Consensus 245 ~n~i~~------------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-gi~~~~~--~I~dYF 309 (875)
T COG4096 245 MNKIED------------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-GIYSEWS--SILDYF 309 (875)
T ss_pred EEEECC------------CCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH-HHHHHHH--HHHHHH
T ss_conf 123201------------4678630588760377875640654565567888312899606666-6787667--898899
Q ss_pred CEE--EEECCCCC----HHHHHH----------HHCCCCCCEEECCCCCCCC----------------------------
Q ss_conf 489--99535340----889999----------7122254122015788775----------------------------
Q gi|254780947|r 775 HVL--TLSATPIP----RTLQLA----------ITGVRELSLISMPPINRIA---------------------------- 810 (1187)
Q Consensus 775 dvL--tlsATPIP----RTL~ms----------l~g~rd~S~i~tpP~~R~~---------------------------- 810 (1187)
|-+ -|||||=- +|--.= =-|++|=-++. |+.=|.+
T Consensus 310 dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DG~Lvp-y~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 310 DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVP-YKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHCCCCCC-CCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 99887612576211132310133797022412888852154578-86337664315667476755232333134368654
Q ss_pred --------EEEEEEECCHHHHHHHHHHHHHH--CC----EEEEEECCCCCHHHHHHHHHHHCCCCC---EEEEECCCCHH
Q ss_conf --------37999857978989999989871--88----599982644692889999986165464---88861346747
Q gi|254780947|r 811 --------CRTSISIFDPLVVRETLMREYYR--GG----QSFYVCPRLSDLEKCYTFLQSEVPELK---IAMAHGQMSPK 873 (1187)
Q Consensus 811 --------v~T~v~~~~~~~i~~ai~rEl~R--gG----Qvf~v~nrv~~i~~~~~~l~~l~p~~~---i~vaHGqm~~~ 873 (1187)
=+|-|.++....|---+..=+.| +| -.-+-|.....-+.+++.+.+..|+-+ +.+.-|.- .
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~ 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--E 466 (875)
T ss_pred CCCCCCCCCHHEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCC--H
T ss_conf 46333553200003124789999999984256688866845899627078999999998748010674599984440--6
Q ss_pred HHHHHHHHHHCCCCCEEE--ECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 899999999638875797--610200363322332667625023588604553221035676
Q gi|254780947|r 874 NLEDKMNAFYEGQYDVLL--STSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKI 933 (1187)
Q Consensus 874 ~le~~m~~F~~~~~dvLv--~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~ 933 (1187)
+=-+-+.+|...+.+==+ +--.+-||+|+|.+--|+-.+ .-+--.---|+-||=-|-..
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r-~V~SktkF~QMvGRGTRl~~ 527 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDR-KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred HHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHEEEEEEHH-HHHHHHHHHHHHCCCCCCCC
T ss_conf 56899998874378983587612454278762204564314-44668999998667654370
No 94
>PRK09506 mrcB penicillin-binding protein 1b; Reviewed
Probab=97.99 E-value=5.4e-05 Score=57.24 Aligned_cols=88 Identities=13% Similarity=0.323 Sum_probs=70.7
Q ss_pred CHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCC--------CE
Q ss_conf 6678523699866885154899409741999999999982884554521783165457475730698887--------26
Q gi|254780947|r 114 TVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKY--------PV 185 (1187)
Q Consensus 114 t~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~--------Pi 185 (1187)
-.+.-...+| . ......+.|..|..++.++|...|..+||++|..+..||||++.|+-++||.-..+. .+
T Consensus 92 ~f~g~~w~lP-a-~Vyar~l~l~~g~~~~~~~~~~eL~~l~Yr~~~~~~~~G~~~~~~~~~~~~~R~F~f~dg~e~~~~~ 169 (839)
T PRK09506 92 RIDGKVWQLP-A-AVYGRMVNLEPDMSYSKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRA 169 (839)
T ss_pred HCCCCEECCC-H-HHEECCEECCCCCCCCHHHHHHHHHHCCCEECCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEE
T ss_conf 6378620567-5-4321201106899589999999999749703589999805998389899995687899988766689
Q ss_pred EEECCCCEEEEEEEEECC
Q ss_conf 886348722101545137
Q gi|254780947|r 186 RLDFFGNTIDSLRLFDSS 203 (1187)
Q Consensus 186 RIEFFGDeIESIR~FDp~ 203 (1187)
|+.|-|+.|.+|+.-|..
T Consensus 170 ~~~f~~~~v~~i~~~~~~ 187 (839)
T PRK09506 170 RLTFDGDRLATIVNLDNN 187 (839)
T ss_pred EEEECCCEEEEEEECCCC
T ss_conf 999869858886735888
No 95
>KOG0341 consensus
Probab=97.97 E-value=0.0013 Score=46.69 Aligned_cols=293 Identities=23% Similarity=0.303 Sum_probs=186.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHH-----H-------HHHHHHHHCCCCEEEEEECHHHHHHHHHH
Q ss_conf 88744899999998760598854144316654324899-----9-------99998751127549998243665558999
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEI-----A-------LRAAFIAVMNGLQVAVIAPTTLLVRQHFR 692 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEV-----A-------~RAafkav~~gkQvavlvPTTiLa~QH~~ 692 (1187)
..||=|.+-|--|+ |++-|=- ..=-|-|||=| - |+--| +...|---.++||..=||.|-|.
T Consensus 192 ~PTpIQvQGlPvvL----sGRDmIG--IAfTGSGKTlvFvLP~imf~LeqE~~lPf-~~~EGP~gLiicPSRELArQt~~ 264 (610)
T KOG0341 192 HPTPIQVQGLPVVL----SGRDMIG--IAFTGSGKTLVFVLPVIMFALEQEMMLPF-ARGEGPYGLIICPSRELARQTHD 264 (610)
T ss_pred CCCCEEECCCCEEE----ECCCEEE--EEEECCCCEEEEEHHHHHHHHHHHHCCCC-CCCCCCEEEEECCCHHHHHHHHH
T ss_conf 99863333751475----1575266--78606884688709999999988851860-03789735897370899999999
Q ss_pred HHHHHHC-----CCCCCEEEEC-CCCCCHHHHHHHHHHCCCCCEEEEECHHHHC----C-CCCCCCCCEEEEECHHH---
Q ss_conf 9998606-----7898335410-6663025677775312257608985206542----7-85202365699722233---
Q gi|254780947|r 693 LFSERFQ-----GFSVRIASIS-RFVQTKEAALHKKSITEGQVDIVIGTHALLN----P-KITFANLGLIIIDEEQH--- 758 (1187)
Q Consensus 693 tf~~Rf~-----~~pv~i~~ls-Rf~~~~e~~~i~~~l~~G~idiviGTH~ll~----~-~v~f~~LgLliiDEEqr--- 758 (1187)
-..+-++ ++|---..|+ -=.+-++|-+++ +.| |.||+.|---|+ | -+...---.|..||--|
T Consensus 265 iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v---~~G-vHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiD 340 (610)
T KOG0341 265 IIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV---RRG-VHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMID 340 (610)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH---HCC-EEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999876488466566521685389899998---637-06998176268999987640488877765314777760
Q ss_pred --HHHHHHHHHHHCCCCCCEEEEECCCCCHHHH-HHHHCCCCCCEEECCCCCCCCEEEEEEECC---HHHHHHH--HHHH
Q ss_conf --0088899886316788489995353408899-997122254122015788775379998579---7898999--9989
Q gi|254780947|r 759 --FGVKHKEALKETHTGVHVLTLSATPIPRTLQ-LAITGVRELSLISMPPINRIACRTSISIFD---PLVVRET--LMRE 830 (1187)
Q Consensus 759 --FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~-msl~g~rd~S~i~tpP~~R~~v~T~v~~~~---~~~i~~a--i~rE 830 (1187)
|--.-+.-+--+|.+--.|-.||| .|+-.| .+-|.+ -.||..-|..-- -.+|.+. +..|
T Consensus 341 mGFEddir~iF~~FK~QRQTLLFSAT-MP~KIQ~FAkSAL------------VKPvtvNVGRAGAAsldViQevEyVkqE 407 (610)
T KOG0341 341 MGFEDDIRTIFSFFKGQRQTLLFSAT-MPKKIQNFAKSAL------------VKPVTVNVGRAGAASLDVIQEVEYVKQE 407 (610)
T ss_pred CCCHHHHHHHHHHHHHHHHEEEEECC-CCHHHHHHHHHHC------------CCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 56326689999997420223553124-6488998887640------------5645884255542202088999999863
Q ss_pred ---------H-HHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCC
Q ss_conf ---------8-718859998264469288999998616546488861346747899999999638875797610200363
Q gi|254780947|r 831 ---------Y-YRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL 900 (1187)
Q Consensus 831 ---------l-~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGl 900 (1187)
| .----|..-+..-.+.+.+.+.| |+-.+..+-.||--...+-+..+..|-.|+-||||+|-.---||
T Consensus 408 aKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYL--LlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGL 485 (610)
T KOG0341 408 AKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYL--LLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGL 485 (610)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH--HHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCC
T ss_conf 0120699876127996699841456747899999--87251368741686566788899998657874588731000368
Q ss_pred CCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEECCCC
Q ss_conf 3223326676250235886045532-21035676736999966888
Q gi|254780947|r 901 DLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLLPENR 945 (1187)
Q Consensus 901 Dip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~~~~~ 945 (1187)
|.|+....|=+ |+=+=-.=|--| ||-|||++.+.|--++.+..
T Consensus 486 DFp~iqHVINy--DMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341 486 DFPDIQHVINY--DMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred CCCCCHHHCCC--CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 97450444047--880889999997124677888640222114563
No 96
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.97 E-value=0.00015 Score=53.85 Aligned_cols=119 Identities=15% Similarity=0.321 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHH--------HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 999999987511275499982436--------655589999998606789833541066630256777753122576089
Q gi|254780947|r 661 EIALRAAFIAVMNGLQVAVIAPTT--------LLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIV 732 (1187)
Q Consensus 661 EVA~RAafkav~~gkQvavlvPTT--------iLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiv 732 (1187)
+-++.+.-+.+..|.||-++||-- -=|.+-|+..+++|.++ +|+++.-=-+++|+.++.+++++|++||+
T Consensus 454 ~~~~~~i~~~~~~g~q~y~v~p~ieese~~~~~~~~~~~~~l~~~~~~~--~v~~~hG~m~~~ek~~~m~~F~~g~~~iL 531 (677)
T PRK10917 454 DEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQKALPEL--RVGLLHGRMKPAEKDAVMAAFKAGEIDIL 531 (677)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 9999999999975992899941311233201777999999998448997--59983078987899999999983999999
Q ss_pred EECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCC-------CEEEEECCCCC
Q ss_conf 852065427852023656997222330088899886316788-------48999535340
Q gi|254780947|r 733 IGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGV-------HVLTLSATPIP 785 (1187)
Q Consensus 733 iGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~v-------dvLtlsATPIP 785 (1187)
|.|- +.--.|...|.-.+||..-.|||..|=-.|+ .-| -++-++..|+.
T Consensus 532 vsTt-viEvGvdvpna~~mvi~~aerfGlsqLhQLR---GRVgRg~~~~~c~l~~~~~~~ 587 (677)
T PRK10917 532 VATT-VIEVGVDVPNATVMVIENAERFGLAQLHQLR---GRVGRGAAQSYCVLLYKDPLS 587 (677)
T ss_pred EECC-EEECCCCCCCCCEEEEECCCCCCHHHHHHHC---CCCCCCCCCEEEEEEECCCCC
T ss_conf 9898-9755867888858999770105367887742---743678884589998389999
No 97
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.95 E-value=0.003 Score=43.75 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=87.5
Q ss_pred EEEEECCCC---CHHHHHHHHCCCCCC---EEECCCCC-CCCEEEEEEE-------CCH----HHHHHHHHHHHH-HCCE
Q ss_conf 899953534---088999971222541---22015788-7753799985-------797----898999998987-1885
Q gi|254780947|r 776 VLTLSATPI---PRTLQLAITGVRELS---LISMPPIN-RIACRTSISI-------FDP----LVVRETLMREYY-RGGQ 836 (1187)
Q Consensus 776 vLtlsATPI---PRTL~msl~g~rd~S---~i~tpP~~-R~~v~T~v~~-------~~~----~~i~~ai~rEl~-RgGQ 836 (1187)
|.-.|||== +-.-.....|+-+.. ..-..|-+ ..-.+-||.. -+. ..+.++|.+=+. .+|+
T Consensus 679 vi~tSATLtv~~~F~y~~~~lGL~~~~~~~~~l~SPFdy~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~G~ 758 (932)
T PRK08074 679 VILTSATLTVNGSFDYIIERLGLHDFYPRTLQIPSPFSYEEQMKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKGR 758 (932)
T ss_pred EEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99981467889864999986599866752797289998354248998678888889986899999999999999872999
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCC--CEEEEE
Q ss_conf 999826446928899999861654648-886134674789999999963887579761020036332233--266762
Q gi|254780947|r 837 SFYVCPRLSDLEKCYTFLQSEVPELKI-AMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKA--NTMIVQ 911 (1187)
Q Consensus 837 vf~v~nrv~~i~~~~~~l~~l~p~~~i-~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~a--NTiii~ 911 (1187)
+..+.+--+.++.+++.++.-.+...+ -.++| |+...-++.+..|..++--||+-|.--=-|+|+|.- ...||.
T Consensus 759 ~LVLFtS~~~L~~v~~~l~~~~~~~~~~ll~Qg-~~~~sr~~ll~~F~~~~~svLlGt~SFwEGVDlpGd~L~~ViI~ 835 (932)
T PRK08074 759 MLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQG-VTGGSRARLMKKFQQFDKAILLGTSSFWEGIDIPGDELSCLVIV 835 (932)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 999926599999999998643335795599878-98750999999998479849996566435622799886899998
No 98
>KOG0353 consensus
Probab=97.81 E-value=0.0019 Score=45.37 Aligned_cols=301 Identities=21% Similarity=0.247 Sum_probs=198.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHH---HHHHH
Q ss_conf 678989984888887448999999987605988541443166543248999999987511275499982436---65558
Q gi|254780947|r 613 DLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTT---LLVRQ 689 (1187)
Q Consensus 613 ~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTT---iLa~Q 689 (1187)
.|-+ +.||+- |..+-|-.----+|+-+|.. |||.-|+|+|+-+.++.||- -|+.|
T Consensus 70 awdk---d~fpws---~e~~~ilk~~f~lekfrplq----------------~~ain~~ma~ed~~lil~tgggkslcyq 127 (695)
T KOG0353 70 AWDK---DDFPWS---DEAKDILKEQFHLEKFRPLQ----------------LAAINATMAGEDAFLILPTGGGKSLCYQ 127 (695)
T ss_pred CCCC---CCCCCC---HHHHHHHHHHHHHHHCCHHH----------------HHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 2465---789875---17899999876377347037----------------8775552226746999837996124522
Q ss_pred HHHHHHHH------------------HCCCCCCEEEECCCCCCHHHHHHHHHHCC--CCCEEEEECHHHHCCC-------
Q ss_conf 99999986------------------06789833541066630256777753122--5760898520654278-------
Q gi|254780947|r 690 HFRLFSER------------------FQGFSVRIASISRFVQTKEAALHKKSITE--GQVDIVIGTHALLNPK------- 742 (1187)
Q Consensus 690 H~~tf~~R------------------f~~~pv~i~~lsRf~~~~e~~~i~~~l~~--G~idiviGTH~ll~~~------- 742 (1187)
--.-..+- +...+|.-.+|+--.|+-+.|.+-..+-+ .+...+--|---+.|.
T Consensus 128 lpal~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353 128 LPALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHH
T ss_conf 35876287457610268888999999998086444305755488898999987077761589996489987779999999
Q ss_pred ---CCCCCCCEEEEECHHH-------HH--HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEE-----CCC
Q ss_conf ---5202365699722233-------00--888998863167884899953534088999971222541220-----157
Q gi|254780947|r 743 ---ITFANLGLIIIDEEQH-------FG--VKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLIS-----MPP 805 (1187)
Q Consensus 743 ---v~f~~LgLliiDEEqr-------FG--V~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~-----tpP 805 (1187)
.+-.-+-|+-|||-|- |- -+.---||.-.+++-++-||||.--.. |...+||--|+ ++-
T Consensus 208 eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~v----l~d~k~il~ie~~~tf~a~ 283 (695)
T KOG0353 208 EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHV----LDDAKDILCIEAAFTFRAG 283 (695)
T ss_pred HHHHHCCEEEEEEECCEEEHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHCCH----HHHHHHHHHHHHHHEEECC
T ss_conf 987642604898531023265437665741688889997579996563231100003----5678887747865112023
Q ss_pred CCCCCEEEEEEE--CCHHHHHHHHHHHHHH--CCEEEEEE-CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 887753799985--7978989999989871--88599982-644692889999986165464888613467478999999
Q gi|254780947|r 806 INRIACRTSISI--FDPLVVRETLMREYYR--GGQSFYVC-PRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMN 880 (1187)
Q Consensus 806 ~~R~~v~T~v~~--~~~~~i~~ai~rEl~R--gGQvf~v~-nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~ 880 (1187)
.||-..+--|.. -+++--.|-|-+-+.| .||.=.+| =.-.+-+.++.-|+.+= ..-+--|.-|.+.+-.-+-.
T Consensus 284 fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g--i~a~~yha~lep~dks~~hq 361 (695)
T KOG0353 284 FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG--IHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf 6888732674518997577899999985444378765699953465899999998558--35221405568534454000
Q ss_pred HHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHH-------------------------------------
Q ss_conf 9963887579761020036332233266762502358860455-------------------------------------
Q gi|254780947|r 881 AFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQ------------------------------------- 923 (1187)
Q Consensus 881 ~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQ------------------------------------- 923 (1187)
....|++.|.|+|----.|||-|++.-.|- +.---..---||
T Consensus 362 ~w~a~eiqvivatvafgmgidkpdvrfvih-hsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiff 440 (695)
T KOG0353 362 GWIAGEIQVIVATVAFGMGIDKPDVRFVIH-HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFF 440 (695)
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCCEEEE
T ss_conf 330460689999864025678887169995-3661668999988789999876522555678753000433401310122
Q ss_pred ------HHHHCCCCCCCCEEEEEEC
Q ss_conf ------3221035676736999966
Q gi|254780947|r 924 ------LRGRVGRSKIASFALFLLP 942 (1187)
Q Consensus 924 ------lrGRVGRs~~~ayayl~~~ 942 (1187)
--||-||.+..|-|-|.|.
T Consensus 441 avfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353 441 AVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred EEECCHHCCCCCCCCCCCCEEEEEC
T ss_conf 2203110255566888664799842
No 99
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.0033 Score=43.48 Aligned_cols=177 Identities=22% Similarity=0.318 Sum_probs=124.7
Q ss_pred CCCCCEEEEECHHHH----HH------HHHHH---------------------HHHCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 023656997222330----08------88998---------------------863167884899953534088999971
Q gi|254780947|r 745 FANLGLIIIDEEQHF----GV------KHKEA---------------------LKETHTGVHVLTLSATPIPRTLQLAIT 793 (1187)
Q Consensus 745 f~~LgLliiDEEqrF----GV------~~Ke~---------------------lk~~~~~vdvLtlsATPIPRTL~msl~ 793 (1187)
|.+=.||||||-|-= |- .-|+. +-+.. -.+...||||=|--+..|=.
T Consensus 329 fp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~--~q~i~VSATPg~~E~e~s~~ 406 (663)
T COG0556 329 FPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKI--PQTIYVSATPGDYELEQSGG 406 (663)
T ss_pred CCCCEEEEEECCCCCHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--CCEEEEECCCCHHHHHHCCC
T ss_conf 8841389982444650765320133378888898715768611137997779999745--97799978997487774558
Q ss_pred C-----CCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCC--CCEEEE
Q ss_conf 2-----225412201578877537999857978989999989871885999826446928899999861654--648886
Q gi|254780947|r 794 G-----VRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPE--LKIAMA 866 (1187)
Q Consensus 794 g-----~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~--~~i~va 866 (1187)
- ||-.-++ -|+..=.|+.+-| +.++.| |+.-..+|..|+...=- .+||+.|.+-+-| .|+.+.
T Consensus 407 ~vveQiIRPTGLl-DP~ievRp~~~Qv----dDL~~E-I~~r~~~~eRvLVTtLT----KkmAEdLT~Yl~e~gikv~Yl 476 (663)
T COG0556 407 NVVEQIIRPTGLL-DPEIEVRPTKGQV----DDLLSE-IRKRVAKNERVLVTTLT----KKMAEDLTEYLKELGIKVRYL 476 (663)
T ss_pred CEEEEEECCCCCC-CCCEEEECCCCCH----HHHHHH-HHHHHHCCCEEEEEEEH----HHHHHHHHHHHHHCCCEEEEE
T ss_conf 4268872477888-9852651487747----899999-99999649729998436----888999999998669647864
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC----CHHHHHHHHCCCCCC
Q ss_conf 1346747899999999638875797610200363322332667625023588----604553221035676
Q gi|254780947|r 867 HGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL----AQLYQLRGRVGRSKI 933 (1187)
Q Consensus 867 HGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL----aqlyQlrGRVGRs~~ 933 (1187)
|.-...-|=-.++.+.--|+|||||--+..--|||||-+--.-|-|||+=|. .-|-|.=||-.|..+
T Consensus 477 HSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~ 547 (663)
T COG0556 477 HSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 (663)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 24403899999999975778748985013313478864557988606854443453259999878863579
No 100
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.59 E-value=0.00019 Score=53.07 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCCCHH-HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC-CEEE
Q ss_conf 543248-99999998751127549998243665558999999860678983354106663025677775312257-6089
Q gi|254780947|r 655 VGFGKT-EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQ-VDIV 732 (1187)
Q Consensus 655 VGfGKT-EVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~-idiv 732 (1187)
=|=||| .|--+.+..|+..++++.||+||-|-+.--++ -+.+.||++ .|+.-+. .-..|. ||+.
T Consensus 11 PGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~~Em~e----AL~g~~vr~------~t~a~~~----~~~~~~ivdvm 76 (146)
T pfam07652 11 PGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVLAEMEE----ALRGLPIRY------HTPAVSS----EHTGREIVDVM 76 (146)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH----HHCCCCCEE------ECHHHHC----CCCCCCEEEEE
T ss_conf 999970224899999999728618997727999999999----975899467------5234313----66888418897
Q ss_pred E---ECHHHHCCCCCCCCCCEEEEECHHHHHHHH---HHHHHHC--CCCCCEEEEECCCC
Q ss_conf 8---520654278520236569972223300888---9988631--67884899953534
Q gi|254780947|r 733 I---GTHALLNPKITFANLGLIIIDEEQHFGVKH---KEALKET--HTGVHVLTLSATPI 784 (1187)
Q Consensus 733 i---GTH~ll~~~v~f~~LgLliiDEEqrFGV~~---Ke~lk~~--~~~vdvLtlsATPI 784 (1187)
- =|||+|+ .+.-+|-.++|.||-|=---.. .-.+..+ ....-++-|||||=
T Consensus 77 CHAT~t~r~l~-~~~~~ny~viIMDE~H~~DP~SIAarG~~~~~~~~g~~a~i~mTATPP 135 (146)
T pfam07652 77 CHATFTQRLLS-PVRVPNYEVIIMDEAHFTDPASIAARGYISTLVELGEAAAIFMTATPP 135 (146)
T ss_pred CHHHHHHHHHC-CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 15988889736-888564479998512238989999889999885438657999956899
No 101
>TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall.
Probab=97.57 E-value=0.00019 Score=53.09 Aligned_cols=95 Identities=19% Similarity=0.427 Sum_probs=74.9
Q ss_pred HHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCC--------EEEE
Q ss_conf 85236998668851548994097419999999999828845545217831654574757306988872--------6886
Q gi|254780947|r 117 AVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYP--------VRLD 188 (1187)
Q Consensus 117 ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~P--------iRIE 188 (1187)
.....+| .......+.|+.|..++.++++..|.+++|++++.|+.||||++.-+-|++-.=+.+.| +||-
T Consensus 31 G~~W~lP--a~VYaR~~~L~pg~~ls~~e~~~~L~~~~YR~~~~~~~PGey~~~~~~i~~~rR~F~F~D~~Ep~~r~rl~ 108 (742)
T TIGR02071 31 GKVWQLP--AAVYARILNLEPGMSLSKKELLRELDALQYRQVSSVTLPGEYSVQNSSIELIRRPFDFPDGAEPQRRVRLT 108 (742)
T ss_pred CCEEECC--HHHCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 8023047--11100222106630311899999985315760137888821688768789954677888888885689998
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEEC
Q ss_conf 348722101545137485312221699943
Q gi|254780947|r 189 FFGNTIDSLRLFDSSTQRTIREISIFEINT 218 (1187)
Q Consensus 189 FFGDeIESIR~FDp~TQRSi~~i~~i~I~P 218 (1187)
|-+|.+-.|+..| ++|. +..+.+-|
T Consensus 109 F~~~~l~~i~~~~--~~~~---~~~~RL~P 133 (742)
T TIGR02071 109 FNGNKLSKIENLD--NKRE---LGFFRLEP 133 (742)
T ss_pred ECCCCCHHHHHCC--CCCE---EHHCCCCH
T ss_conf 6487110011200--1420---10004560
No 102
>KOG0950 consensus
Probab=97.55 E-value=0.00048 Score=49.92 Aligned_cols=305 Identities=22% Similarity=0.314 Sum_probs=181.2
Q ss_pred CCCCHHH---HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCHH------HHHHHHHH
Q ss_conf 5432489---99999987511275499982436655589999998606789833541-06663025------67777531
Q gi|254780947|r 655 VGFGKTE---IALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASI-SRFVQTKE------AALHKKSI 724 (1187)
Q Consensus 655 VGfGKTE---VA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~l-sRf~~~~e------~~~i~~~l 724 (1187)
-+=|||= +-|++- ++.-.|-|.+..|----++-|-.-...=+.++++.|+.- -||-..+- ...+++ -
T Consensus 249 ts~gktlvaeilml~~--~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiE-k 325 (1008)
T KOG0950 249 TSAGKTLVAEILMLRE--VLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIE-K 325 (1008)
T ss_pred CCCCHHHHHHHHHHHH--HHHHHHCEEEECCEEEHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEHH-H
T ss_conf 7640679999999999--988742116742421025877764002203358862211266899886441045542037-6
Q ss_pred CCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHH----------HHHHCCCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf 22576089852065427852023656997222330088899----------88631678848999535340889999712
Q gi|254780947|r 725 TEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKE----------ALKETHTGVHVLTLSATPIPRTLQLAITG 794 (1187)
Q Consensus 725 ~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke----------~lk~~~~~vdvLtlsATPIPRTL~msl~g 794 (1187)
+++-|+++|-+-|+ .-+|+++|||-|=||=++.- -+....+.|-+..||||= | |.++
T Consensus 326 anslin~lie~g~~-------~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi-~---N~~l-- 392 (1008)
T KOG0950 326 ANSLINSLIEQGRL-------DFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATI-P---NNSL-- 392 (1008)
T ss_pred HHHHHHHHHHCCCC-------CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-C---CHHH--
T ss_conf 67688888761783-------304728975224640356355899999999996325634676552414-7---7488--
Q ss_pred CCCCCEEECCCCCCCCEEE--EEEE----CCHHHHHHHHHHHHH------------------------HCCEEEEEECCC
Q ss_conf 2254122015788775379--9985----797898999998987------------------------188599982644
Q gi|254780947|r 795 VRELSLISMPPINRIACRT--SISI----FDPLVVRETLMREYY------------------------RGGQSFYVCPRL 844 (1187)
Q Consensus 795 ~rd~S~i~tpP~~R~~v~T--~v~~----~~~~~i~~ai~rEl~------------------------RgGQvf~v~nrv 844 (1187)
++|..-=.-=|.++.||.- |+.. |+-. +.-..||+. .|-+|-.+|+--
T Consensus 393 L~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~--r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk 470 (1008)
T KOG0950 393 LQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS--RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSK 470 (1008)
T ss_pred HHHHHHHHHEECCCCCCCCHHCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHCCCEEEEECCCC
T ss_conf 998864323204667643010367776301230--567777754322220256797554421254652587179975764
Q ss_pred CCHHHHHHHHHHHCC------------------------------------CCCEEEEECCCCHHHHHHHHHHHHCCCCC
Q ss_conf 692889999986165------------------------------------46488861346747899999999638875
Q gi|254780947|r 845 SDLEKCYTFLQSEVP------------------------------------ELKIAMAHGQMSPKNLEDKMNAFYEGQYD 888 (1187)
Q Consensus 845 ~~i~~~~~~l~~l~p------------------------------------~~~i~vaHGqm~~~~le~~m~~F~~~~~d 888 (1187)
.+-+.+|..+..-+| ..-+++-|--..-.|=|-|=..|-+|-.-
T Consensus 471 ~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~ 550 (1008)
T KOG0950 471 KNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIF 550 (1008)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCCCEECCCCCCCCHHHHHHHHHHHCCEE
T ss_conf 33477888898872676655665457778888757640775445387602003533034446500688899999746769
Q ss_pred EEEECCCEECCCCCCCCCEEEEECHHHCCCCHHH-----HHHHHCCCC--CCCCEEEEEECCCC-----CCCHHHHHHHH
Q ss_conf 7976102003633223326676250235886045-----532210356--76736999966888-----88988999999
Q gi|254780947|r 889 VLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY-----QLRGRVGRS--KIASFALFLLPENR-----PLTAAAQKRLR 956 (1187)
Q Consensus 889 vLv~TtIiEsGlDip~aNTiii~~ad~~GLaqly-----QlrGRVGRs--~~~ayayl~~~~~~-----~l~~~a~kRL~ 956 (1187)
|++||.-+-+|.-.|--- +|.+|-++|-.||- |+=||-||- +..+=+.|...+.. .|-..+.+++.
T Consensus 551 vl~aTSTlaaGVNLPArR--VIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~ 628 (1008)
T KOG0950 551 VLVATSTLAAGVNLPARR--VIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLN 628 (1008)
T ss_pred EEEECCHHHCCCCCCCCE--EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCC
T ss_conf 999434464068687511--587477546230002467765302000334657655898503335677888716665310
Q ss_pred HHHHHCCCCHH--HHHHHHHHHHCC
Q ss_conf 99972556524--899999985116
Q gi|254780947|r 957 ILQSLNTLGAG--FQLASYDLDIRG 979 (1187)
Q Consensus 957 ai~~~~~lGsG--f~iA~~DleiRG 979 (1187)
..-+.+..|++ +.+..-++.|++
T Consensus 629 S~l~~e~~g~~~~~ilsvI~~~ia~ 653 (1008)
T KOG0950 629 SCLSNEVNGPILMAILSLISLKIAE 653 (1008)
T ss_pred CCCCCCCCCCCCEEEHHHHCCHHHH
T ss_conf 0001234653112312341402454
No 103
>COG4889 Predicted helicase [General function prediction only]
Probab=97.55 E-value=0.011 Score=39.38 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=81.7
Q ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC----CCCHHHHHH-------
Q ss_conf 3234340-3489999999999999999999999988740156778784678989984888----887448999-------
Q gi|254780947|r 566 TLDKLGG-SAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPH----VETEDQEKA------- 633 (1187)
Q Consensus 566 ~L~kLGg-~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~Fpy----eET~DQ~~A------- 633 (1187)
-.+|+|. +-|+.= .+.+-+||.-|+.--. .-|..++..+..|-++.-- --++||.-.
T Consensus 662 ~v~KvGdR~YwEnw----akdva~IA~tl~~rik-------~L~~k~p~~F~~Fl~sLr~NinesI~edeA~~MlsqHlI 730 (1518)
T COG4889 662 MVTKVGDRNYWENW----AKDVANIARTLINRIK-------LLFGKNPIEFENFLTSLRGNINESIKEDEALDMLSQHLI 730 (1518)
T ss_pred HHHHCCCHHHHHHH----HHHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 52522644689988----8889999999999999-------973898899999999986544124787789999997562
Q ss_pred ----HHHHHHHCCC---CCCCCEEE--ECCCCCCH-HH--------HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH-
Q ss_conf ----9999876059---88541443--16654324-89--------999999875112754999824366555899999-
Q gi|254780947|r 634 ----IDAVIQDLSS---GRLMDRLI--CGDVGFGK-TE--------IALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF- 694 (1187)
Q Consensus 634 ----I~eV~~Dmes---~~PMDRLi--CGDVGfGK-TE--------VA~RAafkav~~gkQvavlvPTTiLa~QH~~tf- 694 (1187)
.++..+|-.. .+.||+.+ .++.|+-+ || |-+||+=.--..|||-. -.--|++|
T Consensus 731 TkPiFdALFa~~~qNPvsqam~kmv~~l~~agle~Et~~Le~lYeSVr~rA~~~~sa~~kQ~~--------Ik~LY~~FF 802 (1518)
T COG4889 731 TKPIFDALFAENIQNPVSQAMDKMVDKLSDAGLEGETEDLENLYESVRTRAAEAKSAKSKQEL--------IKNLYNTFF 802 (1518)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHH
T ss_conf 026789986310468399999999998741344110666888999999887642551027899--------999999999
Q ss_pred HHHHCC---------CCCCE-EEECCCCCCHHHHHHHHHHCCCCCEEE---EEC----HHHHC
Q ss_conf 986067---------89833-541066630256777753122576089---852----06542
Q gi|254780947|r 695 SERFQG---------FSVRI-ASISRFVQTKEAALHKKSITEGQVDIV---IGT----HALLN 740 (1187)
Q Consensus 695 ~~Rf~~---------~pv~i-~~lsRf~~~~e~~~i~~~l~~G~idiv---iGT----H~ll~ 740 (1187)
++-|+. -||.| +.+-|-..---+|.-=.+|.+-.|.|+ -|| -||||
T Consensus 803 k~aFKkqsE~LGIVyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~ 865 (1518)
T COG4889 803 KEAFKKQSEKLGIVYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLS 865 (1518)
T ss_pred HHHHHHHHHHCCEEECCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 999987676415043146676678885113889871888665770663477874078999999
No 104
>KOG0387 consensus
Probab=97.47 E-value=0.0023 Score=44.67 Aligned_cols=133 Identities=22% Similarity=0.306 Sum_probs=84.6
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCC-----CEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC---------CHH
Q ss_conf 316654324899999998751127-----549998243665558999999860678983354106663---------025
Q gi|254780947|r 651 ICGDVGFGKTEIALRAAFIAVMNG-----LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQ---------TKE 716 (1187)
Q Consensus 651 iCGDVGfGKTEVA~RAafkav~~g-----kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~---------~~e 716 (1187)
|--|.|-|||==-+ ||.|+.-+ +-+.|+||+||++ |-..-|..-+..| +|..|----+ ..-
T Consensus 229 LgDeMGLGKTIQii--sFLaaL~~S~k~~~paLIVCP~Tii~-qW~~E~~~w~p~~--rv~ilh~t~s~~r~~~~~~~~~ 303 (923)
T KOG0387 229 LGDEMGLGKTIQII--SFLAALHHSGKLTKPALIVCPATIIH-QWMKEFQTWWPPF--RVFILHGTGSGARYDASHSSHK 303 (923)
T ss_pred ECCCCCCCCCHHHH--HHHHHHHHCCCCCCCEEEECCHHHHH-HHHHHHHHHCCCE--EEEEEECCCCCCCCCCCHHHHH
T ss_conf 20123576401589--99998750243258659982488999-9999998747653--7999714776544443101344
Q ss_pred HHHHHHHHCCCCCEEEEEC---HHHHCCCCCCCCCCEEEEECHHHHHHH---HHHHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 6777753122576089852---065427852023656997222330088---899886316788489995353408899
Q gi|254780947|r 717 AALHKKSITEGQVDIVIGT---HALLNPKITFANLGLIIIDEEQHFGVK---HKEALKETHTGVHVLTLSATPIPRTLQ 789 (1187)
Q Consensus 717 ~~~i~~~l~~G~idiviGT---H~ll~~~v~f~~LgLliiDEEqrFGV~---~Ke~lk~~~~~vdvLtlsATPIPRTL~ 789 (1187)
....+.....-...|+|-| ||+.++++.=.+-+-+|.||-||--=. --...|++++ ++=.-||-|||---|-
T Consensus 304 ~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T-~~RiILSGTPiQNnL~ 381 (923)
T KOG0387 304 KDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRT-VHRIILSGTPIQNNLT 381 (923)
T ss_pred HHHHHEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCC-CCEEEEECCCCCCHHH
T ss_conf 31222035304684799742242004752346503479823765046985089999986156-6648861862101089
No 105
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.44 E-value=0.0096 Score=39.87 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH-HHHHHHHHCCCCCEEEECCCEECCCC
Q ss_conf 89999989871885999826446928899999861654648886134674789-99999996388757976102003633
Q gi|254780947|r 823 VRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNL-EDKMNAFYEGQYDVLLSTSIVESGLD 901 (1187)
Q Consensus 823 i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~l-e~~m~~F~~~~~dvLv~TtIiEsGlD 901 (1187)
+.+.|.+=+...|..+.+.+-.+.++.+++.|++-.+. + ..+.|+++..+| ++--..|-+|+--||+.|.--=-|+|
T Consensus 523 ~~~~i~~~~~~~~g~LVLFtS~~~l~~v~~~l~~~~~~-~-ll~Qg~~~r~~ll~~f~~~~~~~~~svLlGt~SFwEGVD 600 (697)
T PRK11747 523 MAAYLPELLEGHKGSLVLFSSRRQMQKVADLLPGDLRL-L-LLVQGEQPRQELLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCC-C-EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 99999999985698499950199999999987663488-3-899568659999999999861689829996753126613
Q ss_pred CCCC--CEEEEEC
Q ss_conf 2233--2667625
Q gi|254780947|r 902 LPKA--NTMIVQR 912 (1187)
Q Consensus 902 ip~a--NTiii~~ 912 (1187)
+|.- ...||.+
T Consensus 601 ~pG~~L~~VII~k 613 (697)
T PRK11747 601 LPGDYLTQVIITK 613 (697)
T ss_pred CCCCCEEEEEEEC
T ss_conf 6987878999974
No 106
>KOG0920 consensus
Probab=97.43 E-value=0.00052 Score=49.65 Aligned_cols=407 Identities=18% Similarity=0.216 Sum_probs=225.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHH-HHCCCCEEEEEECHHHHHHHHH---------HHHHHHHCCCCCCEEEECCCCCCHHH
Q ss_conf 1443166543248999999987-5112754999824366555899---------99998606789833541066630256
Q gi|254780947|r 648 DRLICGDVGFGKTEIALRAAFI-AVMNGLQVAVIAPTTLLVRQHF---------RLFSERFQGFSVRIASISRFVQTKEA 717 (1187)
Q Consensus 648 DRLiCGDVGfGKTEVA~RAafk-av~~gkQvavlvPTTiLa~QH~---------~tf~~Rf~~~pv~i~~lsRf~~~~e~ 717 (1187)
-.+|||+-|-|||-=.--=.-- ++.+| .+.+|.+.|-- +--.||...-+-.|+.==|..++.-.
T Consensus 190 VvvIsGeTGcGKtTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~ 263 (924)
T KOG0920 190 VVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSR 263 (924)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 6999578898712246699999998628------9973886677517789999999887546668713689862013677
Q ss_pred HHHHHHHCCCCCEEEEEC----HHHHCCCCCCCCCCEEEEECHHHHHH------HHHHHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 777753122576089852----06542785202365699722233008------88998863167884899953534088
Q gi|254780947|r 718 ALHKKSITEGQVDIVIGT----HALLNPKITFANLGLIIIDEEQHFGV------KHKEALKETHTGVHVLTLSATPIPRT 787 (1187)
Q Consensus 718 ~~i~~~l~~G~idiviGT----H~ll~~~v~f~~LgLliiDEEqrFGV------~~Ke~lk~~~~~vdvLtlsATPIPRT 787 (1187)
. .-++--| =|.|+.|-...+.+-+|+||=|-=++ -..-.+=..++++-|.-||||==--+
T Consensus 264 ~----------t~L~fcTtGvLLr~L~~~~~l~~~thiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~ 333 (924)
T KOG0920 264 E----------TRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAEL 333 (924)
T ss_pred C----------EEEEEECHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf 5----------168984068999875468621458665442279716775217999998862288856998621126288
Q ss_pred HHHHHHCCCCCCEEECCCCCCCCEEEE-----------------------------------EEECCHHHHHHHHHH--H
Q ss_conf 999971222541220157887753799-----------------------------------985797898999998--9
Q gi|254780947|r 788 LQLAITGVRELSLISMPPINRIACRTS-----------------------------------ISIFDPLVVRETLMR--E 830 (1187)
Q Consensus 788 L~msl~g~rd~S~i~tpP~~R~~v~T~-----------------------------------v~~~~~~~i~~ai~r--E 830 (1187)
..--..| .-.-|-|-..+||++| -.+-|-.+|-+-|.. |
T Consensus 334 fs~YF~~----~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~ 409 (924)
T KOG0920 334 FSDYFGG----CPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDE 409 (924)
T ss_pred HHHHHCC----CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCC
T ss_conf 8987189----935864687864588789999987514444556555556674432220011542147799999874055
Q ss_pred HHHCCEEEEEECCCCCHHHHHHHHHHHCCCCC-----EEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCC
Q ss_conf 87188599982644692889999986165464-----8886134674789999999963887579761020036332233
Q gi|254780947|r 831 YYRGGQSFYVCPRLSDLEKCYTFLQSEVPELK-----IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKA 905 (1187)
Q Consensus 831 l~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~-----i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~a 905 (1187)
-.+.|-+-.--+-+++|..+.+.|+...|-.. |-.-|++|+..|=..|...--.|.--|+++|.|-||.|-||-+
T Consensus 410 ~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~~~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDV 489 (924)
T KOG0920 410 REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDV 489 (924)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 78874289974888999999997541566566662588705100886889986178999951232220137534523674
Q ss_pred CEEEE--------ECHH---------HCCCCHHHHHHHHCCCCCCCCEEEEEECCCC--------CCCHHHHHHHHHHHH
Q ss_conf 26676--------2502---------3588604553221035676736999966888--------889889999999997
Q gi|254780947|r 906 NTMIV--------QRAD---------MFGLAQLYQLRGRVGRSKIASFALFLLPENR--------PLTAAAQKRLRILQS 960 (1187)
Q Consensus 906 NTiii--------~~ad---------~~GLaqlyQlrGRVGRs~~~ayayl~~~~~~--------~l~~~a~kRL~ai~~ 960 (1187)
=--|- .|+. .--=|+--|=|||.||- +-++||=+|++.. .+.|..+-=|+-+.=
T Consensus 490 vyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~Ly~~~~~~~~~~~~q~PEilR~pL~el~L 568 (924)
T KOG0920 490 VYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCL 568 (924)
T ss_pred EEEEECCEEEEEEECCCCCCCCCEEEECCCCCHHHHCCCCCCC-CCCEEEEECCCHHHHHCCCCCCCHHHHHCHHHHHHE
T ss_conf 7998647154444056678540002420100367754555564-576268840534333234134880777572876430
Q ss_pred ---HCCC---------------CHHHHHHHHHHHHCCC----------CCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ---2556---------------5248999999851163----------00046----11155389833899999999999
Q gi|254780947|r 961 ---LNTL---------------GAGFQLASYDLDIRGT----------GNLLG----EEQSGHIREIGFELYQKMLEETV 1008 (1187)
Q Consensus 961 ---~~~l---------------GsGf~iA~~DleiRGa----------G~llG----~~QsG~i~~vG~~ly~~ml~~av 1008 (1187)
.-+. -+....|..=|...|| |-.|+ +-+.|-+--.|+ +.++|+.++
T Consensus 569 ~iK~l~~~~~~~fLskaldpP~~~av~~A~~~L~~iGAL~~~e~LT~LG~~la~LPvd~~igK~ll~g~--if~cLdp~l 646 (924)
T KOG0920 569 HIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGA--IFGCLDPAL 646 (924)
T ss_pred EEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH--HHCCCCHHH
T ss_conf 333026665999999722799768999999998875555576422189999876887655324553222--415565034
Q ss_pred H--HHHCCCCCCCCCCCC--EEECCCCCCCCHHHCCCHHHHHHHHHHHHHCC-------------------CHHHHHHHH
Q ss_conf 9--982888767666652--56548851167343899888999999875089-------------------989999999
Q gi|254780947|r 1009 A--SIKGQKDLVESDWSP--QVLIEASVMIPESYVSDINLRLSLYRRLGNIT-------------------DHADISHFK 1065 (1187)
Q Consensus 1009 ~--~~kg~~~~~~~~~~~--~i~~~~~~~ip~~yi~d~~~rl~~Y~ri~~~~-------------------~~~~~~~~~ 1065 (1187)
. +.-.-+.|-..+++. ..+=-...|.-++ .+|.-..+..|...-.+. +..++..++
T Consensus 647 ~iaA~Ls~~~PF~~~~~~~~~~~~~~~~~~~~~-~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~ 725 (924)
T KOG0920 647 TIAAALSFKSPFVSPLGKREEADKAKKLLALDS-ISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLR 725 (924)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 277775468874267770568999999850487-4259999999999999985161689988988412699999999999
Q ss_pred HHHH---HHCCCCCHH
Q ss_conf 9977---624889889
Q gi|254780947|r 1066 EEMV---DRFGPLPIE 1078 (1187)
Q Consensus 1066 ~el~---drfG~~P~~ 1078 (1187)
.++. -++|.+|..
T Consensus 726 ~q~~~~l~~~g~~~~~ 741 (924)
T KOG0920 726 VQFLELLSDIGLIPIS 741 (924)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9999986434301477
No 107
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.41 E-value=0.0025 Score=44.35 Aligned_cols=181 Identities=20% Similarity=0.248 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87448999999987605988541443166543248999999987511-27549998243665558999999860678983
Q gi|254780947|r 626 ETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM-NGLQVAVIAPTTLLVRQHFRLFSERFQGFSVR 704 (1187)
Q Consensus 626 ET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~-~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~ 704 (1187)
.++....|...+.-=..+.+..= +|+|+||-|||- .+|+...... +...++.+..|++=...-+++...-| ++.
T Consensus 24 ~s~~h~~al~~L~~~l~~~~g~~-lltGe~GtGKTt-llr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~l---g~~ 98 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFI-LITGEVGAGKTT-LIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADF---GLE 98 (269)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEE-EEECCCCCCHHH-HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHC---CCC
T ss_conf 78669999999999996489659-997299898899-9999998459345489997699999999999999985---989
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 35410666302567777531225760898520654278520236569972223300888998863167884899953534
Q gi|254780947|r 705 IASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPI 784 (1187)
Q Consensus 705 i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPI 784 (1187)
..-.++-..-.+-.+.+..+. ... .--+|||||=|.....-=|.|+.+-. . .|.=
T Consensus 99 ~~~~~~~~~~~~l~~~L~~~~--------------~~g----~~~vliIDEAq~L~~~~Le~Lr~L~n-~------e~~~ 153 (269)
T TIGR03015 99 TEGRDKAALLRELEDFLIEQF--------------AAG----KRALLVVDEAQNLTPELLEELRMLSN-F------QTDN 153 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--------------HCC----CCEEEEEECHHHCCHHHHHHHHHHHC-C------CCCC
T ss_conf 889899999999999999999--------------669----94699972422199999999999970-1------3588
Q ss_pred CHHHHHHHHCCCCCCE-EECC----CCCCCCEEEEEEECCHHHHHHHHHHHHHHCCE
Q ss_conf 0889999712225412-2015----78877537999857978989999989871885
Q gi|254780947|r 785 PRTLQLAITGVRELSL-ISMP----PINRIACRTSISIFDPLVVRETLMREYYRGGQ 836 (1187)
Q Consensus 785 PRTL~msl~g~rd~S~-i~tp----P~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQ 836 (1187)
..-+++-|+|--++.- +..| =..|..++-++.+++.+-..+=|..=|.+-|-
T Consensus 154 ~~ll~iiL~GqpeL~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~ 210 (269)
T TIGR03015 154 AKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGN 210 (269)
T ss_pred CCCEEEEEECCHHHHHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 870489995786799987274025455507679984799989999999999986699
No 108
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=97.38 E-value=0.00031 Score=51.35 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=69.9
Q ss_pred EEECCCCCCHHHHHHHH-HHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHH
Q ss_conf 89803765227999999-9862-998999929989999999999985799809985722467010048998999999999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE-IARL-GLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSC 95 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~-l~~~-~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~ 95 (1187)
+.=+|+.-|+..+++|. +|.. ++-..+|.|+..-+.|.++-|+.+.++..+..=--| ...|..+ ...+|=++
T Consensus 105 ~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~-~~yhS~L-----~~~~kke~ 178 (1843)
T TIGR01054 105 VAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLL-GAYHSKL-----STKEKKEV 178 (1843)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEE-EEEECCC-----CHHHHHHH
T ss_conf 80588767799999999986542987899947078899999998752002575000022-2101126-----54567889
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHH-CCEEEEECCCCC
Q ss_conf 9998412446887699956678523699866885-154899409741
Q gi|254780947|r 96 ISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIK-DYKLSIQSKDQI 141 (1187)
Q Consensus 96 L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~-~~~l~L~vGd~i 141 (1187)
+.++. ++.-.|+|||..=|..+. +.+. ++.|.|--=|.+
T Consensus 179 ~Eri~----~GDfdilitT~~FL~K~~---~~L~~~y~F~liFVDDV 218 (1843)
T TIGR01054 179 KERIE----NGDFDILITTSMFLSKNF---DKLKNQYKFDLIFVDDV 218 (1843)
T ss_pred HHHHH----CCCEEEEHHHHHHHHHHH---HHCCCCCEEEEEEEECH
T ss_conf 99873----189178612246888766---51789851448997153
No 109
>KOG0349 consensus
Probab=97.29 E-value=0.022 Score=37.13 Aligned_cols=261 Identities=19% Similarity=0.273 Sum_probs=145.6
Q ss_pred HHHCCCCEEEEEECHHHHHHHHHH---HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCC--
Q ss_conf 751127549998243665558999---999860678983354106663025677775312257608985206542785--
Q gi|254780947|r 669 IAVMNGLQVAVIAPTTLLVRQHFR---LFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKI-- 743 (1187)
Q Consensus 669 kav~~gkQvavlvPTTiLa~QH~~---tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v-- 743 (1187)
|-+.+.-|..++-|.--||+|-|+ -|+--.++=-|+--++--=+-+.+| ++.+++|. |||+||-+-|-.-|
T Consensus 281 k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q---~~ql~~g~-~ivvGtpgRl~~~is~ 356 (725)
T KOG0349 281 KPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQ---CKQLKDGT-HIVVGTPGRLLQPISK 356 (725)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HHHHHCCC-EEEECCCHHHHHHHHC
T ss_conf 6699984006854768899998766998876438765644412355776888---88762486-0551584156555420
Q ss_pred ---CCCCCCEEEEECHHHHHH-HHHHHHHHCCCCC--------------CEEEEEC----------------------CC
Q ss_conf ---202365699722233008-8899886316788--------------4899953----------------------53
Q gi|254780947|r 744 ---TFANLGLIIIDEEQHFGV-KHKEALKETHTGV--------------HVLTLSA----------------------TP 783 (1187)
Q Consensus 744 ---~f~~LgLliiDEEqrFGV-~~Ke~lk~~~~~v--------------dvLtlsA----------------------TP 783 (1187)
....--.|+.||---|=- ---++|-.+..++ ---||++ --
T Consensus 357 g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~ 436 (725)
T KOG0349 357 GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL 436 (725)
T ss_pred CCEEEEEEEEEEECCHHHHHHCCCHHHHHHHHCCCHHHHCCCCCCCCCEEEEEEEEEEEEEHHHHHCCCCEEEECCCCCC
T ss_conf 65133234789832336655054178999986334133147761233114337767776663334314741575035545
Q ss_pred CCHHHHHHHHCCCCCCEEECCCCCC------CCEEE-------EE--EECCHHHHHHHH-----------HHHHHHCCEE
Q ss_conf 4088999971222541220157887------75379-------99--857978989999-----------9898718859
Q gi|254780947|r 784 IPRTLQLAITGVRELSLISMPPINR------IACRT-------SI--SIFDPLVVRETL-----------MREYYRGGQS 837 (1187)
Q Consensus 784 IPRTL~msl~g~rd~S~i~tpP~~R------~~v~T-------~v--~~~~~~~i~~ai-----------~rEl~RgGQv 837 (1187)
.|-|.| +.-.+.-|-.++ .+|.| ++ ...+++...+|+ .|+.+-. |.
T Consensus 437 vpetvH-------hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~md-ka 508 (725)
T KOG0349 437 VPETVH-------HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMD-KA 508 (725)
T ss_pred CCHHHC-------CCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCC-CE
T ss_conf 643221-------5344227766860888764521477663233245657999845665775473320105553467-45
Q ss_pred EEEECCCCCHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHC
Q ss_conf 998264469288999998616-5464888613467478999999996388757976102003633223326676250235
Q gi|254780947|r 838 FYVCPRLSDLEKCYTFLQSEV-PELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF 916 (1187)
Q Consensus 838 f~v~nrv~~i~~~~~~l~~l~-p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~ 916 (1187)
.|.|-.-.+-+.....+.+-- -.-.-.-.||..++.|-..-+..|-.+..--|+||-.---||||...--||--- .=
T Consensus 509 iifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invt--lp 586 (725)
T KOG0349 509 IIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVT--LP 586 (725)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCCEEEEEE--CC
T ss_conf 9997035661679999987278640368882478826778878766525727999710443566542772599985--58
Q ss_pred CCCHHHHHH-HHCCCCCCCCEEEEEECC
Q ss_conf 886045532-210356767369999668
Q gi|254780947|r 917 GLAQLYQLR-GRVGRSKIASFALFLLPE 943 (1187)
Q Consensus 917 GLaqlyQlr-GRVGRs~~~ayayl~~~~ 943 (1187)
-=-|=|--| |||||..|.+.|--++..
T Consensus 587 d~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349 587 DDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred CCCCHHHHHHHCCCHHHHCCEEEEEEEC
T ss_conf 6541154564020145440504777641
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.00072 Score=48.57 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 458999998677648873
Q gi|254780947|r 418 QGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 418 ~~~~eRL~elL~e~gI~~ 435 (1187)
..-++.+.+.|+++|+++
T Consensus 348 ~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 348 REKAEELAEYLRSHGINA 365 (1187)
T ss_pred HHHHHHHHHHHHHCCCEE
T ss_conf 899999999998669607
No 111
>PRK09401 reverse gyrase; Reviewed
Probab=97.14 E-value=0.0015 Score=46.15 Aligned_cols=139 Identities=22% Similarity=0.249 Sum_probs=63.8
Q ss_pred EEEEEHHHHHHHHHH---CC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 799666752111100---36--7888532343403489999999999999999999999988740156778784678989
Q gi|254780947|r 544 KLFVPVENIDLISRY---ST--EITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQF 618 (1187)
Q Consensus 544 kLYVPv~~l~lIskY---g~--~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eF 618 (1187)
.-|+|+.+ -|.|. |. .+..++--+-||..-. -|.++=++.+++|.|-=++|- |=-||.+-
T Consensus 668 ~~fiPvY~--~IkrC~~cg~qft~~~~~cP~Cgs~~i~-dk~~vv~aLR~lA~EvDeVyI--------ATDPDREG---- 732 (1176)
T PRK09401 668 GKFVPVYN--SIKRCRDCGHQFTDESDRCPRCGSTNID-DKEEIIEALRELALEVDEVLI--------ATDPDTEG---- 732 (1176)
T ss_pred CEEEEEEH--HHHHHHHCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCEEEE--------CCCCCCCC----
T ss_conf 80898416--6767753586012466668877888756-689999999999875598998--------78998563----
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 9848888874489999999876059--88541443166543248999999987511275499982436655589999998
Q gi|254780947|r 619 IKRFPHVETEDQEKAIDAVIQDLSS--GRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 619 e~~FpyeET~DQ~~AI~eV~~Dmes--~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~ 696 (1187)
| ||.==..+.-+ .+.--|..---+ |.-|+..||+- -+.+ =.-+-..|..+-..+
T Consensus 733 E-------------aIAwhl~~~Lk~~~~~ikRI~FhEI----Tk~AI~~Al~n---pr~I----d~nLV~AQ~aRRilD 788 (1176)
T PRK09401 733 E-------------KIAWDVYLLLSPYNPNIKRIEFHEV----TRRAILEALKN---PRDV----DENLVKAQIVRRIED 788 (1176)
T ss_pred H-------------HHHHHHHHHHCCCCCCCEEEEEECC----CHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHH
T ss_conf 8-------------9999999983554898337998434----99999999849---5116----988889999999999
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHH-HHHHCCCCCE
Q ss_conf 606789833541066630256777-7531225760
Q gi|254780947|r 697 RFQGFSVRIASISRFVQTKEAALH-KKSITEGQVD 730 (1187)
Q Consensus 697 Rf~~~pv~i~~lsRf~~~~e~~~i-~~~l~~G~id 730 (1187)
|+-||-+ |+.=++++ ..+|..|.|.
T Consensus 789 RlVGf~L---------Sp~Lwkk~~~~~LSAGRVQ 814 (1176)
T PRK09401 789 RWIGFEL---------SQKLQKRFGKRNLSAGRVQ 814 (1176)
T ss_pred HHHCCEE---------CHHHHHHCCCCCCCCCCCH
T ss_conf 8815722---------7999985588999866134
No 112
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=97.04 E-value=0.037 Score=35.36 Aligned_cols=243 Identities=21% Similarity=0.292 Sum_probs=178.6
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEE-EECHHHHCCCC----CCCCCCEEEEECHH-------HHHHH
Q ss_conf 98606789833541066630256777753122576089-85206542785----20236569972223-------30088
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIV-IGTHALLNPKI----TFANLGLIIIDEEQ-------HFGVK 762 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiv-iGTH~ll~~~v----~f~~LgLliiDEEq-------rFGV~ 762 (1187)
++-+.-.+|.=+.|+==.|.+|+.+|...+.+|+||++ |-==||.+... +=-.+-|+=|||=| =|=+.
T Consensus 70 Vd~L~~~Gv~Aa~lNSt~s~~E~~~i~~~~~~G~~~LLYvAPERL~~~~Fl~~L~~~~i~L~AvDEAHCvSQWGHDFRPe 149 (607)
T TIGR01389 70 VDQLRAAGVAAAYLNSTLSAKEQQEIEKALVNGELKLLYVAPERLEQDYFLNMLKRLTIALLAVDEAHCVSQWGHDFRPE 149 (607)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHH
T ss_conf 99998607014520377888899999999841981577516713211899988731993089983250216688887565
Q ss_pred HH--HHHHHCCCCCC-EEEEECCCCCHHHH--HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHH--HHCC
Q ss_conf 89--98863167884-89995353408899--997122254122015788775379998579789899999898--7188
Q gi|254780947|r 763 HK--EALKETHTGVH-VLTLSATPIPRTLQ--LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREY--YRGG 835 (1187)
Q Consensus 763 ~K--e~lk~~~~~vd-vLtlsATPIPRTL~--msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl--~RgG 835 (1187)
=+ =.|-...+++= ++.||||-=|+|=+ -....|.|-..+=| =-+|--+.=-|.+.+.. ..=|.++| .|+|
T Consensus 150 Y~~L~~l~~~fp~~P~~iALTATAd~~t~~DI~~~L~L~~~~~f~~-SFdRpNl~~~v~~k~n~--~~~l~~yl~~~~~G 226 (607)
T TIGR01389 150 YRRLGELAERFPQVPTRIALTATADAETRQDIVELLRLKDANEFIS-SFDRPNLRFSVVKKNNK--KKFLLEYLKKHREG 226 (607)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHCCC--CHHHHHHHHCCCCC
T ss_conf 8999999986789866998724899878999999708898654125-67751143343120378--13689997507999
Q ss_pred EEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHH
Q ss_conf 59998264-46928899999861654648886134674789999999963887579761020036332233266762502
Q gi|254780947|r 836 QSFYVCPR-LSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRAD 914 (1187)
Q Consensus 836 Qvf~v~nr-v~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad 914 (1187)
|.=.||=. =+..|++++.|+.- ....+.=|+=|+.+.=++.-.+|..-+..|.|+|.==-.|||=||+= +|-++|
T Consensus 227 ~SGIIYa~sR~~VE~~~~~L~s~--G~~A~~YHAGL~~~~R~e~Q~~Fl~d~~~vmVAT~AFGMGIdKpnVR--FViH~d 302 (607)
T TIGR01389 227 QSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVR--FVIHAD 302 (607)
T ss_pred CCEEEECCCHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC--EEEEEC
T ss_conf 53478767704589999999747--96204036798776899997544462554888871235874787654--888636
Q ss_pred HCC-CCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 358-860455322103567673699996688
Q gi|254780947|r 915 MFG-LAQLYQLRGRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 915 ~~G-LaqlyQlrGRVGRs~~~ayayl~~~~~ 944 (1187)
+=+ |=-=||==||=||-+..|=|+|+|.+.
T Consensus 303 ~P~~~EsYYQE~GRAGRDGlpae~~lly~~~ 333 (607)
T TIGR01389 303 MPKNIESYYQEAGRAGRDGLPAEAILLYSLA 333 (607)
T ss_pred CCCCHHHHHCCCCCCCCCCCHHHHHHHCCHH
T ss_conf 8742111310355468875267786724777
No 113
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.80 E-value=0.05 Score=34.33 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=170.2
Q ss_pred HHHHHH-HHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999-99876059885---41443166543248999999987511--2754999824366555899999986067898
Q gi|254780947|r 630 QEKAID-AVIQDLSSGRL---MDRLICGDVGFGKTEIALRAAFIAVM--NGLQVAVIAPTTLLVRQHFRLFSERFQGFSV 703 (1187)
Q Consensus 630 Q~~AI~-eV~~Dmes~~P---MDRLiCGDVGfGKTEVA~RAafkav~--~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv 703 (1187)
|-.|++ .|++-.....| =-=+|--=-|-|||=--.-+|=++.. ....|.++|=..-|-.|++++|...-..-..
T Consensus 253 q~~a~~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~ 332 (962)
T COG0610 253 QYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN 332 (962)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999997126787772389840698378999999999983659996999967288999999999998876320
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCC-------CCCCCCEEEEECHHH--HHHHHHHHHHHCCCCC
Q ss_conf 3354106663025677775312257608985206542785-------202365699722233--0088899886316788
Q gi|254780947|r 704 RIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKI-------TFANLGLIIIDEEQH--FGVKHKEALKETHTGV 774 (1187)
Q Consensus 704 ~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v-------~f~~LgLliiDEEqr--FGV~~Ke~lk~~~~~v 774 (1187)
.. +..|..+-++.+++. .--|+|-|=-=+++.+ ...+==.+|+||=|| ||-.||-. |+.-++.
T Consensus 333 ~~----~~~s~~~Lk~~l~~~---~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~-~~~~~~a 404 (962)
T COG0610 333 DP----KAESTSELKELLEDG---KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL-KKALKKA 404 (962)
T ss_pred CC----CCCCHHHHHHHHHCC---CCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH-HHHHCCC
T ss_conf 44----445799999998658---984899971026433333320004787679998640103560789999-9870367
Q ss_pred CEEEEECCCCCHHHHH---HHH-----------CCCCCCEEECCCCCCCCEEEEEEECC------HHHHHH---HHHHHH
Q ss_conf 4899953534088999---971-----------22254122015788775379998579------789899---999898
Q gi|254780947|r 775 HVLTLSATPIPRTLQL---AIT-----------GVRELSLISMPPINRIACRTSISIFD------PLVVRE---TLMREY 831 (1187)
Q Consensus 775 dvLtlsATPIPRTL~m---sl~-----------g~rd~S~i~tpP~~R~~v~T~v~~~~------~~~i~~---ai~rEl 831 (1187)
...-.|.|||=-.=.- ... .|||--+..+-=..|.++..+....+ +..+.+ .+.-++
T Consensus 405 ~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (962)
T COG0610 405 IFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKI 484 (962)
T ss_pred EEEEEECCCCCCCCCCCHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08975178564022420355517447998652232357633258403123453200124566666999842279999999
Q ss_pred HHCCE--EEEEECCCCCHH---HHHHHHHH-HCCCCCEEEEECCCC----------------------H-----------
Q ss_conf 71885--999826446928---89999986-165464888613467----------------------4-----------
Q gi|254780947|r 832 YRGGQ--SFYVCPRLSDLE---KCYTFLQS-EVPELKIAMAHGQMS----------------------P----------- 872 (1187)
Q Consensus 832 ~RgGQ--vf~v~nrv~~i~---~~~~~l~~-l~p~~~i~vaHGqm~----------------------~----------- 872 (1187)
.+..+ -|.+-.-+..+. ..+.+..+ .+.+.++.+.-.-+. +
T Consensus 485 ~k~~~~~~~~~~~~~r~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 564 (962)
T COG0610 485 KKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFE 564 (962)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99875556875144889999999999998611558359999841687877678887751556665300528999861322
Q ss_pred -------------HHHHHHHHH--HHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCC--C
Q ss_conf -------------789999999--96388757976102003633223326676250235886045532210356767--3
Q gi|254780947|r 873 -------------KNLEDKMNA--FYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIA--S 935 (1187)
Q Consensus 873 -------------~~le~~m~~--F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~--a 935 (1187)
.+.++.-.. +-+-.+|+|+-+.--=||-|-|..|||-|+.- +==-.|-|==-||-|.... -
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~TmYvDK~--Lk~H~L~QAisRtNR~~~~~K~ 642 (962)
T COG0610 565 TDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDKP--LKYHNLIQAISRTNRVFPGKKK 642 (962)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCC--CCCCHHHHHHHHHCCCCCCCCC
T ss_conf 32023445577777765332321275778768999776204677542012674455--4433189999886458878888
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6999966888889889999999997255
Q gi|254780947|r 936 FALFLLPENRPLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 936 yayl~~~~~~~l~~~a~kRL~ai~~~~~ 963 (1187)
|-+.+-= . ..++.=-+|++-|++
T Consensus 643 ~G~IVDf--~---g~~e~~~~Al~~y~~ 665 (962)
T COG0610 643 FGLIVDF--R---GLKEALKKALKLYSN 665 (962)
T ss_pred CCEEEEC--C---CHHHHHHHHHHHHHH
T ss_conf 9579978--1---469999999999751
No 114
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.77 E-value=0.014 Score=38.53 Aligned_cols=302 Identities=16% Similarity=0.182 Sum_probs=148.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CC---------CCCCCCCCHHHHHCCCCCCEEEEECCC
Q ss_conf 18589999999999867982999958945899999867764-88---------733234522455204668479998104
Q gi|254780947|r 391 GGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESH-GF---------KKIKKINTLTEINSLLKEEIAAVILPI 460 (1187)
Q Consensus 391 ~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~-gI---------~~~~~~~~~~~~~~~~~~~i~i~~~~L 460 (1187)
.|+.+-.++-+.+..+.|..|+++...-+-..++.+-|.++ |. ......+.|.. ...|...+++|.=
T Consensus 197 SGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~---i~~G~~~IVIGtR 273 (699)
T PRK05580 197 SGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLA---ALRGEARVVIGTR 273 (699)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH---HHCCCCEEEEECC
T ss_conf 6079999999999997399789991767878999999998709957996488985799999999---9769971999736
Q ss_pred CCCC---CCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf 4687---4665688712-00137311122122222221101224440323511203554233112310145666663599
Q gi|254780947|r 461 NQGF---ETKHMILVTE-TDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE 536 (1187)
Q Consensus 461 ~~GF---~~~kl~vITE-~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~ 536 (1187)
+.=| .+.+++||-| +|--- +.. .....++. |..- .--..||+-...|=-+-.+.--. .
T Consensus 274 SAvFaP~~nLgLIIVDEEhd~SY----Kq~-~~Pry~AR---dvA~------~Ra~~~~~~liLgSaTPSlEs~~----~ 335 (699)
T PRK05580 274 SALFAPFKNLGLIIVDEEHDDSY----KQQ-DGPRYHAR---DVAV------LRAKQEGCPVVLGSATPSLESLA----N 335 (699)
T ss_pred CEEECCCCCCCEEEEECCCCHHH----CCC-CCCCCCHH---HHHH------HHHHHHCCCEEECCCCCCHHHHH----H
T ss_conf 01106578984899973654544----466-68761199---9999------99998499889616899999999----9
Q ss_pred EEECCCCEEEEEHHHHHHHHHHCCCCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99869987996667521111003678885323-------------43403489999999999999999999999988740
Q gi|254780947|r 537 LHYADNAKLFVPVENIDLISRYSTEITTVTLD-------------KLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIH 603 (1187)
Q Consensus 537 IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~-------------kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~ 603 (1187)
.+ .|.-++ +.+-.||++. .-|+.. .|...-|+..++..++.= .=||- -..
T Consensus 336 ~~-~g~~~~------~~l~~r~~~~-~~P~v~ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~----qvll~-----lnR 398 (699)
T PRK05580 336 AE-SGKYHL------LRLTRRAGAA-ALPRVEIIDMREEPLERGAGLSPPLLEAIREALERGE----QVLLF-----LNR 398 (699)
T ss_pred HH-CCCCEE------ECCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC----EEEEE-----ECC
T ss_conf 97-599766------4465322347-8983793354214100257546999999999997388----47999-----547
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECH
Q ss_conf 15677878467898998488888744899999998760598854144316654324899999998751127549998243
Q gi|254780947|r 604 SVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPT 683 (1187)
Q Consensus 604 ~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPT 683 (1187)
+||+-. -.|.+.-+...=. .--.-|.-.+--.+|.|-=-||-.. .-.+|-.-|- .-+.+.
T Consensus 399 rGya~~-------~~C~~Cg~~~~C~------~C~~~L~~h~~~~~l~Ch~Cg~~~~-----~~~~Cp~Cgs--~~l~~~ 458 (699)
T PRK05580 399 RGYAPF-------LLCRDCGWVARCP------HCDGPLTLHRAGRRLRCHHCGYQEP-----IPRACPECGS--TDLRAV 458 (699)
T ss_pred CCCCCE-------EECHHCCCEEECC------CCCCEEEECCCCCCEECCCCCCCCC-----CCCCCCCCCC--CCCCCC
T ss_conf 752251-------4745319945656------7898634206898332264688365-----7554656799--752411
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf 665558999999860678983354106--6630256777753122576089852065427852023656997
Q gi|254780947|r 684 TLLVRQHFRLFSERFQGFSVRIASISR--FVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII 753 (1187)
Q Consensus 684 TiLa~QH~~tf~~Rf~~~pv~i~~lsR--f~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii 753 (1187)
.+=.++-.+...+-|.+.| |..+++ .+++...+++++++.+|++||+|||. ++.|.-.|.+++|++|
T Consensus 459 g~Gteri~eel~~~FP~~~--i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTq-miakG~df~~v~lv~v 527 (699)
T PRK05580 459 GVGTERTEEELARLFPGAR--VLRIDRDTTRRKGALEQLLEDFARGEADILVGTQ-MLAKGHDFPNVTLVGV 527 (699)
T ss_pred CHHHHHHHHHHHHHCCCCC--EEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCC-CCCCCCCCCCEEEEEE
T ss_conf 1685999999997789998--8998475567863168899997468987897773-3455677776269987
No 115
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.68 E-value=0.017 Score=37.93 Aligned_cols=119 Identities=13% Similarity=0.302 Sum_probs=86.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHH--------HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH
Q ss_conf 8541443166543248999999987511275499982436--------65558999999860678983354106663025
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTT--------LLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTT--------iLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e 716 (1187)
+|---.+.-+-.+.+---.||.+ +..|+||-++||-- --|..-|+..+.-|.++ +|+++--=-+++|
T Consensus 447 kpI~T~~i~~~~~~~v~e~i~~e---i~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~--~vgL~HGrm~~~e 521 (677)
T COG1200 447 KPITTVVIPHERRPEVYERIREE---IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPEL--KVGLVHGRMKPAE 521 (677)
T ss_pred CCEEEEEECCCCHHHHHHHHHHH---HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHH
T ss_conf 74089996444479999999999---974997999952535433113654999999999870546--3677756898677
Q ss_pred HHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 67777531225760898520654278520236569972223300888998863
Q gi|254780947|r 717 AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKE 769 (1187)
Q Consensus 717 ~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~ 769 (1187)
+.+|.+.+++|++||+|-|- +.-=.|.-.|.-+.||..-.|||..|=..|+-
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTT-VIEVGVdVPnATvMVIe~AERFGLaQLHQLRG 573 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATT-VIEVGVDVPNATVMVIENAERFGLAQLHQLRG 573 (677)
T ss_pred HHHHHHHHHCCCCCEEEEEE-EEEECCCCCCCEEEEEECHHHHHHHHHHHHCC
T ss_conf 99999999808876899813-89952357887079996543303788887526
No 116
>KOG0329 consensus
Probab=96.67 E-value=0.0095 Score=39.92 Aligned_cols=254 Identities=23% Similarity=0.307 Sum_probs=146.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH--CCC-CEEEEEECHHHHHHHHHHHHHHHHCCCC--CCEEEECCCCCCHHHHH
Q ss_conf 854144316654324899999998751--127-5499982436655589999998606789--83354106663025677
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAV--MNG-LQVAVIAPTTLLVRQHFRLFSERFQGFS--VRIASISRFVQTKEAAL 719 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav--~~g-kQvavlvPTTiLa~QH~~tf~~Rf~~~p--v~i~~lsRf~~~~e~~~ 719 (1187)
--||-|--.--|.|||-|-.-|..--. .+| --|.|+|-|.=||.|--+.+ +||+.|- |+|++.--=.+-|.-.+
T Consensus 78 lgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey-~rfskymP~vkvaVFfGG~~Ikkdee 156 (387)
T KOG0329 78 LGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEY-ERFSKYMPSVKVSVFFGGLFIKKDEE 156 (387)
T ss_pred HCCHHHEECCCCCCCEEEEEHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHH-HHHHHHCCCCEEEEEECCEECCCCHH
T ss_conf 34112010025788436552223552378898079999962189999988999-99975488845899975531034699
Q ss_pred HHHHHCCCCCEEEEECH-HHH----CCCCCCCCCCEEEEECHHHH------HHHHHHHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 77531225760898520-654----27852023656997222330------08889988631678848999535340889
Q gi|254780947|r 720 HKKSITEGQVDIVIGTH-ALL----NPKITFANLGLIIIDEEQHF------GVKHKEALKETHTGVHVLTLSATPIPRTL 788 (1187)
Q Consensus 720 i~~~l~~G~idiviGTH-~ll----~~~v~f~~LgLliiDEEqrF------GV~~Ke~lk~~~~~vdvLtlsATPIPRTL 788 (1187)
.++. .-.||+||- |+| ++.+..|+.--.|+||=-+. --..-|-.|..-..--|...|||-=-
T Consensus 157 ~lk~----~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlsk--- 229 (387)
T KOG0329 157 LLKN----CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK--- 229 (387)
T ss_pred HHHC----CCEEEECCCHHHHHHHHHCCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCH---
T ss_conf 8827----990897682889999872457532032112333778999878888799986328653203454201315---
Q ss_pred HHHHHCCCCCCEEECCCCCCC----CEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCC--CCC
Q ss_conf 999712225412201578877----53799985797898999998987188599982644692889999986165--464
Q gi|254780947|r 789 QLAITGVRELSLISMPPINRI----ACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVP--ELK 862 (1187)
Q Consensus 789 ~msl~g~rd~S~i~tpP~~R~----~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p--~~~ 862 (1187)
+ .-|.-|. |...||-.--.- .--|=|-|||-=.=..-. .++-.|+- |-+
T Consensus 230 --------e-----iRpvC~kFmQdPmEi~vDdE~KL---------tLHGLqQ~YvkLke~eKN---rkl~dLLd~LeFN 284 (387)
T KOG0329 230 --------E-----IRPVCHKFMQDPMEIFVDDEAKL---------TLHGLQQYYVKLKENEKN---RKLNDLLDVLEFN 284 (387)
T ss_pred --------H-----HHHHHHHHHCCCHHHHCCCHHHH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_conf --------6-----67887755218166502415655---------333477877766555543---5666565454412
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHH-HHCCCCCCCCEEEEEE
Q ss_conf 888613467478999999996388757976102003633223326676250235886045532-2103567673699996
Q gi|254780947|r 863 IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLR-GRVGRSKIASFALFLL 941 (1187)
Q Consensus 863 i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlr-GRVGRs~~~ayayl~~ 941 (1187)
-.|..-+--.+ +.| +++ ||+|...--|+||-++|- +-|-|+=-=|.-|-.| ||-||-..++-|.-++
T Consensus 285 QVvIFvKsv~R------l~f-~kr---~vat~lfgrgmdiervNi--~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfv 352 (387)
T KOG0329 285 QVVIFVKSVQR------LSF-QKR---LVATDLFGRGMDIERVNI--VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 352 (387)
T ss_pred CEEEEEEHHHH------HHH-HHH---HHHHHHHCCCCCCCCCEE--EECCCCCCCCHHHHHHHHHHHCCCCCCCEEEHH
T ss_conf 04676203445------556-666---677664046667332202--322689887127888762430356555201000
Q ss_pred CC
Q ss_conf 68
Q gi|254780947|r 942 PE 943 (1187)
Q Consensus 942 ~~ 943 (1187)
..
T Consensus 353 s~ 354 (387)
T KOG0329 353 SD 354 (387)
T ss_pred CC
T ss_conf 11
No 117
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=96.62 E-value=0.01 Score=39.62 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 65432489999999875112754999824366555899999986067898335410666302567777531225760898
Q gi|254780947|r 654 DVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVI 733 (1187)
Q Consensus 654 DVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idivi 733 (1187)
--|=|||=||-=+|+..+..||.|-|+..---||+--.+-+..=|+-++++|++...=.++.+.++.. ..||+-
T Consensus 98 ~TGEGKTL~atl~a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~LGLsvg~i~~~~~~~err~aY------~~DItY 171 (381)
T pfam07517 98 KTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAY------NCDITY 171 (381)
T ss_pred ECCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH------HCCCEE
T ss_conf 76998119999999999737997489975888868899997999998486054227889848889875------166055
Q ss_pred ECHHHHC
Q ss_conf 5206542
Q gi|254780947|r 734 GTHALLN 740 (1187)
Q Consensus 734 GTH~ll~ 740 (1187)
||..=|.
T Consensus 172 gTn~e~g 178 (381)
T pfam07517 172 GTNSELG 178 (381)
T ss_pred CCHHHHH
T ss_conf 0322321
No 118
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.52 E-value=0.0034 Score=43.40 Aligned_cols=153 Identities=19% Similarity=0.249 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC----CEEEEEECHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 899999998760598854144316654324899999998751127----5499982436655589999998606789833
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG----LQVAVIAPTTLLVRQHFRLFSERFQGFSVRI 705 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g----kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i 705 (1187)
|.+.. .-+.++.....+.|.++.|.|.|||-=++...--....+ +-+-++||+.++.+=-=+. ++|.+.=..
T Consensus 343 q~~g~-~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~--~k~~~~~~~- 418 (866)
T COG0553 343 QLEGV-NWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREF--EKFAPDLRL- 418 (866)
T ss_pred HHHHH-HHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHH--HHHCCHHHH-
T ss_conf 99866-99999877623687757523342199999998777764013578726871477776799999--861412100-
Q ss_pred EEECCCCCCHH---HHHHHHHHCCC----CCEEEEECHHHHCC---CCC-CC--CCCEEEEECHHHHHHHHH---HHHHH
Q ss_conf 54106663025---67777531225----76089852065427---852-02--365699722233008889---98863
Q gi|254780947|r 706 ASISRFVQTKE---AALHKKSITEG----QVDIVIGTHALLNP---KIT-FA--NLGLIIIDEEQHFGVKHK---EALKE 769 (1187)
Q Consensus 706 ~~lsRf~~~~e---~~~i~~~l~~G----~idiviGTH~ll~~---~v~-f~--~LgLliiDEEqrFGV~~K---e~lk~ 769 (1187)
++....+..+ ..+.+.++... ..|++|-|=..|.+ |.. ++ .-+.+|+||.|+--=.+- ..++.
T Consensus 419 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~ 497 (866)
T COG0553 419 -VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQF 497 (866)
T ss_pred -HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf -2321153112103699999998621330101899999999975020554223677698997887540477899999998
Q ss_pred CCCCCCEEEEECCCCCHHH
Q ss_conf 1678848999535340889
Q gi|254780947|r 770 THTGVHVLTLSATPIPRTL 788 (1187)
Q Consensus 770 ~~~~vdvLtlsATPIPRTL 788 (1187)
++.... +-||.|||+--|
T Consensus 498 ~~~~~~-~~LtgTPlen~l 515 (866)
T COG0553 498 LKALNR-LDLTGTPLENRL 515 (866)
T ss_pred HHHHHH-HHCCCCCHHHHH
T ss_conf 755433-228999645608
No 119
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.51 E-value=0.025 Score=36.72 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH------HHHCCC--CCCEEEEECCCCCC
Q ss_conf 8589999999999867982999958945899999867764887332345224------552046--68479998104468
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLT------EINSLL--KEEIAAVILPINQG 463 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~------~~~~~~--~~~i~i~~~~L~~G 463 (1187)
.+++.+.+.|+++..+|.+++++|.+....+.+.+.|.+.+++......... ....+. ...+.++..-++.|
T Consensus 12 ~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEECCEEC
T ss_conf 99999999999999789909999788999999999995589989999899999999999999775401048875112003
Q ss_pred CCCC--CEEEEEC
Q ss_conf 7466--5688712
Q gi|254780947|r 464 FETK--HMILVTE 474 (1187)
Q Consensus 464 F~~~--kl~vITE 474 (1187)
...+ +.+++-+
T Consensus 92 ldl~~~~~vI~~~ 104 (131)
T cd00079 92 IDLPNVSVVINYD 104 (131)
T ss_pred CCCCCCCEEEEEC
T ss_conf 6610287999978
No 120
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=96.42 E-value=0.0036 Score=43.16 Aligned_cols=137 Identities=18% Similarity=0.321 Sum_probs=86.9
Q ss_pred HHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCC-EEEEEHHHHHHHHHH-CCCCC--CCCCCCC------
Q ss_conf 4403235112035542331123101456666635999986998-799666752111100-36788--8532343------
Q gi|254780947|r 501 SNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNA-KLFVPVENIDLISRY-STEIT--TVTLDKL------ 570 (1187)
Q Consensus 501 ~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~D-kLYVPv~~l~lIskY-g~~~~--~p~L~kL------ 570 (1187)
...++||.||=--||+|.-.+|+..++.|-..+|.+|.+.-+| .+-||+++.+.+-== ..+.+ .--++-|
T Consensus 3 ~~FkiGd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~~GlR~v~~~~~l~~~~~vlq~~~~e 82 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADSVGLRPVVDQEELDRALQVLQGGERE 82 (166)
T ss_pred CCCCCCCEEEECCCCCEEEEHHHHHHHCCCEEEEEEEEECCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 63427998883587665300566776258524899999737882898564515542773332367799999998446755
Q ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHCCCCC--CHHHHHH-HHHHH
Q ss_conf 403489999999999-----9999999999999887401567787846789899----8488888--7448999-99998
Q gi|254780947|r 571 GGSAWKTRKANLKKR-----LEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFI----KRFPHVE--TEDQEKA-IDAVI 638 (1187)
Q Consensus 571 Gg~~W~k~K~Kakk~-----v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe----~~FpyeE--T~DQ~~A-I~eV~ 638 (1187)
+-..|+++.+-.-.. +.++|. ++.=-.+|+..++.+++.- .+++.+. ..-...| ++-+..+ |.++.
T Consensus 83 ~~~~ws~R~k~~~~klksGdi~~~Ae-vvrdL~r~~~qr~l~~~Er-~ll~~A~~~l~~Ela~~e~i~~~ea~~~l~~~l 160 (166)
T COG1329 83 KPTMWSRRYKENEEKLKSGDIIDIAE-VVRDLYRRDKQRELSYSER-RLLEKALQILAGELALAEGISEEEAKTFLDEVL 160 (166)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 65537899998887761477378999-9999998640558996899-999999999999999995599999999999975
Q ss_pred H
Q ss_conf 7
Q gi|254780947|r 639 Q 639 (1187)
Q Consensus 639 ~ 639 (1187)
.
T Consensus 161 ~ 161 (166)
T COG1329 161 A 161 (166)
T ss_pred H
T ss_conf 5
No 121
>PRK08116 hypothetical protein; Validated
Probab=96.41 E-value=0.061 Score=33.69 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=55.7
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HCCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 0156778784678989984888887448999999987---6059--8854144316654324899999998751127549
Q gi|254780947|r 603 HSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQ---DLSS--GRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQV 677 (1187)
Q Consensus 603 ~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~---Dmes--~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQv 677 (1187)
....++-++.-+...|++ |..++.|.+|.+-.++ ..+. ..+--=|++|++|-|||-.|.-.|=.++..|+.|
T Consensus 63 l~~~s~i~~~f~~~tFeN---~~~~~~~~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V 139 (262)
T PRK08116 63 LISNSLLDEKFRNSTFEN---WLFRKGSEKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPV 139 (262)
T ss_pred HHHHCCCCHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 998659998898192225---56895259999999999998987364686189989899989999999999999879939
Q ss_pred EEEECHHHHH
Q ss_conf 9982436655
Q gi|254780947|r 678 AVIAPTTLLV 687 (1187)
Q Consensus 678 avlvPTTiLa 687 (1187)
.+.-=..+|.
T Consensus 140 ~~~~~~~ll~ 149 (262)
T PRK08116 140 VFVNVPELLN 149 (262)
T ss_pred EEEEHHHHHH
T ss_conf 9988999999
No 122
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.38 E-value=0.1 Score=31.96 Aligned_cols=96 Identities=26% Similarity=0.241 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 48999999987605988541443166543248999999987511275499982436655589999998606789833541
Q gi|254780947|r 629 DQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASI 708 (1187)
Q Consensus 629 DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~l 708 (1187)
.|...+..++.-+..+.|--=|+||-.|-|||-+|.+.|--....+.-+..+-.+++...-........+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF---------- 71 (151)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH----------
T ss_conf 8579999999998187998089989999886599999999712137982785477704677775760577----------
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHH
Q ss_conf 0666302567777531225760898520654278520236569972223300
Q gi|254780947|r 709 SRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFG 760 (1187)
Q Consensus 709 sRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFG 760 (1187)
..........-...+.|+|||=++++
T Consensus 72 --------------------------~~~~~~~~~~~~~~~vl~iDEi~~l~ 97 (151)
T cd00009 72 --------------------------LVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred --------------------------HHHHHHHHHHHCCCCEEEEECHHHCC
T ss_conf --------------------------88989999997699869820166559
No 123
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=96.34 E-value=0.045 Score=34.71 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCEEEECCCCCCHHHHHHH--HH---HHC--CCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 8608980376522799999--99---862--998999929989999999999985799
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILA--EI---ARL--GLSLVYICSDERILINLKKILTLVVPD 65 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla--~l---~~~--~rpilvI~~d~~~A~~l~~dL~~f~~~ 65 (1187)
++++.+..-+|++|++++. .+ .+. +..+++++|...-+.+.++.+..++..
T Consensus 14 g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~ 71 (167)
T pfam00270 14 GKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKY 71 (167)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 9978998899975899999999999874778987999906088888999886432102
No 124
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.31 E-value=0.037 Score=35.37 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHHHHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999751146089626753222246-7337764146656682001001122220001858999999999986798299995
Q gi|254780947|r 337 FDALIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISA 415 (1187)
Q Consensus 337 l~~ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a 415 (1187)
+.....-+.++.-++.....+... .....+.....+...|......+..--.....++..+++++....+.|.+|+|-+
T Consensus 358 ~Qn~Fr~y~klsGMTGTa~te~~Ef~~iY~l~V~~IPtn~p~~R~d~~d~iy~t~~~K~~ai~~ei~~~~~~gqPvLvGT 437 (833)
T PRK12904 358 FQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGT 437 (833)
T ss_pred HHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98898327551356778677899999986887698589998543608870207999999999999999997699789942
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC----CCCHHH--HHCCCCCCEEEEECCCCCC
Q ss_conf 89458999998677648873323----452245--5204668479998104468
Q gi|254780947|r 416 SSQGALQHLIHLIESHGFKKIKK----INTLTE--INSLLKEEIAAVILPINQG 463 (1187)
Q Consensus 416 ~s~~~~eRL~elL~e~gI~~~~~----~~~~~~--~~~~~~~~i~i~~~~L~~G 463 (1187)
.|-...|.|+.+|...||+...- ...-++ ...-.+|.|.+..-=-.+|
T Consensus 438 ~sve~SE~ls~~L~~~~i~h~vLNAk~~~~EA~Iia~AG~~gaVTiATNMAGRG 491 (833)
T PRK12904 438 TSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGAVTIATNMAGRG 491 (833)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 747989999999987378277617736666889999559999768740256788
No 125
>KOG0948 consensus
Probab=96.28 E-value=0.025 Score=36.69 Aligned_cols=324 Identities=22% Similarity=0.281 Sum_probs=215.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 98488888744899999998760598854144316654324899999998751127549998243665558999999860
Q gi|254780947|r 619 IKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERF 698 (1187)
Q Consensus 619 e~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf 698 (1187)
...+||+.-|=|..||.-|-+ +|| -||.----=|||-||=-|.-++--+.--|.+--|---|+.|.|+-|.+-|
T Consensus 123 Ak~YPF~LDpFQ~~aI~Cidr-~eS-----VLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948 123 AKTYPFTLDPFQSTAIKCIDR-GES-----VLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCCCCCCCCCHHHHHHHHHCC-CCE-----EEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHCCHHHHHHHHHH
T ss_conf 357884348067654531127-963-----89984057885237999999998764858960731554115489999884
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHC-----CCCCCCCCCEEEEECHHHH-----HHHHHHHHH
Q ss_conf 678983354106663025677775312257608985206542-----7852023656997222330-----088899886
Q gi|254780947|r 699 QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN-----PKITFANLGLIIIDEEQHF-----GVKHKEALK 768 (1187)
Q Consensus 699 ~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~-----~~v~f~~LgLliiDEEqrF-----GV~~Ke~lk 768 (1187)
++-+.--+-.+=- -..--+|=|.-+|- ..=.-+..+-+|.||=|-- ||---|-|-
T Consensus 197 ~DVGLMTGDVTIn---------------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948 197 KDVGLMTGDVTIN---------------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred CCCCEEECCEEEC---------------CCCCEEEEHHHHHHHHHHCCCHHHHEEEEEEEEEEHHCCCCCCCEEEEEEEE
T ss_conf 6365230544668---------------9875453379999998743316755231488620010013445602356678
Q ss_pred HCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCC-------CCCCEEEEEEE---------------CCHHHHHHH
Q ss_conf 31678848999535340889999712225412201578-------87753799985---------------797898999
Q gi|254780947|r 769 ETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPI-------NRIACRTSISI---------------FDPLVVRET 826 (1187)
Q Consensus 769 ~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~-------~R~~v~T~v~~---------------~~~~~i~~a 826 (1187)
-|-.+|...-|||| ||-.++.|= =++-|..-|- .--|.|-|+-+ |.+.-...|
T Consensus 262 llP~~vr~VFLSAT-iPNA~qFAe----WI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~a 336 (1041)
T KOG0948 262 LLPDNVRFVFLSAT-IPNARQFAE----WICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKA 336 (1041)
T ss_pred ECCCCCEEEEEECC-CCCHHHHHH----HHHHHHCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 53666038999565-877799999----9999755874289505878864144530799806999705664226779999
Q ss_pred HHHHHH--------------HCCEEE--------------------------EEECC-----------------------
Q ss_conf 998987--------------188599--------------------------98264-----------------------
Q gi|254780947|r 827 LMREYY--------------RGGQSF--------------------------YVCPR----------------------- 843 (1187)
Q Consensus 827 i~rEl~--------------RgGQvf--------------------------~v~nr----------------------- 843 (1187)
..-=-. |.|+++ |-.-|
T Consensus 337 m~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~ 416 (1041)
T KOG0948 337 MSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKEL 416 (1041)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99763257786444555445657767889874319999999996268966999814767999997651576788568889
Q ss_pred CCCHHH-----------HHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEE
Q ss_conf 469288-----------999998616546--4888613467478999999996388757976102003633223326676
Q gi|254780947|r 844 LSDLEK-----------CYTFLQSEVPEL--KIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIV 910 (1187)
Q Consensus 844 v~~i~~-----------~~~~l~~l~p~~--~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii 910 (1187)
|++|.. ---.++.++|=. -|||-|+-+=+---|-|=.=|-+|=+-+|.+|-----||.+| |-|.+-
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvF 495 (1041)
T KOG0948 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVF 495 (1041)
T ss_pred HHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEE
T ss_conf 9999999998548533155178888999873554344550478999999998502798877541231005886-405887
Q ss_pred ECHHHCCCC--------HHHHHHHHCCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 250235886--------0455322103567--6736999966888889889999999997255652489999
Q gi|254780947|r 911 QRADMFGLA--------QLYQLRGRVGRSK--IASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLAS 972 (1187)
Q Consensus 911 ~~ad~~GLa--------qlyQlrGRVGRs~--~~ayayl~~~~~~~l~~~a~kRL~ai~~~~~lGsGf~iA~ 972 (1187)
-.+.+|-=. .--|+-||-||.+ .++-|-+++.. .++...-|++- --+-+.|-|-|.|.-
T Consensus 496 T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe--km~~~~ak~m~-kG~aD~LnSaFhLtY 564 (1041)
T KOG0948 496 TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE--KMEPQVAKDML-KGSADPLNSAFHLTY 564 (1041)
T ss_pred EECCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEECC--CCCHHHHHHHH-CCCCCCHHHHHHHHH
T ss_conf 4011147864045336635774153455677877529999567--67978999986-388741053664579
No 126
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.037 Score=35.40 Aligned_cols=369 Identities=14% Similarity=0.161 Sum_probs=184.2
Q ss_pred HCCCHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHH------CCCCCCCCCCCHHHHHCCCCCCEEEEECC
Q ss_conf 018589999999999867982999958----94589999986776------48873323452245520466847999810
Q gi|254780947|r 390 SGGRFDKFLSHVAQQAQKGIKTIISAS----SQGALQHLIHLIES------HGFKKIKKINTLTEINSLLKEEIAAVILP 459 (1187)
Q Consensus 390 ~~g~l~~L~~~I~~~~k~g~rViI~a~----s~~~~eRL~elL~e------~gI~~~~~~~~~~~~~~~~~~~i~i~~~~ 459 (1187)
-.|+.+-+++-|.+...+|..+++... +....+|+...|.. .++......+.|..+ ..|...+++|.
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~---~~G~~~vVIGt 303 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRA---RRGEARVVIGT 303 (730)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH---HCCCCEEEEEE
T ss_conf 885899999999999975987999956534569999999998678745314657927899999998---55971599971
Q ss_pred CCCCC---CCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf 44687---466568871-20013731112212222222110122444032351120355423311231014566666359
Q gi|254780947|r 460 INQGF---ETKHMILVT-ETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCL 535 (1187)
Q Consensus 460 L~~GF---~~~kl~vIT-E~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL 535 (1187)
=+.=| ..-+++||- |+|--=++ ......++..+.- +.-..+++-.-.|=.+-.+....+=
T Consensus 304 RSAlF~Pf~~LGLIIvDEEHD~sYKq-----~~~prYhARdvA~---------~Ra~~~~~pvvLgSATPSLES~~~~-- 367 (730)
T COG1198 304 RSALFLPFKNLGLIIVDEEHDSSYKQ-----EDGPRYHARDVAV---------LRAKKENAPVVLGSATPSLESYANA-- 367 (730)
T ss_pred CHHHCCCHHHCCEEEEECCCCCCCCC-----CCCCCCCHHHHHH---------HHHHHCCCCEEEECCCCCHHHHHHH--
T ss_conf 22330723125769970245643247-----7777767899999---------9988609988982688778999866--
Q ss_pred EEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----HCC
Q ss_conf 9998699879966675211110036788853234340348999999999999999999999-----998874-----015
Q gi|254780947|r 536 ELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI-----AAKRAI-----HSV 605 (1187)
Q Consensus 536 ~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~l-----yA~R~~-----~~g 605 (1187)
..| ....+.+-.||+ ....|..+-+.=..-.....+. +...|++- .+..++ .+|
T Consensus 368 ----~~g-----~y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~------lS~~Ll~~i~~~l~~geQ~llflnRRG 431 (730)
T COG1198 368 ----ESG-----KYKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRS------LSPALLEAIRKTLERGEQVLLFLNRRG 431 (730)
T ss_pred ----HCC-----CEEEEECCCCCC-CCCCCCCEEEECCCCCCCCCCC------CCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf ----538-----558997035455-5678762587356665546775------799999999999842986899971677
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 67787846789899848888874489999999876059885414431665432489999999875112754999824366
Q gi|254780947|r 606 PPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTL 685 (1187)
Q Consensus 606 ~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTi 685 (1187)
|+.. -.|.+..|..+=-+=.. -|.=.+--..|.|==.|+=+ +-.+.|-.-|-+ .|++..+
T Consensus 432 ys~~-------l~C~~Cg~v~~Cp~Cd~------~lt~H~~~~~L~CH~Cg~~~-----~~p~~Cp~Cgs~--~L~~~G~ 491 (730)
T COG1198 432 YAPL-------LLCRDCGYIAECPNCDS------PLTLHKATGQLRCHYCGYQE-----PIPQSCPECGSE--HLRAVGP 491 (730)
T ss_pred CCCE-------EECCCCCCCCCCCCCCC------CEEEECCCCEEEECCCCCCC-----CCCCCCCCCCCC--EEEEECC
T ss_conf 6540-------04256898024899995------12786479806707799989-----988779899997--3699646
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCC--HHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE-ECHHHHH--
Q ss_conf 55589999998606789833541066630--256777753122576089852065427852023656997-2223300--
Q gi|254780947|r 686 LVRQHFRLFSERFQGFSVRIASISRFVQT--KEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII-DEEQHFG-- 760 (1187)
Q Consensus 686 La~QH~~tf~~Rf~~~pv~i~~lsRf~~~--~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii-DEEqrFG-- 760 (1187)
=+|+-.+....-|.+.| |..+++=.|. ..-+..+..+..|++||+|||.- +.|.-.|.|++|+.| |=--=.+
T Consensus 492 GterieeeL~~~FP~~r--v~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQm-iaKG~~fp~vtLVgvl~aD~~L~~~ 568 (730)
T COG1198 492 GTERIEEELKRLFPGAR--IIRIDSDTTRRKGALEDLLDQFANGEADILIGTQM-IAKGHDFPNVTLVGVLDADTGLGSP 568 (730)
T ss_pred CHHHHHHHHHHHCCCCC--EEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHH-HHCCCCCCCCEEEEEEECHHHHCCC
T ss_conf 19999999998789994--79984666664356899999975799886634166-6427886663189999631431588
Q ss_pred -HHHHHHHHHCC-----------CCCCEEEEECCCCCHHHHHHHHCC------CCCC---EEECCCCCCCCEEEEEE
Q ss_conf -88899886316-----------788489995353408899997122------2541---22015788775379998
Q gi|254780947|r 761 -VKHKEALKETH-----------TGVHVLTLSATPIPRTLQLAITGV------RELS---LISMPPINRIACRTSIS 816 (1187)
Q Consensus 761 -V~~Ke~lk~~~-----------~~vdvLtlsATPIPRTL~msl~g~------rd~S---~i~tpP~~R~~v~T~v~ 816 (1187)
-+.-|+.=++- ..--|+-=|+.|===+++..+.+= ++|. ...-||-.|+..-++-.
T Consensus 569 DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~ 645 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIASA 645 (730)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHEEEEECC
T ss_conf 84357899999999975532678898699996799857999998669999999999988861899706544667337
No 127
>PRK13766 Hef nuclease; Provisional
Probab=96.17 E-value=0.053 Score=34.18 Aligned_cols=92 Identities=7% Similarity=0.178 Sum_probs=53.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH-----HCCCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCHHCCCCCHHH
Q ss_conf 608980376522799999998-----6299899992998999999999998579--980998572246701004899899
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA-----RLGLSLVYICSDERILINLKKILTLVVP--DIRVIIFPAWDCLPYDRVSPSPYV 88 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~-----~~~rpilvI~~d~~~A~~l~~dL~~f~~--~~~V~~FP~~E~LPYd~~sp~~di 88 (1187)
++..+.=-+|++|+++++-+. ..++.+++++|+..-+.|-++.+.-+++ ...|..+- ...+|.
T Consensus 30 ~NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~lt-------G~~~~~--- 99 (764)
T PRK13766 30 GNTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLT-------GEISPE--- 99 (764)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE-------CCCCHH---
T ss_conf 8989995998668999999999999748988999858888999999999997099955289998-------887827---
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH----CCCCCHHHH
Q ss_conf 9999999999841244688769995667852----369986688
Q gi|254780947|r 89 VTRRLSCISNLVSFNSSKETIIVLTTVSAVM----CRSVNIMSI 128 (1187)
Q Consensus 89 ~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALl----qklpp~~~l 128 (1187)
+|-+. + .+..|+|+|+.-+. ....+.+.+
T Consensus 100 --~r~~~-w--------~~~~Viv~TPQvl~ndL~~g~i~l~dv 132 (764)
T PRK13766 100 --KRAAL-W--------EKAKVIVATPQVIENDLLAGRISLEDV 132 (764)
T ss_pred --HHHHH-H--------CCCCEEEECCHHHHHHHHHCCCCHHHC
T ss_conf --68998-6--------079999999089999998298678882
No 128
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.15 E-value=0.043 Score=34.90 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=119.7
Q ss_pred CCCHHCCCCHHHHHHHHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf 850211699899999751146089626753222246-7337764146656682001001122220001858999999999
Q gi|254780947|r 325 IAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQ 403 (1187)
Q Consensus 325 l~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~ 403 (1187)
+.++..-+..-.+...+.-+.++.-++.....+..+ ..+..+.....+...|.........--.....++..+++++.+
T Consensus 404 I~~e~qTlAsIT~QnfFR~Y~kLsGMTGTA~tea~Ef~~iY~L~Vv~IPTnrP~~R~D~~D~vy~t~~~K~~Aii~ei~~ 483 (673)
T PRK12898 404 LTDPRETLARITFQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRIVLPTEVFLTLAAKWAAVAARVRE 483 (673)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCEECCCEEECCHHHHHHHHHHHHHH
T ss_conf 78312356643499999856174057778575799999975997698689997301237985856999999999999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCC----CCHHHH--HCCCCCCEEEEECCCCCCC--------C-CCC
Q ss_conf 986798299995894589999986776488733234----522455--2046684799981044687--------4-665
Q gi|254780947|r 404 QAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKI----NTLTEI--NSLLKEEIAAVILPINQGF--------E-TKH 468 (1187)
Q Consensus 404 ~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~----~~~~~~--~~~~~~~i~i~~~~L~~GF--------~-~~k 468 (1187)
..+.|..|+|-+.|-...|.|+.+|...||+...-. ...+++ ..-.++.|.+..-=-.+|= . .-.
T Consensus 484 ~~~~GqPVLVGT~SVe~SE~lS~~L~~~gi~h~VLNAk~~~~EA~IIA~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GG 563 (673)
T PRK12898 484 LHASGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPEVAARGG 563 (673)
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHCCC
T ss_conf 98679988998375899999999999869975664786668799999943999987970236789868476767886289
Q ss_pred EEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 6887-120013731112212222222110122444032351120355423311231014566666359999869987996
Q gi|254780947|r 469 MILV-TETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFV 547 (1187)
Q Consensus 469 l~vI-TE~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~DkLYV 547 (1187)
+.|| ||.- -.+|--+ +-.+..= .-||+ |..+=||.+|=. ==++|-
T Consensus 564 LhVIgTerh-----eSrRIDn--QLrGRsG------RQGDP--------------------Gss~f~lSleDd-L~r~f~ 609 (673)
T PRK12898 564 LHVILTERH-----ESARIDR--QLAGRCG------RQGDP--------------------GSSEAILSLEDD-LLQQFL 609 (673)
T ss_pred CEEEECCCC-----CHHHHHH--HHHCCCC------CCCCC--------------------CCEEEEEEECHH-HHHHHC
T ss_conf 889843755-----1124565--6423544------68999--------------------851489981467-898757
Q ss_pred EHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6675211110036788853234340348999999999999999999999998
Q gi|254780947|r 548 PVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAK 599 (1187)
Q Consensus 548 Pv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~ 599 (1187)
+-.--.+..+.+-+...|--+++.+..-.++-+|+...-.++-..|++---.
T Consensus 610 ~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~kvE~~nf~~Rk~ll~yD~v 661 (673)
T PRK12898 610 PLLGRGIARALAAAQGPGLSRGLGAALLRSAQRRAERRHARARRQLLHADEQ 661 (673)
T ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0999999998189999841108999999999999999859999888778999
No 129
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=96.06 E-value=0.037 Score=35.36 Aligned_cols=47 Identities=15% Similarity=0.365 Sum_probs=40.8
Q ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 00185899999999998679829999589458999998677648873
Q gi|254780947|r 389 ESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 389 ~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
....++..+++++..+.+.|.+|++-+.|-...|.|+++|...||+.
T Consensus 421 t~~~K~~Ai~~ei~~~~~~gqPvLvGT~SVe~SE~ls~~L~~~gi~h 467 (823)
T PRK12906 421 TLDSKFNAVVDDIKERHAKGQPVLVGTVSIESSERLSQLLDKAGIPH 467 (823)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999998679988997175899999999999768703
No 130
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.98 E-value=0.077 Score=32.91 Aligned_cols=88 Identities=8% Similarity=0.116 Sum_probs=54.8
Q ss_pred CCEEEECCCCCCHHHHHHH--HHHH---C-CC-CEEEEECCHHHHHHHHHHHHHHCCC---CEEEECCCCCCCCHHCCCC
Q ss_conf 8608980376522799999--9986---2-99-8999929989999999999985799---8099857224670100489
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILA--EIAR---L-GL-SLVYICSDERILINLKKILTLVVPD---IRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla--~l~~---~-~r-pilvI~~d~~~A~~l~~dL~~f~~~---~~V~~FP~~E~LPYd~~sp 84 (1187)
++.+.+.-=+||+|++..+ .|.+ . .. -+|||||+-.-|.|.++.+..|... ..|..+ |...+.
T Consensus 43 GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v~~l-------~GG~~~ 115 (629)
T PRK11634 43 GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVAL-------YGGQRY 115 (629)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE-------ECCCCH
T ss_conf 9988997888478999999999998662368986899789989999999999999721799779999-------899778
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 98999999999999841244688769995667852369
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
+. . +..|. ..+.|||+|+.-|+..+
T Consensus 116 ~~-----q---~~~L~-----~g~~IVVgTPGRL~d~l 140 (629)
T PRK11634 116 DV-----Q---LRALR-----QGPQIVVGTPGRLLDHL 140 (629)
T ss_pred HH-----H---HHHHC-----CCCCEEEECHHHHHHHH
T ss_conf 99-----9---99862-----79999996989999999
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.92 E-value=0.052 Score=34.21 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=59.2
Q ss_pred HHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf 751146089626753222246-7337764146656682001001122220001858999999999986798299995894
Q gi|254780947|r 340 LIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQ 418 (1187)
Q Consensus 340 ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~ 418 (1187)
...-+.++.-++.....+... .....+...+.+...|......+..--.....++..+++++....+.|.+|++-+.|-
T Consensus 355 ~Fr~y~klsGMTGTA~te~~Ef~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SV 434 (891)
T CHL00122 355 FFLLYPKLSGMTGTAKTEEVELEKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSV 434 (891)
T ss_pred HHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 98545042267567687899999985884798899998500308895778899999999999999996799989834655
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 589999986776488733
Q gi|254780947|r 419 GALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 419 ~~~eRL~elL~e~gI~~~ 436 (1187)
...|.|+.+|.++||+..
T Consensus 435 e~SE~ls~~L~~~gi~h~ 452 (891)
T CHL00122 435 EKSELLSQLLEEYQLPHN 452 (891)
T ss_pred HHHHHHHHHHHHCCCCCH
T ss_conf 889999999997478622
No 132
>PRK02362 ski2-like helicase; Provisional
Probab=95.91 E-value=0.03 Score=36.04 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=42.6
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HH---HCCCCEEEEECCHHHHHHHHHHHHHHCC-CCEEEEC
Q ss_conf 886089803765227999999-98---6299899992998999999999998579-9809985
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAE-IA---RLGLSLVYICSDERILINLKKILTLVVP-DIRVIIF 71 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~-l~---~~~rpilvI~~d~~~A~~l~~dL~~f~~-~~~V~~F 71 (1187)
.++++.++--+||+|++++-- +. ..++.+++|+|-..-+.+-+.+++-|.+ +..|-.+
T Consensus 38 ~g~NlvvsaPTgsGKTlvAElail~~l~~g~k~vYi~P~kALa~EK~~~~~~~~~~gi~V~~~ 100 (736)
T PRK02362 38 EGKNLLAAIPTASGKTLLAELAMLKAIAEGGKALYIVPLRALASEKFEEFSEFSELGLRVGIS 100 (736)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 698189979999858999999999999839979998587999999999999874579989998
No 133
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.83 E-value=0.064 Score=33.52 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=66.5
Q ss_pred CCCEEEECCCCCCHHHHHHH--HHHHC-----------C-CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
Q ss_conf 88608980376522799999--99862-----------9-9899992998999999999998579980998572246701
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILA--EIARL-----------G-LSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPY 79 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla--~l~~~-----------~-rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPY 79 (1187)
.++.+.+.-=+||+|++... .+.+. . --.||++|+.+-|.|+++++..|.....+.. ++-|
T Consensus 45 ~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~-----~~l~ 119 (574)
T PRK04537 45 PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRF-----ALVY 119 (574)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_conf 79988998489888999999999999983744345778996199977989999999999999864589779-----9997
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 00489989999999999998412446887699956678523699866885154899409741999999999982884
Q gi|254780947|r 80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQ 156 (1187)
Q Consensus 80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~ 156 (1187)
...+ .. +..+.| .+.+.|||+|+.-|+..+-....+.-..+.+-+=||.| .|.++||.
T Consensus 120 GG~~----~~-~q~~~L--------~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD------~LLd~gF~ 177 (574)
T PRK04537 120 GGVD----YD-KQRELL--------QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD------RMFDLGFI 177 (574)
T ss_pred CCCC----HH-HHHHHH--------CCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH------HHHCCCCH
T ss_conf 9966----88-999987--------35999899898999999981798653331589962732------65428779
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=95.82 E-value=0.062 Score=33.65 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCE
Q ss_conf 99899999751146089626753222246-73377641466566820010011222200018589999999999867982
Q gi|254780947|r 332 LNYQQFDALIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIK 410 (1187)
Q Consensus 332 l~~~el~~ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~r 410 (1187)
++++.|+. -+.++.-++.....+... .....+.....+...|......+..--.....++..+++++....+.|.+
T Consensus 352 iT~Qn~Fr---~y~kl~GmTGTa~te~~Ef~~iY~l~v~~iPtn~p~~R~d~~d~vy~t~~~k~~av~~ei~~~~~~gqP 428 (885)
T PRK12903 352 ITYQNFFR---LFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHEKGQP 428 (885)
T ss_pred EEHHHHHH---HCCHHCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 30998986---460422676777889999999869736981899985214283231078999999999999999857998
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCC----CCCHHH--HHCCCCCCEEEEECCCCCC
Q ss_conf 9999589458999998677648873323----452245--5204668479998104468
Q gi|254780947|r 411 TIISASSQGALQHLIHLIESHGFKKIKK----INTLTE--INSLLKEEIAAVILPINQG 463 (1187)
Q Consensus 411 ViI~a~s~~~~eRL~elL~e~gI~~~~~----~~~~~~--~~~~~~~~i~i~~~~L~~G 463 (1187)
|+|-+.|-...|.|+.+|...|++...- ...-++ .....+|.|.+..-=-.+|
T Consensus 429 vLvgt~sve~Se~ls~~L~~~~i~h~vLNAk~~~~EA~Iia~AG~~g~VTiATNMAGRG 487 (885)
T PRK12903 429 ILIGTAQVEDSEQLHEYLLEANIPHTVLNAKQHAREAEIIAKAGQKGAITIATNMAGRG 487 (885)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 89956847999999999985687703554686588999999548999189837667899
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=95.80 E-value=0.045 Score=34.74 Aligned_cols=48 Identities=8% Similarity=0.329 Sum_probs=43.7
Q ss_pred CHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 000185899999999998679829999589458999998677648873
Q gi|254780947|r 388 WESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 388 ~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
.....++..+++++....+.|..|++-+.|-...|.|+.+|...||+.
T Consensus 429 ~t~~~K~~Av~~ei~~~~~~gqPVLvGT~Sve~SE~ls~~L~~~gi~h 476 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEH 476 (913)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 389999999999999999749988996274688999999999769975
No 136
>KOG0392 consensus
Probab=95.77 E-value=0.056 Score=33.95 Aligned_cols=283 Identities=18% Similarity=0.253 Sum_probs=146.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHC-----------CCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH
Q ss_conf 41443166543248999999987511-----------2754999824366555899999986067898335410666302
Q gi|254780947|r 647 MDRLICGDVGFGKTEIALRAAFIAVM-----------NGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTK 715 (1187)
Q Consensus 647 MDRLiCGDVGfGKTEVA~RAafkav~-----------~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~ 715 (1187)
..-.+|-|-|-|||==+| ++.|-. +-.-+-|+||.|+- -|+..=.++|.+| ..++-+--++.
T Consensus 995 LHGILcDDMGLGKTLQti--cilAsd~y~r~s~~~e~~~~PSLIVCPsTLt--GHW~~E~~kf~pf---L~v~~yvg~p~ 1067 (1549)
T KOG0392 995 LHGILCDDMGLGKTLQTI--CILASDHYKRRSESSEFNRLPSLIVCPSTLT--GHWKSEVKKFFPF---LKVLQYVGPPA 1067 (1549)
T ss_pred CCCEEECCCCCCHHHHHH--HHHHHHHHHHCCCCHHHCCCCEEEECCCHHH--HHHHHHHHHHCCH---HHHHHHCCCHH
T ss_conf 354542134632789999--9997888750246601135875898870011--4899999875630---12343137758
Q ss_pred HHHHHHHHHCCCCCEEEEECHHHHCCCCCC---CCCCEEEEECHHHHHHHHH---HHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 567777531225760898520654278520---2365699722233008889---9886316788489995353408899
Q gi|254780947|r 716 EAALHKKSITEGQVDIVIGTHALLNPKITF---ANLGLIIIDEEQHFGVKHK---EALKETHTGVHVLTLSATPIPRTLQ 789 (1187)
Q Consensus 716 e~~~i~~~l~~G~idiviGTH~ll~~~v~f---~~LgLliiDEEqrFGV~~K---e~lk~~~~~vdvLtlsATPIPRTL~ 789 (1187)
+..++....++- ||+|-.--.+-+|+.+ .+---.|.||-|=--=.+- -..|+++++ |-|-||-|||--.--
T Consensus 1068 ~r~~lR~q~~~~--~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~-hRLILSGTPIQNnvl 1144 (1549)
T KOG0392 1068 ERRELRDQYKNA--NIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRAN-HRLILSGTPIQNNVL 1144 (1549)
T ss_pred HHHHHHHHCCCC--CEEEEEHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHHHHHHHHHHHHC-CEEEEECCCCCCCHH
T ss_conf 777777543666--56996589988789999855222699407604211388999999997640-237740887666799
Q ss_pred HHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHH----HHHHHHHHHCCEEE-EEECCCCCHHHHHHHHH----HHCCC
Q ss_conf 99712225412201578877537999857978989----99998987188599-98264469288999998----61654
Q gi|254780947|r 790 LAITGVRELSLISMPPINRIACRTSISIFDPLVVR----ETLMREYYRGGQSF-YVCPRLSDLEKCYTFLQ----SEVPE 860 (1187)
Q Consensus 790 msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~----~ai~rEl~RgGQvf-~v~nrv~~i~~~~~~l~----~l~p~ 860 (1187)
-|-.+=|.= .| -==-+=++|-..|-.-+.+ .+=.+|..+|--.- -+|-. -+..+-.+++ +=+|+
T Consensus 1145 -eLWSLFdFL---MP-GfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKq--VLPF~LRRlKedVL~DLPp 1217 (1549)
T KOG0392 1145 -ELWSLFDFL---MP-GFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQ--VLPFLLRRLKEDVLKDLPP 1217 (1549)
T ss_pred -HHHHHHHHH---CC-CCCCCHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCH
T ss_conf -999999984---66-6567188898875550454238655666787648899999998--8899999988888764885
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 64888613467478999999996388757976102003633223326676250235886045532210356767369999
Q gi|254780947|r 861 LKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFL 940 (1187)
Q Consensus 861 ~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~ayayl~ 940 (1187)
--|.=-.--|++-+. +.-.+|... ...-++.+| +.|.+=-++ ..++-|- -|- -+|+=-+
T Consensus 1218 KIIQDyyCeLs~lQ~-kLY~df~~~-~k~~~~~~~-d~~~~S~gt-----~~~HvFq--aLq--YlrKLcn--------- 1276 (1549)
T KOG0392 1218 KIIQDYYCELSPLQK-KLYRDFVKK-AKQCVSSQI-DGGEESLGT-----DKTHVFQ--ALQ--YLRKLCN--------- 1276 (1549)
T ss_pred HHHHHEEECCCHHHH-HHHHHHHHH-HCCCCCCCC-CCCHHCCCC-----CHHHHHH--HHH--HHHHHCC---------
T ss_conf 653310340678999-999999887-503520034-643210575-----1488999--999--9998548---------
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 6688888988999999999725565248
Q gi|254780947|r 941 LPENRPLTAAAQKRLRILQSLNTLGAGF 968 (1187)
Q Consensus 941 ~~~~~~l~~~a~kRL~ai~~~~~lGsGf 968 (1187)
.+.-+||+.+-++-.+......++++.
T Consensus 1277 -HpaLvlt~~hp~la~i~~~l~~~~~~L 1303 (1549)
T KOG0392 1277 -HPALVLTPVHPDLAAIVSHLAHFNSSL 1303 (1549)
T ss_pred -CCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -964442777502999987887740147
No 137
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.76 E-value=0.06 Score=33.75 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=48.7
Q ss_pred EEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 6414665668200100112222000185899999999998679829999589458999998677648873
Q gi|254780947|r 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 366 l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
+.....+...|......+..--.....++..+++++..+.+.|..|+|-+.|-...|.|+++|...||+.
T Consensus 390 l~v~~iPtn~p~~r~d~~d~v~~t~~~k~~av~~~v~~~~~~g~pvLvgt~sv~~Se~~s~~L~~~~i~h 459 (799)
T PRK09200 390 MEVVQIPTNRPIIRIDYPDKVFATVDEKYKAVIEEVKERHETGRPVLIGTGSIEQSEYFSKLLFEAGIPH 459 (799)
T ss_pred CCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 7769889999854454743010899999999999999998579988998385799999999998657643
No 138
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.72 E-value=0.078 Score=32.88 Aligned_cols=197 Identities=13% Similarity=0.187 Sum_probs=97.9
Q ss_pred CHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCC----CCCHHHH--HCCCCCCEEEEECCCC
Q ss_conf 000185899999999998679829999589458999998677648873323----4522455--2046684799981044
Q gi|254780947|r 388 WESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKK----INTLTEI--NSLLKEEIAAVILPIN 461 (1187)
Q Consensus 388 ~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~----~~~~~~~--~~~~~~~i~i~~~~L~ 461 (1187)
.....++..+++++..+.+.|..|++-+.|-...|.|+.+|...||+...- ...-+++ ..-.+|.|.+..-=-.
T Consensus 424 ~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~Iia~AG~~gaVTIATNMAG 503 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRRQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGAVTIATNMAG 503 (896)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCC
T ss_conf 28999999999999999975997899348579899999999986992465267874789999983389996897165568
Q ss_pred CCCC--C-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHCCCCCEEECCCCCEEEECCCCCCC----------
Q ss_conf 6874--6-65688712001373111221222222211012-24440323511203554233112310145----------
Q gi|254780947|r 462 QGFE--T-KHMILVTETDLLGKKIARRVVRKKNVHAQSFF-DSSNIEEGAIIVHAEHGIGRFVRLYSIEV---------- 527 (1187)
Q Consensus 462 ~GF~--~-~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i~-dl~eL~~GDyVVH~dHGIGrY~GLe~l~v---------- 527 (1187)
+|=- . .++ +.++.......... . .+.+. ... +.-|-|+- -=|. --.|.++.+.
T Consensus 504 RGTDI~LGg~~----~~~~~~~~~~~~~~-~----~e~~~~~~~--~~~~~v~~-~GGL-~VigterhesrRiD~QLrGR 570 (896)
T PRK13104 504 RGTDIVLGGSL----AADLANLPADASEQ-E----KEAVKKEWQ--KRHDEVIA-AGGL-RIIGSERHESRRIDNQLRGR 570 (896)
T ss_pred CCCCCCCCCCC----HHHHHCCCCCCHHH-H----HHHHHHHHH--HHHHHHHH-CCCE-EEEEECCCHHHHHHHHHHCC
T ss_conf 88582178751----24443056551166-7----999999999--85334420-5872-89860433124677786053
Q ss_pred CCCCCCEEEEEECCCCEEEEEHHH-----------HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 666663599998699879966675-----------21111003678885323434034899999999999999999999-
Q gi|254780947|r 528 SGTFHDCLELHYADNAKLFVPVEN-----------IDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVD- 595 (1187)
Q Consensus 528 ~G~~~DyL~IeYa~~DkLYVPv~~-----------l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~- 595 (1187)
.|...| -|..+-||..+. -.+..|.|-+...|--|++=+..-+++-+||...-.++-+.||+
T Consensus 571 aGRQGD------PG~s~F~lSleDdLmr~Fg~~~i~~~m~~lg~~e~e~Ie~~~itk~Ie~AQkkVE~~nfdiRK~lLeY 644 (896)
T PRK13104 571 AGRQGD------PGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIENAQRKLEGHHFDVRKQLLDY 644 (896)
T ss_pred CCCCCC------CCCCEEEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 245689------98632665333799987461669999997178887633336689999999999999879999999888
Q ss_pred ----------HHHHHHHH
Q ss_conf ----------99988740
Q gi|254780947|r 596 ----------IAAKRAIH 603 (1187)
Q Consensus 596 ----------lyA~R~~~ 603 (1187)
+|++|...
T Consensus 645 DdVmn~QR~vIY~qR~~I 662 (896)
T PRK13104 645 DNVANDQRQVIYTQRSSI 662 (896)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998
No 139
>PTZ00110 helicase; Provisional
Probab=95.57 E-value=0.18 Score=30.12 Aligned_cols=247 Identities=14% Similarity=0.151 Sum_probs=138.1
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 79829999589458999998677648873323452245520466847999810446874665688712001373111221
Q gi|254780947|r 407 KGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGKKIARRV 486 (1187)
Q Consensus 407 ~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF~~~kl~vITE~EIFG~k~~~r~ 486 (1187)
+|-.++|++.|..-+..+.+.+...+-.. .-.+.. ++|-......
T Consensus 254 ~gP~aLILaPTRELA~QI~~e~~~~~~~~--------------~ir~~~---------------------i~GG~~~~~Q 298 (602)
T PTZ00110 254 DGPIVLVLAPTRELAEQIREQALQFGRSS--------------KLKNSV---------------------AYGGVPKRFQ 298 (602)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCC--------------CCEEEE---------------------EECCCCHHHH
T ss_conf 99769997383999999999999971547--------------854999---------------------9799687999
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCC--CEEEEEHHHHHHHHHHCCCCCC
Q ss_conf 22222221101224440323511203554233112310145666663599998699--8799666752111100367888
Q gi|254780947|r 487 VRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADN--AKLFVPVENIDLISRYSTEITT 564 (1187)
Q Consensus 487 ~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~--DkLYVPv~~l~lIskYg~~~~~ 564 (1187)
.+..+....-+. =.||=++=|.+.|. ..|.. -.||+|--||- |.=|- .++..|-.....
T Consensus 299 ~~~L~~G~dIvV----ATPGRLiDlL~~~~---~~L~~-------v~yLVLDEADRMLDmGFe--~qI~~Il~~i~p--- 359 (602)
T PTZ00110 299 TYALRRGVEILI----ACPGRLIDFLESNV---TNLRR-------VTYLVLDEADRMLDMGFE--PQIRKIVSQIRP--- 359 (602)
T ss_pred HHHHCCCCCEEE----ECCHHHHHHHHCCC---CCCCC-------EEEEEEECHHHHHCCCCH--HHHHHHHHHCCC---
T ss_conf 998716999999----79238999996499---87431-------028998757766354629--999999985897---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 53234340348999999999999999999999998874015677878467898998488888744899999998760598
Q gi|254780947|r 565 VTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSG 644 (1187)
Q Consensus 565 p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~ 644 (1187)
-+-.=|=|..|.+ .|+++|.++++-+..+-........ |-..|..-+
T Consensus 360 dRQTlLFSAT~p~-------~V~~LA~~~L~~~Pv~I~Vg~~~~~-----------------------a~~~I~Q~v--- 406 (602)
T PTZ00110 360 DRQTLMWSATWPK-------EVQSLARDLCKEEPVHVNVGSLDLT-----------------------TCHNIKQEV--- 406 (602)
T ss_pred CCEEEEEECCCCH-------HHHHHHHHHHCCCCEEEEECCCCCC-----------------------CCCCCEEEE---
T ss_conf 8779999558998-------9999999982069889993688877-----------------------778705899---
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 85414431665432489999999875112754999824366555899999986067898335410666302567777531
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSI 724 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l 724 (1187)
.+|-+ ......+....+...++.+|.|-|-|.--|+..+..+. ..+| .+..|.-=.+..|..++++++
T Consensus 407 -----~vv~~---~eK~~~L~~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~--~~G~--~a~~LHGd~~Q~eR~~~L~~F 474 (602)
T PTZ00110 407 -----FVIEE---HEKRAKLKELLGQIMDGGKILIFSETKKGADTLTKELR--LDGW--PALCIHGDKKQEERTWVLNEF 474 (602)
T ss_pred -----EEECH---HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH--HCCC--CEEEEECCCCHHHHHHHHHHH
T ss_conf -----99651---88999999999852789968999297389999999998--6799--579820889999999999999
Q ss_pred CCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf 22576089852065427852023656997
Q gi|254780947|r 725 TEGQVDIVIGTHALLNPKITFANLGLIII 753 (1187)
Q Consensus 725 ~~G~idiviGTH~ll~~~v~f~~LgLlii 753 (1187)
++|++.|+|.| -+.+..+.++|+.+||=
T Consensus 475 r~G~~~ILVAT-DVAARGLDI~dV~~VIN 502 (602)
T PTZ00110 475 KTGKHPIMIAT-DVASRGLDVRDVKYVIN 502 (602)
T ss_pred HCCCCCEEEEC-CHHHCCCCCCCCCEEEE
T ss_conf 76999889882-22331555157987999
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.54 E-value=0.16 Score=30.47 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=54.0
Q ss_pred CEEEECCCCCCHHHHHHHH-HH---HC--CCCEEEEECCHHHHHHHHHHHHHHCCCCE---EEECCCCCCCCHHCCCCCH
Q ss_conf 6089803765227999999-98---62--99899992998999999999998579980---9985722467010048998
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAE-IA---RL--GLSLVYICSDERILINLKKILTLVVPDIR---VIIFPAWDCLPYDRVSPSP 86 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~-l~---~~--~rpilvI~~d~~~A~~l~~dL~~f~~~~~---V~~FP~~E~LPYd~~sp~~ 86 (1187)
+...+.+-+|++|++.+.. +. .. ..++++++|...-+.++++.+..+.++.. +..+ +..+.
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~--------~~~~~-- 94 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLY--------GGDSK-- 94 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEE--------CCCCH--
T ss_conf 98899899996099999999999863389975999908599999999886010210204455652--------47737--
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 99999999999984124468876999566785
Q gi|254780947|r 87 YVVTRRLSCISNLVSFNSSKETIIVLTTVSAV 118 (1187)
Q Consensus 87 di~~eRl~~L~~L~~~~~~~~~~IIVtt~~AL 118 (1187)
...+.++. ++...|+|+|+..+
T Consensus 95 ------~~~~~~~~----~~~~~i~i~t~~~l 116 (201)
T smart00487 95 ------REQLRKLE----SGKTDILVTTPGRL 116 (201)
T ss_pred ------HHHHHHHH----CCCCCEEEECHHHH
T ss_conf ------99999997----59998999558999
No 141
>KOG0925 consensus
Probab=95.51 E-value=0.23 Score=29.23 Aligned_cols=278 Identities=19% Similarity=0.217 Sum_probs=183.6
Q ss_pred EEECCCCCCHH-HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 43166543248-999999987511275499982436655589999998606-7898335410666302567777531225
Q gi|254780947|r 650 LICGDVGFGKT-EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQ-GFSVRIASISRFVQTKEAALHKKSITEG 727 (1187)
Q Consensus 650 LiCGDVGfGKT-EVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~-~~pv~i~~lsRf~~~~e~~~i~~~l~~G 727 (1187)
.+.||-|-||| -|--.+++-+..-.+|||---|--+-|.|--+.-.+-|. ..+-.|+.-=||-.-.-.+-+++=.-+|
T Consensus 66 v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDg 145 (699)
T KOG0925 66 VLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDG 145 (699)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHCCH
T ss_conf 99934888864547499999987633661324715788999999888874431020115321212368715899995332
Q ss_pred CCEEEEECHHHHCC---CCCCCCCCEEEEECHHHHHHH-------HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 76089852065427---852023656997222330088-------89988631678848999535340889999712225
Q gi|254780947|r 728 QVDIVIGTHALLNP---KITFANLGLIIIDEEQHFGVK-------HKEALKETHTGVHVLTLSATPIPRTLQLAITGVRE 797 (1187)
Q Consensus 728 ~idiviGTH~ll~~---~v~f~~LgLliiDEEqrFGV~-------~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd 797 (1187)
- ||.. |--...-|.+|.||-|-=-+. -||-++. |+..-+.-||||-----+|--..+.
T Consensus 146 m---------LlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a~Kfq~yf~n~-- 213 (699)
T KOG0925 146 M---------LLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRN-RPDLKLVVMSATLDAEKFQRYFGNA-- 213 (699)
T ss_pred H---------HHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHCCCC--
T ss_conf 8---------999875085545300799531666667899999999999861-9881699940601259999870799--
Q ss_pred CCEEECCCCCCCCEEEEEEE-CCHHHHHHHHHH--HHHH---CCEEEEEECCCCCHHHHHHHHH----HHCCC---CCEE
Q ss_conf 41220157887753799985-797898999998--9871---8859998264469288999998----61654---6488
Q gi|254780947|r 798 LSLISMPPINRIACRTSISI-FDPLVVRETLMR--EYYR---GGQSFYVCPRLSDLEKCYTFLQ----SEVPE---LKIA 864 (1187)
Q Consensus 798 ~S~i~tpP~~R~~v~T~v~~-~~~~~i~~ai~r--El~R---gGQvf~v~nrv~~i~~~~~~l~----~l~p~---~~i~ 864 (1187)
.+++-|- ++||.-|-.+ ....-+-.||+- |+.+ -|-+-.--.-=+.|+....+|. .|.|+ .+|.
T Consensus 214 -Pll~Vpg--~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925 214 -PLLAVPG--THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred -CEEECCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf -7564589--8845788358887368999999999998416888789994677899999999999887525156883688
Q ss_pred EEECCCCHHHHHHHHHHHHCCC--CCEEEECCCEECCCCCCCCCEEEE--------E----CHHH-----CCCCHHHHHH
Q ss_conf 8613467478999999996388--757976102003633223326676--------2----5023-----5886045532
Q gi|254780947|r 865 MAHGQMSPKNLEDKMNAFYEGQ--YDVLLSTSIVESGLDLPKANTMIV--------Q----RADM-----FGLAQLYQLR 925 (1187)
Q Consensus 865 vaHGqm~~~~le~~m~~F~~~~--~dvLv~TtIiEsGlDip~aNTiii--------~----~ad~-----~GLaqlyQlr 925 (1187)
-.|-++..+-.|-+= .=-+|- --|.|+|.|-|+-+-|+..--.|= + |++- ..=||-.|=+
T Consensus 291 PLyP~~qq~iFep~p-~~~~~~~~RKvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~ 369 (699)
T KOG0925 291 PLYPAQQQRIFEPAP-EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 369 (699)
T ss_pred ECCCHHHCCCCCCCC-CCCCCCCCCEEEEEECCHHEEEEECCEEEEECCCHHHHCCCCCCEEEEEEEECCCHHHHHHHHH
T ss_conf 458156436567898-4547876654999814034057506479996676013003475203310130611676799875
Q ss_pred HHCCCCCCCCEEEEEECCC
Q ss_conf 2103567673699996688
Q gi|254780947|r 926 GRVGRSKIASFALFLLPEN 944 (1187)
Q Consensus 926 GRVGRs~~~ayayl~~~~~ 944 (1187)
||-||+ +-+-|+-+|+..
T Consensus 370 gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925 370 GRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred HHCCCC-CCCCEEEEECHH
T ss_conf 430789-998368850077
No 142
>KOG0385 consensus
Probab=95.50 E-value=0.093 Score=32.29 Aligned_cols=328 Identities=23% Similarity=0.320 Sum_probs=160.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC-----EEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHC-C
Q ss_conf 66543248999999987511275-----49998243665558999999860678983354106663025677775312-2
Q gi|254780947|r 653 GDVGFGKTEIALRAAFIAVMNGL-----QVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSIT-E 726 (1187)
Q Consensus 653 GDVGfGKTEVA~RAafkav~~gk-----QvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~-~ 726 (1187)
-..|-|||=-+| ||.+.+-++ --.|+||-..|. +..+.|+-|--.+.++.=.-++.+....++++- .
T Consensus 193 DEMGLGKTlQtI--s~l~yl~~~~~~~GPfLVi~P~StL~-----NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~ 265 (971)
T KOG0385 193 DEMGLGKTLQTI--SLLGYLKGRKGIPGPFLVIAPKSTLD-----NWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLP 265 (971)
T ss_pred HHCCCCHHHHHH--HHHHHHHHHCCCCCCEEEEEEHHHHH-----HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf 310453389999--99999998517999849981276678-----99999997689863498847999999999985315
Q ss_pred CCCEEEEECHHHHCCCCCC---CCCCEEEEECHHHHHHHHH---HHHHHCCCCCCEEEEECCCCCHHHHH--HH------
Q ss_conf 5760898520654278520---2365699722233008889---98863167884899953534088999--97------
Q gi|254780947|r 727 GQVDIVIGTHALLNPKITF---ANLGLIIIDEEQHFGVKHK---EALKETHTGVHVLTLSATPIPRTLQL--AI------ 792 (1187)
Q Consensus 727 G~idiviGTH~ll~~~v~f---~~LgLliiDEEqrFGV~~K---e~lk~~~~~vdvLtlsATPIPRTL~m--sl------ 792 (1187)
|.-||+|-|--+.=+|-.| -+---+||||-||---.+- +-+|. .....-|-||-||+--.||= ||
T Consensus 266 ~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~-f~~~nrLLlTGTPLQNNL~ELWaLLnFllP 344 (971)
T KOG0385 266 GRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE-FKTDNRLLLTGTPLQNNLHELWALLNFLLP 344 (971)
T ss_pred CCCCEEEEHHHHHHHHHHHHHCCCCEEEEECHHHHHCCHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHCH
T ss_conf 7876686407889866889861993499952365414624489999998-566552675278543649999999976221
Q ss_pred ------------------HCC----------------CCC-CE--EECCCCCCCCEEEEEEECC--HHHHHHHHHHHHH-
Q ss_conf ------------------122----------------254-12--2015788775379998579--7898999998987-
Q gi|254780947|r 793 ------------------TGV----------------REL-SL--ISMPPINRIACRTSISIFD--PLVVRETLMREYY- 832 (1187)
Q Consensus 793 ------------------~g~----------------rd~-S~--i~tpP~~R~~v~T~v~~~~--~~~i~~ai~rEl~- 832 (1187)
.|- |-+ |. -.-||..- +.-||.--+ ...-+.-+++.+.
T Consensus 345 diF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE--~~iyvgms~mQkk~Y~~iL~kdl~~ 422 (971)
T KOG0385 345 DIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE--LIIYVGMSSMQKKWYKAILMKDLDA 422 (971)
T ss_pred HHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE--EEEEECCHHHHHHHHHHHHHHCCHH
T ss_conf 42057889999971134335589999999866389999988878741897532--6786065088999999999611375
Q ss_pred ---HC-CE----------------EEEEECCCCC------HHHH------HHHHHHHCC---------------------
Q ss_conf ---18-85----------------9998264469------2889------999986165---------------------
Q gi|254780947|r 833 ---RG-GQ----------------SFYVCPRLSD------LEKC------YTFLQSEVP--------------------- 859 (1187)
Q Consensus 833 ---Rg-GQ----------------vf~v~nrv~~------i~~~------~~~l~~l~p--------------------- 859 (1187)
-| |+ -=|+..-++- -+.. -.-|.+|+|
T Consensus 423 ~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDI 502 (971)
T KOG0385 423 LNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDI 502 (971)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf 42666320378999999999746996414888889998862178754761116998889998489769982698889999
Q ss_pred --------CCCEEEEECCCCHHHHHHHHHHHHCC---CCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHH--HH
Q ss_conf --------46488861346747899999999638---875797610200363322332667625023588604553--22
Q gi|254780947|r 860 --------ELKIAMAHGQMSPKNLEDKMNAFYEG---QYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQL--RG 926 (1187)
Q Consensus 860 --------~~~i~vaHGqm~~~~le~~m~~F~~~---~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQl--rG 926 (1187)
+-.+.-.-|+++-.+=++.|.+|-.. ++=-|++|--=--||....|.|.|+.+.|.=-=+.|--+ --
T Consensus 503 LeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaH 582 (971)
T KOG0385 503 LEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAH 582 (971)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99998751752687238887078999998638997625899985046666302223647999668998214378899888
Q ss_pred HCCCCCCCCEEEEEECCCCCCCHH----H--HHHHHHH--HHHCCCCH-----HHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 103567673699996688888988----9--9999999--97255652-----489999998511630004611155389
Q gi|254780947|r 927 RVGRSKIASFALFLLPENRPLTAA----A--QKRLRIL--QSLNTLGA-----GFQLASYDLDIRGTGNLLGEEQSGHIR 993 (1187)
Q Consensus 927 RVGRs~~~ayayl~~~~~~~l~~~----a--~kRL~ai--~~~~~lGs-----Gf~iA~~DleiRGaG~llG~~QsG~i~ 993 (1187)
|+|--+ +---|=++..+. +-+. | .-||+.+ +.- .|+. --+-.|-+|-=-||+.+.-..||+--.
T Consensus 583 RIGQ~K-~V~V~RLitent-VEe~IveRA~~KL~Ld~~VIq~g-~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~~d 659 (971)
T KOG0385 583 RIGQKK-PVVVYRLITENT-VEEKIVERAAAKLRLDKLVIQQG-RLEEQKSNGLGKDELLNLLRFGADPVFESKESTISD 659 (971)
T ss_pred HCCCCC-CEEEEEEECCCH-HHHHHHHHHHHHHCHHHHHHCCC-CHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCCCCCH
T ss_conf 607877-159999753551-89999999998744155301377-055320354317779999873826553103455503
No 143
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=95.43 E-value=0.056 Score=33.97 Aligned_cols=335 Identities=17% Similarity=0.220 Sum_probs=212.0
Q ss_pred HHHHCCCCCCCCCCEEEEECHHHHHHHHH-------HHHHHCCCC--CCEEEEECCCCCHHHHHHHHCCCCCCEEECCC-
Q ss_conf 06542785202365699722233008889-------988631678--84899953534088999971222541220157-
Q gi|254780947|r 736 HALLNPKITFANLGLIIIDEEQHFGVKHK-------EALKETHTG--VHVLTLSATPIPRTLQLAITGVRELSLISMPP- 805 (1187)
Q Consensus 736 H~ll~~~v~f~~LgLliiDEEqrFGV~~K-------e~lk~~~~~--vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP- 805 (1187)
-|.||+|=.-.-.|+||.||=|==-..-= |==..||.. .=+|-|||| |.|-|==|++...|
T Consensus 103 TRMlQ~DP~L~GVg~liFDEFHERsL~aDLaLALaLdVQs~LRdDPPLkil~MSAT---------Ldg~rLs~LL~~Ap~ 173 (858)
T TIGR01970 103 TRMLQDDPELEGVGLLIFDEFHERSLDADLALALALDVQSALRDDPPLKILIMSAT---------LDGERLSSLLPDAPV 173 (858)
T ss_pred HHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHCCCC---------CHHHHHHHHCCCCCE
T ss_conf 77401688845352323110224346788999998853343106864000000026---------327999974330264
Q ss_pred ---CCC-CCEEEEEEE-CCH-----HHHHHHHHHHHH-HCCE----EEEEECCCCCHHHHHHHHH-HHC--CCCCEEEEE
Q ss_conf ---887-753799985-797-----898999998987-1885----9998264469288999998-616--546488861
Q gi|254780947|r 806 ---INR-IACRTSISI-FDP-----LVVRETLMREYY-RGGQ----SFYVCPRLSDLEKCYTFLQ-SEV--PELKIAMAH 867 (1187)
Q Consensus 806 ---~~R-~~v~T~v~~-~~~-----~~i~~ai~rEl~-RgGQ----vf~v~nrv~~i~~~~~~l~-~l~--p~~~i~vaH 867 (1187)
++| +||.+.=.+ ... .-+..||.+=|. --|- |-.=-|=...|.++.+.|+ .|= |++.|+=-|
T Consensus 174 v~S~GR~fPVe~rY~~P~~~~e~l~~~~~r~v~~~La~~~GSGPqd~LvFLPG~aEI~Rv~~~L~e~L~~rs~v~lcPLY 253 (858)
T TIGR01970 174 VESEGRSFPVEIRYLPPLREDERLEDRVSRAVEHALAEESGSGPQDVLVFLPGQAEIRRVQEQLAERLDARSEVLLCPLY 253 (858)
T ss_pred EEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHEECCCHHHHHHHHHHHHHHHCCCCCCHHCCCC
T ss_conf 20078787611022767875553347899999999961678863301001687778999999999975178710005767
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECH----HH----CCCCHHHHH----------HHHCC
Q ss_conf 3467478999999996388757976102003633223326676250----23----588604553----------22103
Q gi|254780947|r 868 GQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRA----DM----FGLAQLYQL----------RGRVG 929 (1187)
Q Consensus 868 Gqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~a----d~----~GLaqlyQl----------rGRVG 929 (1187)
|+|+-.+=.+++.-=-.|.=-|-++|+|=||=|-|+-.- ++||-+ =+ =|++=|-+- +||=|
T Consensus 254 G~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvR-vViDsGl~R~arFDP~sG~TRL~~~RisqASA~QRAGRAG 332 (858)
T TIGR01970 254 GELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVR-VVIDSGLARVARFDPKSGITRLETQRISQASATQRAGRAG 332 (858)
T ss_pred CCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEE-EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 888978999870877466734342000122210017635-8871565567634788874024457889733765126332
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC----CC----------C---------------HHHHHHHHHHHHCCC
Q ss_conf 567673699996688888988999999999725----56----------5---------------248999999851163
Q gi|254780947|r 930 RSKIASFALFLLPENRPLTAAAQKRLRILQSLN----TL----------G---------------AGFQLASYDLDIRGT 980 (1187)
Q Consensus 930 Rs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~~----~l----------G---------------sGf~iA~~DleiRGa 980 (1187)
|= .=+-||=+++.. -.+||.+..+=+ || | +-|.-|-+=|.-=|+
T Consensus 333 Rl-epGvc~RLw~~~------q~~~l~~~~~pEIlqaDL~~LAleLA~WG~~dPsdL~wLd~PP~~a~A~A~~LL~RL~~ 405 (858)
T TIGR01970 333 RL-EPGVCYRLWSEE------QHKRLAAQSEPEILQADLAGLALELARWGAKDPSDLRWLDAPPAAAFAAARQLLQRLGA 405 (858)
T ss_pred CC-CCCHHEECCCHH------HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 21-114111227868------98863204787632766889999997424788688742378846899999999887412
Q ss_pred CCCCCCCCCC--CHHHHHHHHHH--------HHHHHHHHHHHCCCCCCCCCCCCEEECCCCC-CCCHHHCCCHHHHHHHH
Q ss_conf 0004611155--38983389999--------9999999998288876766665256548851-16734389988899999
Q gi|254780947|r 981 GNLLGEEQSG--HIREIGFELYQ--------KMLEETVASIKGQKDLVESDWSPQVLIEASV-MIPESYVSDINLRLSLY 1049 (1187)
Q Consensus 981 G~llG~~QsG--~i~~vG~~ly~--------~ml~~av~~~kg~~~~~~~~~~~~i~~~~~~-~ip~~yi~d~~~rl~~Y 1049 (1187)
| +=-| .|.+-|=.||- -||-.|=+ .. ......-|+|--=+.+ -||-.=-.|...|+...
T Consensus 406 ---l--~a~~rd~ltA~Gk~~~~Lg~~PRlAamLl~a~~----~~-~~~a~~A~~lAalLeer~~~R~G~~Dl~~~l~~~ 475 (858)
T TIGR01970 406 ---L--DAEGRDKLTAHGKAMAELGLHPRLAAMLLRADS----KS-EGLAALACDLAALLEERGLLRQGGADLAARLHRL 475 (858)
T ss_pred ---C--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC----CC-HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf ---3--888701477999999867898268999984156----79-7899999999876407888988743289999974
Q ss_pred HHHHHCCC--------HHHHHHHHHHHHHHC--CCCCHH----------HHHHHHHHHHHHHHHHCCC
Q ss_conf 98750899--------899999999977624--889889----------9999999999999998697
Q gi|254780947|r 1050 RRLGNITD--------HADISHFKEEMVDRF--GPLPIE----------VIHLLKVVFLKLLCRIANI 1097 (1187)
Q Consensus 1050 ~ri~~~~~--------~~~~~~~~~el~drf--G~~P~~----------~~~l~~~~~lk~~~~~~~i 1097 (1187)
..-+..+. ....+.+..-+.-++ +..+.. +=.|+..++=-..|++-|-
T Consensus 476 ~~~~~~~~g~~anrG~~q~a~~l~~~l~~~~~~~~~d~~~~~~~ah~R~~G~LLa~AyPDRiA~~Rg~ 543 (858)
T TIGR01970 476 QQGRQGRRGADANRGAVQRAQQLAKKLRRALRLGSADSGAIAAHAHHRDLGLLLALAYPDRIAKRRGQ 543 (858)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCC
T ss_conf 00014312342002379999999999887536565776553422466627889862162589971877
No 144
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.42 E-value=0.12 Score=31.54 Aligned_cols=45 Identities=31% Similarity=0.206 Sum_probs=35.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 431665432489999999875112754999824366555899999
Q gi|254780947|r 650 LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf 694 (1187)
+|+|..|-|||..|...|-.....++.|.++.+.+.....=...+
T Consensus 6 ll~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~ 50 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL 50 (148)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 999999702999999999872668996899875998988898765
No 145
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=95.41 E-value=0.068 Score=33.35 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=40.5
Q ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 001858999999999986798299995894589999986776488733
Q gi|254780947|r 389 ESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 389 ~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~ 436 (1187)
....++..+++++....+.|..|+|-+.|-...|.|+++|...||+..
T Consensus 419 t~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~ls~~L~~~gi~h~ 466 (775)
T PRK12326 419 TAAEKNDAIVEHIAEVHETGQPVLVGTRDVAESEELAERLVRRGVPAV 466 (775)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCE
T ss_conf 999999999999999997599889970718989999999987699830
No 146
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.39 E-value=0.12 Score=31.34 Aligned_cols=91 Identities=9% Similarity=0.060 Sum_probs=56.2
Q ss_pred CCEEEECCCCCCHHHHHHH--HHHH--------CCCC-EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCC
Q ss_conf 8608980376522799999--9986--------2998-999929989999999999985799809985722467010048
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILA--EIAR--------LGLS-LVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVS 83 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla--~l~~--------~~rp-ilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~s 83 (1187)
++.+.+..-+||+++++.. .+.+ .+.| +||++|+.+-|.++++.+..+.....+-... -+...+
T Consensus 40 g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l~~~~~i~~~~-----i~Gg~~ 114 (417)
T PRK11192 40 GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIAT-----ITGGVA 114 (417)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEE-----EECCCC
T ss_conf 998899899986799999999999987521036899649999471999999999999864005730599-----856878
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC
Q ss_conf 9989999999999998412446887699956678523699
Q gi|254780947|r 84 PSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSV 123 (1187)
Q Consensus 84 p~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp 123 (1187)
..+..+.|. ..+.|||+|+.-|+..+-
T Consensus 115 -----~~~q~~~l~--------~~~dIlV~TPgRL~~~l~ 141 (417)
T PRK11192 115 -----YMNHAEVFS--------ENQDIVVATPGRLLQYIK 141 (417)
T ss_pred -----HHHHHHHHH--------CCCCEEEECCCHHHHHHH
T ss_conf -----799999983--------699989978607777886
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.32 E-value=0.11 Score=31.62 Aligned_cols=193 Identities=18% Similarity=0.226 Sum_probs=110.5
Q ss_pred ECHHHHCCCCCC--CCCCEEEEECH-------HHHH------HHHHHHHHHCCCCCCEEE---------------EECCC
Q ss_conf 520654278520--23656997222-------3300------888998863167884899---------------95353
Q gi|254780947|r 734 GTHALLNPKITF--ANLGLIIIDEE-------QHFG------VKHKEALKETHTGVHVLT---------------LSATP 783 (1187)
Q Consensus 734 GTH~ll~~~v~f--~~LgLliiDEE-------qrFG------V~~Ke~lk~~~~~vdvLt---------------lsATP 783 (1187)
--|.|+.+|+.+ +|=-.+||||= -||. |..||.++--..+.-.=| ||-|-
T Consensus 498 ~A~~l~~~d~dYiV~dg~V~IVDefTGR~m~gRr~sdGLHQAiEAKEgv~i~~e~~tlAsIT~Qn~Fr~Y~kLsGMTGTA 577 (1111)
T PRK12901 498 KAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLSGMTGTA 577 (1111)
T ss_pred HHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHCCCHHCCCCCCC
T ss_conf 99999843862253278189986788887899956517899999981888788873103534877873254531676776
Q ss_pred CCHHHHHHHHCCCCCCEEECCCCC---C--CCEEEEEEECC--HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 408899997122254122015788---7--75379998579--7898999998987188599982644692889999986
Q gi|254780947|r 784 IPRTLQLAITGVRELSLISMPPIN---R--IACRTSISIFD--PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQS 856 (1187)
Q Consensus 784 IPRTL~msl~g~rd~S~i~tpP~~---R--~~v~T~v~~~~--~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~ 856 (1187)
.|=---+..|=.|.|+.-|+-. | +|-+.|.+... .++|.+. .+=..+|--|-.-..-|+.-+.+...|++
T Consensus 578 --~te~~Ef~~iY~l~Vv~IPTn~P~~R~D~~D~iy~t~~~K~~Aii~ei-~~~~~~GqPVLVGT~SVe~SE~lS~~L~~ 654 (1111)
T PRK12901 578 --ETEAGELWDIYKLDVVVIPTNRPIARKDKNDRVYKTKREKYNAVIEEI-VELVEAGRPVLVGTTSVEISELLSRMLKM 654 (1111)
T ss_pred --HHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf --889999999868866981799986566288838669999999999999-99996499789971718889999999987
Q ss_pred HCCCCCEEEEECCCCH--HHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHH------------
Q ss_conf 1654648886134674--78999999996388757976102003633223326676250235886045------------
Q gi|254780947|r 857 EVPELKIAMAHGQMSP--KNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY------------ 922 (1187)
Q Consensus 857 l~p~~~i~vaHGqm~~--~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqly------------ 922 (1187)
. ++.|--++. ++-|.-+..=.-..--|-|+|..---|-||-=. +.---|.-||
T Consensus 655 ~------gi~h~VLNAk~h~~EAeIIA~AG~~GaVTIATNMAGRGTDIkL~-------~~v~~~GGL~VigTERheSrRI 721 (1111)
T PRK12901 655 R------KIPHNVLNAKLHQKEAEIVAEAGQKGTVTIATNMAGRGTDIKLS-------PEVKAAGGLAIIGTERHESRRV 721 (1111)
T ss_pred C------CCHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC-------HHHHHCCCCEEEECCCCHHHHH
T ss_conf 7------87387737787799999998468999679724345788582536-------5578627827752032312567
Q ss_pred --HHHHHCCCCCCCCEEEEEEC
Q ss_conf --53221035676736999966
Q gi|254780947|r 923 --QLRGRVGRSKIASFALFLLP 942 (1187)
Q Consensus 923 --QlrGRVGRs~~~ayayl~~~ 942 (1187)
|||||-||-+--+..-|++.
T Consensus 722 DnQLrGRsGRQGDPG~S~F~lS 743 (1111)
T PRK12901 722 DRQLRGRAGRQGDPGSSQFFVS 743 (1111)
T ss_pred HHHHCCCCCCCCCCCCCEEEEE
T ss_conf 7786043244689875426653
No 148
>KOG0922 consensus
Probab=95.27 E-value=0.27 Score=28.66 Aligned_cols=295 Identities=18% Similarity=0.253 Sum_probs=201.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHH----HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 848888874489999999876059885414431665432489----9999998751127549998243665558999999
Q gi|254780947|r 620 KRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTE----IALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFS 695 (1187)
Q Consensus 620 ~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTE----VA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~ 695 (1187)
.++|-.+-.|| +..-+++.+-+ .|-|+-|-|||- --.+|-| ...|+ +|+-=|--|=|----..-.
T Consensus 48 ~~LPI~~~r~~------il~~ve~nqvl--IviGeTGsGKSTQipQyL~eaG~--~~~g~-I~~TQPRRVAavslA~RVA 116 (674)
T KOG0922 48 ESLPIYKYRDQ------ILYAVEDNQVL--IVIGETGSGKSTQIPQYLAEAGF--ASSGK-IACTQPRRVAAVSLAKRVA 116 (674)
T ss_pred CCCCHHHHHHH------HHHHHHHCCEE--EEECCCCCCCCCCHHHHHHHCCC--CCCCC-EEEECCCHHHHHHHHHHHH
T ss_conf 15998999999------99999878779--99848989853327699986265--66882-7750671677888999999
Q ss_pred HHH-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCC----CCCCCEEEEECHHH--------HHHH
Q ss_conf 860-6789833541066630256777753122576089852065427852----02365699722233--------0088
Q gi|254780947|r 696 ERF-QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKIT----FANLGLIIIDEEQH--------FGVK 762 (1187)
Q Consensus 696 ~Rf-~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~----f~~LgLliiDEEqr--------FGV~ 762 (1187)
+-+ ..++=.|+.-=||-....++- -|..=|--+|-..+- ...-..+||||-|- ||+-
T Consensus 117 eE~~~~lG~~VGY~IRFed~ts~~T----------rikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlL 186 (674)
T KOG0922 117 EEMGCQLGEEVGYTIRFEDSTSKDT----------RIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLL 186 (674)
T ss_pred HHHCCCCCCEEEEEEEECCCCCCCE----------EEEEECCHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 9858976762226998456678733----------699961359999885087645444899832231015788999999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECC-----HHHHHHHHHHHH-HHCCE
Q ss_conf 899886316788489995353408899997122254122015788775379998579-----789899999898-71885
Q gi|254780947|r 763 HKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFD-----PLVVRETLMREY-YRGGQ 836 (1187)
Q Consensus 763 ~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~-----~~~i~~ai~rEl-~RgGQ 836 (1187)
.| +-+.|...-+.-||||==-..+.--..+ .-|-+=|-.-+||+.+-.... ++.+.-.+.=-+ .--|-
T Consensus 187 Kk--i~~~R~~LklIimSATlda~kfS~yF~~----a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922 187 KK--ILKKRPDLKLIIMSATLDAEKFSEYFNN----APILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred HH--HHHCCCCCEEEEEEEEECHHHHHHHHCC----CCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99--8732778369999235248999998647----95676668877556886368850467899999999870489987
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCC------CEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEE-
Q ss_conf 9998264469288999998616546------488861346747899999999638875797610200363322332667-
Q gi|254780947|r 837 SFYVCPRLSDLEKCYTFLQSEVPEL------KIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI- 909 (1187)
Q Consensus 837 vf~v~nrv~~i~~~~~~l~~l~p~~------~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTii- 909 (1187)
+..--+--+.|+...+.|++....+ .+--.||-|+..+=.+|...--.|.=-|.++|.|-||-|-||-.--.|
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCEEEEECCEEEEEEEECCEEEEEC
T ss_conf 89993788899999999998765312457742222104588787620026799986248997231210177356289973
Q ss_pred -------EECHHHCCCC----------HHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf -------6250235886----------045532210356767369999668
Q gi|254780947|r 910 -------VQRADMFGLA----------QLYQLRGRVGRSKIASFALFLLPE 943 (1187)
Q Consensus 910 -------i~~ad~~GLa----------qlyQlrGRVGRs~~~ayayl~~~~ 943 (1187)
++++ +.|+. |--|=-||-||.. -+-||=+|+.
T Consensus 341 sG~vK~~~y~p-~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte 389 (674)
T KOG0922 341 SGFVKQKKYNP-RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTE 389 (674)
T ss_pred CCCEEEEEECC-CCCCCCEEEEECHHHHHHHHCCCCCCCC-CCEEEEEEEH
T ss_conf 87367776356-4674412677212987753324578988-9448885008
No 149
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.23 E-value=0.16 Score=30.57 Aligned_cols=227 Identities=12% Similarity=0.191 Sum_probs=116.7
Q ss_pred HHHHHHCCCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999751146089626753222246-7337764146656682001001122220001858999999999986798299995
Q gi|254780947|r 337 FDALIQTTHKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISA 415 (1187)
Q Consensus 337 l~~ll~~~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a 415 (1187)
+.....-+.++.-++.....+... .....+.....+...|......+..--.....++..+++++..+.+.|..|++-+
T Consensus 482 ~Qn~Fr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTn~P~~R~D~~D~vy~t~~~K~~Aii~ei~~~~~~gqPVLVGT 561 (983)
T PRK12900 482 IQNFFRLYKKLAGMTGTAETEASEFFEIYKLDVVVIPTNRPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGT 561 (983)
T ss_pred HHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 88998537462047567488999999986886698489998400126550418999999999999999974799889983
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC----CCHHH--HHCCCCCCEEEEECCCCCC--------CC-CCCEEEE-ECCCCCC
Q ss_conf 894589999986776488733234----52245--5204668479998104468--------74-6656887-1200137
Q gi|254780947|r 416 SSQGALQHLIHLIESHGFKKIKKI----NTLTE--INSLLKEEIAAVILPINQG--------FE-TKHMILV-TETDLLG 479 (1187)
Q Consensus 416 ~s~~~~eRL~elL~e~gI~~~~~~----~~~~~--~~~~~~~~i~i~~~~L~~G--------F~-~~kl~vI-TE~EIFG 479 (1187)
.|-...|.|+.+|...||+...-. ..-++ ...-.+|.|.|..-=-.+| .. .-.+.|| ||+- =.
T Consensus 562 ~SVe~SE~lS~~L~~~gI~h~VLNAk~h~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLg~~V~elGGL~VIgTErh-eS 640 (983)
T PRK12900 562 ASVEVSETLSRMLRAKRIEHNVLNAKQNEREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERH-ES 640 (983)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCC-HH
T ss_conf 87899999999999859955651678478899999936999977982436789858254834465388077511423-02
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEE------ECCCCEEEEEHHHHH
Q ss_conf 31112212222222110122444032351120355423311231014566666359999------869987996667521
Q gi|254780947|r 480 KKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELH------YADNAKLFVPVENID 553 (1187)
Q Consensus 480 ~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~Ie------Ya~~DkLYVPv~~l~ 553 (1187)
+|.-+.-+-+. + .-||+ |..+=||.|| | ++|++ ..
T Consensus 641 rRIDnQLrGRa---G---------RQGDP--------------------G~S~F~lSLeDdLmr~F-g~dri------~~ 681 (983)
T PRK12900 641 RRIDRQLRGRA---G---------RQGDP--------------------GESVFYVSLEDELMRLF-GSDRV------IS 681 (983)
T ss_pred HHHHHHHHCCC---C---------CCCCC--------------------CCEEEEEECCHHHHHHH-CCHHH------HH
T ss_conf 56787860432---4---------57999--------------------85399996417999975-42789------99
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q ss_conf 111003678885323434034899999999999999999999-----------99988740
Q gi|254780947|r 554 LISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVD-----------IAAKRAIH 603 (1187)
Q Consensus 554 lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~-----------lyA~R~~~ 603 (1187)
+..|.|-+...|--|++=+..-+++-+||...=.++-+.||+ +|++|...
T Consensus 682 ~~~~lg~~e~~~i~~~~i~~~ie~AQkkvE~~nfdiRK~ll~yDdVmN~QRkVIY~qR~~I 742 (983)
T PRK12900 682 VMDKLGHEEGDVIEHSMITKSIERAQKKVEEQNFAIRKRLLEYDDVLNQQREVIYTRRRNG 742 (983)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9984279999816766699999999999986357999888788677999989999999999
No 150
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.20 E-value=0.11 Score=31.83 Aligned_cols=91 Identities=9% Similarity=0.122 Sum_probs=55.0
Q ss_pred CCCEEEECCCCCCHHHHHH--HHHHH-------CC----C-CEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCH
Q ss_conf 8860898037652279999--99986-------29----9-899992998999999999998579980998572246701
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFIL--AEIAR-------LG----L-SLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPY 79 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~alll--a~l~~-------~~----r-pilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPY 79 (1187)
.++.+.+..=+||+|++.. .-+.+ .+ . ..||++|+.+-|.|+++.+..|.....+-. .+-|
T Consensus 45 ~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~-----~~~~ 119 (423)
T PRK04837 45 AGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKL-----GLAY 119 (423)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEE-----EEEE
T ss_conf 79988998999874999999999999983745334556786189993889999999999999743258459-----9998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 0048998999999999999841244688769995667852369
Q gi|254780947|r 80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
...+. .+.... | ...+.|||+|+.-|+..+
T Consensus 120 GG~~~-----~~q~~~---l-----~~~~dIlV~TPgRL~d~~ 149 (423)
T PRK04837 120 GGEGY-----DKQLKV---L-----ESGVDILIGTTGRLIDYA 149 (423)
T ss_pred CCCCH-----HHHHHH---H-----HCCCCEEEECHHHHHHHH
T ss_conf 99887-----999998---7-----179998998918999998
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.19 E-value=0.17 Score=30.26 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 00185899999999998679829999589458999998677648873
Q gi|254780947|r 389 ESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 389 ~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
....++..+++++..+.+.|..|+|-+.|-...|.|+.+|..+||+.
T Consensus 425 t~~~K~~Av~~ei~~~~~~gqPVLVGT~SVe~SE~ls~lL~~~gi~h 471 (946)
T PRK12902 425 TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLAEQGIPH 471 (946)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999997589988997275798999999998558862
No 152
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.13 Score=31.15 Aligned_cols=89 Identities=18% Similarity=0.299 Sum_probs=71.3
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCC
Q ss_conf 99987511275499982436655589999998606789833541066630256777753122576089852065427852
Q gi|254780947|r 665 RAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKIT 744 (1187)
Q Consensus 665 RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~ 744 (1187)
|=.=|....|+-|-+.+|+-.-.+|-..-+++-|.. .+|+..+ ...+..++..+.+.+|++||+|-|. +|-..|.
T Consensus 296 ~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vh--s~d~~R~EkV~~fR~G~~~lLiTTT-ILERGVT 370 (441)
T COG4098 296 RWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVH--SEDQHRKEKVEAFRDGKITLLITTT-ILERGVT 370 (441)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC--CCEEEEE--CCCCCHHHHHHHHHCCCEEEEEEEE-HHHCCCC
T ss_conf 999998743882899925058899999999861886--4215653--3670178999998758638999844-0332664
Q ss_pred CCCCCEEEEECHHH
Q ss_conf 02365699722233
Q gi|254780947|r 745 FANLGLIIIDEEQH 758 (1187)
Q Consensus 745 f~~LgLliiDEEqr 758 (1187)
|+|+-..+++-|||
T Consensus 371 fp~vdV~Vlgaeh~ 384 (441)
T COG4098 371 FPNVDVFVLGAEHR 384 (441)
T ss_pred CCCCEEEEECCCCC
T ss_conf 35623999547764
No 153
>PRK12377 putative replication protein; Provisional
Probab=95.18 E-value=0.29 Score=28.47 Aligned_cols=135 Identities=15% Similarity=0.180 Sum_probs=78.9
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHCCCC-CCH
Q ss_conf 21111003678885323434034899-999999999999999999999887-401567787846789899848888-874
Q gi|254780947|r 552 IDLISRYSTEITTVTLDKLGGSAWKT-RKANLKKRLEDLAQKLVDIAAKRA-IHSVPPLMVSQDLYSQFIKRFPHV-ETE 628 (1187)
Q Consensus 552 l~lIskYg~~~~~p~L~kLGg~~W~k-~K~Kakk~v~diA~eLl~lyA~R~-~~~g~~f~~d~~~~~eFe~~Fpye-ET~ 628 (1187)
+..++|--.....|+... ..+|.. ..+++++..+++..+= .+.|. ...|-+=-.|-...--|+ -|. ++|
T Consensus 10 l~rl~r~~p~~~~p~~~~--~~e~~~~~~~q~~~~~~~i~r~~---rq~r~~k~~~rs~i~~~h~~~~f~---ny~~~~~ 81 (248)
T PRK12377 10 LERIRRLAPQHVQPPFRT--VDEWREWQLAEGRKRSEEINRQN---RQLRVEKILNRSGIQPLHRKCSFA---NYQVQND 81 (248)
T ss_pred HHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCCHHHHCCCCC---CCCCCCH
T ss_conf 999998633027999858--99999999999998899999999---999999753204685376438634---5645787
Q ss_pred HHHHHHHHHHH--HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 48999999987--60598854144316654324899999998751127549998243665558999999
Q gi|254780947|r 629 DQEKAIDAVIQ--DLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFS 695 (1187)
Q Consensus 629 DQ~~AI~eV~~--Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~ 695 (1187)
+|.+|+..-+. +==....-.=+.+|..|-|||-.|.=-+-+|+..|+-|.+..-+. |.++-..++.
T Consensus 82 ~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~d-Lv~~L~~a~~ 149 (248)
T PRK12377 82 GQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD-VMSRLHESYD 149 (248)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH-HHHHHHHHHH
T ss_conf 8999999999999987318860899899998788999999999998799699988999-9999999998
No 154
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.00 E-value=0.3 Score=28.40 Aligned_cols=244 Identities=16% Similarity=0.238 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCCCC------CCCCCHHHHHCCCCCCEEEEECC---CC
Q ss_conf 999999999986798299995894----589999986776488733------23452245520466847999810---44
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASSQ----GALQHLIHLIESHGFKKI------KKINTLTEINSLLKEEIAAVILP---IN 461 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s~----~~~eRL~elL~e~gI~~~------~~~~~~~~~~~~~~~~i~i~~~~---L~ 461 (1187)
-.++. +-..+.+||++.+.++|+ ..++.+.++|..+++... .....-........|.+.+++|. +.
T Consensus 344 VA~la-~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiq 422 (721)
T TIGR00643 344 VAALA-MLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQ 422 (721)
T ss_pred HHHHH-HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf 99999-99998469809991776899999999999962354857888615667878999999986395205733135545
Q ss_pred CCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 68746--6568871200137311122122222221101224440323511203554233112310145666663599998
Q gi|254780947|r 462 QGFET--KHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHY 539 (1187)
Q Consensus 462 ~GF~~--~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeY 539 (1187)
+..+. -.++||-|.-=||-..+..=+ .|...++.+
T Consensus 423 e~vef~~L~lVIiDEQHRFGV~QR~~L~-~KG~~~~~~------------------------------------------ 459 (721)
T TIGR00643 423 EKVEFKRLGLVIIDEQHRFGVEQRKKLR-EKGQEGSMI------------------------------------------ 459 (721)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHH-HHHHCCCCC------------------------------------------
T ss_conf 2144314774899323356078999999-862206886------------------------------------------
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------HH
Q ss_conf 699879966675211110036788853234340348999999999999999999999998874015677878------46
Q gi|254780947|r 540 ADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVS------QD 613 (1187)
Q Consensus 540 a~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d------~~ 613 (1187)
.+.|+ ||
T Consensus 460 -------------------------------------------------------------------G~~PH~L~MtATP 472 (721)
T TIGR00643 460 -------------------------------------------------------------------GFAPHVLVMTATP 472 (721)
T ss_pred -------------------------------------------------------------------CCCCCEEEEECCC
T ss_conf -------------------------------------------------------------------7777764663788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----CCCCCEE------EECCCCCCHHHHHHHHHHHHHCCCCEEEEEECH
Q ss_conf 789899848888874489999999876059----8854144------316654324899999998751127549998243
Q gi|254780947|r 614 LYSQFIKRFPHVETEDQEKAIDAVIQDLSS----GRLMDRL------ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPT 683 (1187)
Q Consensus 614 ~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes----~~PMDRL------iCGDVGfGKTEVA~RAafkav~~gkQvavlvPT 683 (1187)
.=|-++ =.|..||+- .-|-=|- +-.+===.-+|-.++-.=+.+..|+||=|++|-
T Consensus 473 IPRTLA---------------Lt~yGDld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~GrQaYvv~Pl 537 (721)
T TIGR00643 473 IPRTLA---------------LTVYGDLDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKGRQAYVVYPL 537 (721)
T ss_pred CHHHHH---------------HHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 147899---------------77650000334316854593389988842788775689999999998328908999644
Q ss_pred ----HHH-----HHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEE
Q ss_conf ----665-----558999999860-6789833541066630256777753122576089852065427852023656997
Q gi|254780947|r 684 ----TLL-----VRQHFRLFSERF-QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIII 753 (1187)
Q Consensus 684 ----TiL-----a~QH~~tf~~Rf-~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLlii 753 (1187)
=.| |+.-|+..++-| ..| +|++|--==+.+|+.+|++.+++|++||+|-|- ++==.|.-.|.-+.||
T Consensus 538 I~ESE~lp~lk~A~~~~~~l~~~f~~~~--~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsTT-VIEVGVDVPnAtvMVI 614 (721)
T TIGR00643 538 IEESEKLPDLKAAEALYERLKKAFLPKY--NVGLLHGRMKSDEKEAVMEEFREGEVDILVSTT-VIEVGVDVPNATVMVI 614 (721)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEE-EEEEEEECCCCCEEEE
T ss_conf 0320047168999999999888612210--011330689847899999985215836999976-8999861797727888
Q ss_pred ECHHHHHHHHHHHH
Q ss_conf 22233008889988
Q gi|254780947|r 754 DEEQHFGVKHKEAL 767 (1187)
Q Consensus 754 DEEqrFGV~~Ke~l 767 (1187)
=-=.|||-.|=-.|
T Consensus 615 e~AeRFGLSQLHQL 628 (721)
T TIGR00643 615 EDAERFGLSQLHQL 628 (721)
T ss_pred ECCCHHHHHHHHHH
T ss_conf 66551036888763
No 155
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.92 E-value=0.23 Score=29.30 Aligned_cols=90 Identities=7% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCEEEECCCCCCHHHHHHH--HHHH---C------CCC--EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHC
Q ss_conf 8608980376522799999--9986---2------998--9999299899999999999857998099857224670100
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILA--EIAR---L------GLS--LVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDR 81 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla--~l~~---~------~rp--ilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~ 81 (1187)
++.+.+.-=+||+|++... .|.+ . .+| .||++|+.+-|.++++.+..|.....+... .-|..
T Consensus 38 GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTRELA~Qi~~~~~~l~~~~~~~~~-----~~~Gg 112 (457)
T PRK10590 38 GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSL-----VVFGG 112 (457)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEE-----EEECC
T ss_conf 9988998898118999999999999863676544568824999768799999999999974255894599-----99799
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 48998999999999999841244688769995667852369
Q gi|254780947|r 82 VSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 82 ~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
.+... .+.. | ...+.|||+|+.-|+..+
T Consensus 113 ~~~~~-----q~~~---l-----~~~~dIlVaTPGRLldl~ 140 (457)
T PRK10590 113 VSINP-----QMMK---L-----RGGVDVLVATPGRLLDLE 140 (457)
T ss_pred CCHHH-----HHHH---H-----CCCCCEEEECCHHHHHHH
T ss_conf 77759-----9998---6-----189998998928889888
No 156
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.89 E-value=0.15 Score=30.60 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCEEEECCCCCCHHHHHH--HHHHH---C--------CCC-EEEEECCHHHHHHHHHHHHHHCCCC--EEEECCCCCCCC
Q ss_conf 860898037652279999--99986---2--------998-9999299899999999999857998--099857224670
Q gi|254780947|r 15 CKKITLSPVIDGTEGFIL--AEIAR---L--------GLS-LVYICSDERILINLKKILTLVVPDI--RVIIFPAWDCLP 78 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~alll--a~l~~---~--------~rp-ilvI~~d~~~A~~l~~dL~~f~~~~--~V~~FP~~E~LP 78 (1187)
++.+.+..=+||+|++.. --+.+ . +.| .|||+|+.+-|.++++.+..+.... .|..+
T Consensus 121 GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~------- 193 (472)
T PRK01297 121 GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTF------- 193 (472)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE-------
T ss_conf 9988998999867999999999999971775101136895299987999999999999999746279769999-------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCC
Q ss_conf 10048998999999999999841244688769995667852369
Q gi|254780947|r 79 YDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRS 122 (1187)
Q Consensus 79 Yd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqkl 122 (1187)
+... +.. +..+ .|. .+.+.|||+|+.-|+..+
T Consensus 194 ~GG~----~~~-~q~~---~l~----~~~~dIvVaTPGRL~~l~ 225 (472)
T PRK01297 194 VGGM----DFD-KQLK---QLE----ARFCDILVATPGRLLDFN 225 (472)
T ss_pred ECCC----CHH-HHHH---HHH----CCCCCEEEECHHHHHHHH
T ss_conf 7898----879-9999---985----589988997979999874
No 157
>KOG0953 consensus
Probab=94.86 E-value=0.11 Score=31.65 Aligned_cols=307 Identities=22% Similarity=0.322 Sum_probs=187.1
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH----HHHCCCCCCH
Q ss_conf 111100367888532343403489999999999999999999999988740156778784678989----9848888874
Q gi|254780947|r 553 DLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQF----IKRFPHVETE 628 (1187)
Q Consensus 553 ~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eF----e~~FpyeET~ 628 (1187)
.-...|....+.+.+++|+... +...+|..+. +..+..| ...||-.+-+
T Consensus 115 ~sf~~~~~~~~~l~~~~l~i~~-------------------------~di~~g~~~~--~~lfp~f~~~~k~~fp~l~~~ 167 (700)
T KOG0953 115 ISFRIYCNKSEFLDVDSLHILT-------------------------NDIRKGAKDI--DFLFPFFLRHAKQEFPELTRM 167 (700)
T ss_pred HHHHHHHCCHHCCCCCHHHHHH-------------------------HHHHCCCCCH--HHHHHHHHHHHHHHHCCCCCC
T ss_conf 7899871644115611233204-------------------------4565078862--232067888787771203360
Q ss_pred HHHHHHHHHHHHCCCC-------CCCCEEE---ECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 4899999998760598-------8541443---16654324899999998751127549998243665558999999860
Q gi|254780947|r 629 DQEKAIDAVIQDLSSG-------RLMDRLI---CGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERF 698 (1187)
Q Consensus 629 DQ~~AI~eV~~Dmes~-------~PMDRLi---CGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf 698 (1187)
|-++-| .|+..| +-|-|=| ||----|||==|+- -|+.+.+| .+--|-++||.--|+-+.
T Consensus 168 Ddl~~i----sDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALq-rl~~aksG---vycGPLrLLA~EV~~r~n--- 236 (700)
T KOG0953 168 DDLKKI----SDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQ-RLKSAKSG---VYCGPLRLLAHEVYDRLN--- 236 (700)
T ss_pred HHHHHH----HCCCCCCCCCCHHHHHHHEEEEEECCCCCCHHHHHHH-HHHHHCCC---EECCHHHHHHHHHHHHHH---
T ss_conf 255554----3047985448256754315898757888842579999-87540266---002608989999998764---
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHH--------------HHHHHH
Q ss_conf 678983354106663025677775312257608985206542785202365699722233--------------008889
Q gi|254780947|r 699 QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQH--------------FGVKHK 764 (1187)
Q Consensus 699 ~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqr--------------FGV~~K 764 (1187)
.-+|.-.++ |--|.+-+... ......|=+|--..|-+-.|. ..||||=|- .|+..|
T Consensus 237 -a~gipCdL~----TGeE~~~~~~~--~~~a~hvScTVEM~sv~~~ye---VAViDEIQmm~Dp~RGwAWTrALLGl~Ad 306 (700)
T KOG0953 237 -ALGIPCDLL----TGEERRFVLDN--GNPAQHVSCTVEMVSVNTPYE---VAVIDEIQMMRDPSRGWAWTRALLGLAAD 306 (700)
T ss_pred -HCCCCCCCC----CCCEEEECCCC--CCCCCCEEEEEEEEECCCCEE---EEEEHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf -328873344----46125405788--886651478999840687057---88766677622765235999998744055
Q ss_pred HHHHHCCCCCCEE-EEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHH--HCCEEEEEE
Q ss_conf 9886316788489-9953534088999971222541220157887753799985797898999998987--188599982
Q gi|254780947|r 765 EALKETHTGVHVL-TLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYY--RGGQSFYVC 841 (1187)
Q Consensus 765 e~lk~~~~~vdvL-tlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~--RgGQvf~v~ 841 (1187)
|- |+- -=||-||-|.+ +.++| +-..|++|= ..++-.+.+-+.-+++ |-|-.- |+
T Consensus 307 Ei--------HLCGepsvldlV~~i-~k~TG------------d~vev~~Ye-Rl~pL~v~~~~~~sl~nlk~GDCv-V~ 363 (700)
T KOG0953 307 EI--------HLCGEPSVLDLVRKI-LKMTG------------DDVEVREYE-RLSPLVVEETALGSLSNLKPGDCV-VA 363 (700)
T ss_pred HH--------HCCCCCHHHHHHHHH-HHHCC------------CEEEEEEEC-CCCCCEEHHHHHHHHCCCCCCCEE-EE
T ss_conf 61--------005880489999999-86317------------814897600-057650004232023068888769-99
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCEEEECCCEECCCCCCCCCEEEEECH------
Q ss_conf 6446928899999861654648886134674789999999963--88757976102003633223326676250------
Q gi|254780947|r 842 PRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYE--GQYDVLLSTSIVESGLDLPKANTMIVQRA------ 913 (1187)
Q Consensus 842 nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~--~~~dvLv~TtIiEsGlDip~aNTiii~~a------ 913 (1187)
=--.+|......|.+--- -+.+|..|-+++..--.--..|.+ +++||||+|--|-.||... .--||-+.-
T Consensus 364 FSkk~I~~~k~kIE~~g~-~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~ 441 (700)
T KOG0953 364 FSKKDIFTVKKKIEKAGN-HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGR 441 (700)
T ss_pred EEHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC-EEEEEEEECCCCCCC
T ss_conf 411148888999998558-554899558997306888987379887625688623214554443-117987503567766
Q ss_pred --HHCCCCHHHHHHHHCCCCC
Q ss_conf --2358860455322103567
Q gi|254780947|r 914 --DMFGLAQLYQLRGRVGRSK 932 (1187)
Q Consensus 914 --d~~GLaqlyQlrGRVGRs~ 932 (1187)
.-.--||.-|+-||-||-.
T Consensus 442 e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953 442 ETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred CCEECCHHHHHHHHHCCCCCC
T ss_conf 210256899998851015445
No 158
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.79 E-value=0.16 Score=30.44 Aligned_cols=76 Identities=8% Similarity=0.108 Sum_probs=53.2
Q ss_pred CHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCC----CCHHH--HHCCCCCCEEEEECCCC
Q ss_conf 0001858999999999986798299995894589999986776488733234----52245--52046684799981044
Q gi|254780947|r 388 WESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKI----NTLTE--INSLLKEEIAAVILPIN 461 (1187)
Q Consensus 388 ~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~----~~~~~--~~~~~~~~i~i~~~~L~ 461 (1187)
.....++..+++++....+.|..|++-+.|-...|.|+.+|...||+...-. ..-++ ...-.+|.|.+..-=-.
T Consensus 429 ~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~L~~~gi~h~VLNAk~h~~EA~Iia~AG~~gaVTIATNMAG 508 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMAG 508 (908)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 58999999999999999975998899505289999999999746785301048876889999995499998798333678
Q ss_pred CC
Q ss_conf 68
Q gi|254780947|r 462 QG 463 (1187)
Q Consensus 462 ~G 463 (1187)
+|
T Consensus 509 RG 510 (908)
T PRK13107 509 RG 510 (908)
T ss_pred CC
T ss_conf 98
No 159
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.76 E-value=0.25 Score=29.02 Aligned_cols=121 Identities=12% Similarity=0.219 Sum_probs=59.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCC-------CEEEECCCCCCCCHHCCCC
Q ss_conf 608980376522799999998----62998999929989999999999985799-------8099857224670100489
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPD-------IRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~-------~~V~~FP~~E~LPYd~~sp 84 (1187)
.-+.+.|-+|++|+.+..+++ +.+.++++|+- +....++.+..+.|.-| ....++|.+.. ++
T Consensus 25 s~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~-e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~-----~~- 97 (230)
T PRK08533 25 SIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSS-QLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPL-----LS- 97 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCC-----CC-
T ss_conf 489998689987899999999999878986999994-38999999999986998179975796799961343-----35-
Q ss_pred CHHHHHHHHHHHHHHHHCCC-CCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEC
Q ss_conf 98999999999999841244-688769995667852369986688515489940974199999999998288455
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNS-SKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRV 158 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~-~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv 158 (1187)
-...+-..|.+|..... .+...|||-|..+++..-..++. ..++-...+++.+.|-.=.
T Consensus 98 ---~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~------------~~~~~~~lk~l~s~gktIi 157 (230)
T PRK08533 98 ---GNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQ------------IRDLMAFFKRISSLNKVII 157 (230)
T ss_pred ---CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHH------------HHHHHHHHHHHHHCCCEEE
T ss_conf ---40457899999973266437989999053188516777899------------9999999999985898899
No 160
>KOG0389 consensus
Probab=94.45 E-value=0.43 Score=27.14 Aligned_cols=224 Identities=18% Similarity=0.309 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC----CCCEEEEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 87448999999987605988541443166543248999999987511----27549998243665558999999860678
Q gi|254780947|r 626 ETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVM----NGLQVAVIAPTTLLVRQHFRLFSERFQGF 701 (1187)
Q Consensus 626 ET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~----~gkQvavlvPTTiLa~QH~~tf~~Rf~~~ 701 (1187)
.-+=|+--++=.. |--.+-|.-.+.-+.|-|||==++ ||.|.. ..----|+||.-.| ++...-|+.|
T Consensus 400 LkdYQlvGvNWL~--Llyk~~l~gILADEMGLGKTiQvI--aFlayLkq~g~~gpHLVVvPsSTl-----eNWlrEf~kw 470 (941)
T KOG0389 400 LKDYQLVGVNWLL--LLYKKKLNGILADEMGLGKTIQVI--AFLAYLKQIGNPGPHLVVVPSSTL-----ENWLREFAKW 470 (941)
T ss_pred CCCHHHHHHHHHH--HHHHCCCCCEEHHHCCCCCHHHHH--HHHHHHHHCCCCCCCEEEECCHHH-----HHHHHHHHHH
T ss_conf 3422202289999--999742330532220576334899--999999972999983799203168-----8899999975
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCC--CCEEEEECHHHHC---CCCCC---CCCCEEEEECHHHHHHHHHHHHHHC---
Q ss_conf 98335410666302567777531225--7608985206542---78520---2365699722233008889988631---
Q gi|254780947|r 702 SVRIASISRFVQTKEAALHKKSITEG--QVDIVIGTHALLN---PKITF---ANLGLIIIDEEQHFGVKHKEALKET--- 770 (1187)
Q Consensus 702 pv~i~~lsRf~~~~e~~~i~~~l~~G--~idiviGTH~ll~---~~v~f---~~LgLliiDEEqrFGV~~Ke~lk~~--- 770 (1187)
--...++.=.-|..|.+++...++++ ..||++-|-.|.. .|..| .++--+|.||-|-.-=+--|+.|.|
T Consensus 471 CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I 550 (941)
T KOG0389 471 CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSI 550 (941)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHCCCHHHHHHHCCC
T ss_conf 97528774157689999999998616888528998721103886778999866666799613265421334988875064
Q ss_pred CCCCCEEEEECCCCCHHHH--HHH----------HCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHH--HHHCCE
Q ss_conf 6788489995353408899--997----------12225412201578877537999857978989999989--871885
Q gi|254780947|r 771 HTGVHVLTLSATPIPRTLQ--LAI----------TGVRELSLISMPPINRIACRTSISIFDPLVVRETLMRE--YYRGGQ 836 (1187)
Q Consensus 771 ~~~vdvLtlsATPIPRTL~--msl----------~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rE--l~RgGQ 836 (1187)
.+|- -|-||-||.---|. ||| +++-|+-+|-+ .++-- +.-+.+|+.-+ +.|--+
T Consensus 551 ~An~-RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~-------~k~~~----d~d~e~~~l~qerIsrAK~ 618 (941)
T KOG0389 551 NANF-RLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFK-------AKKTS----DGDIENALLSQERISRAKT 618 (941)
T ss_pred CCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-------CCCCC----CCHHHHHHHHHHHHHHHHH
T ss_conf 6553-5885187420129999999999745755322247999982-------46776----4304677889999999997
Q ss_pred EE--EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 99--98264469288999998616546488861346747899
Q gi|254780947|r 837 SF--YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLE 876 (1187)
Q Consensus 837 vf--~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le 876 (1187)
+- ||--| ....-|+.|.|... -|-|--|++.+..
T Consensus 619 im~PFILRR-----~K~qVL~~LPpK~~-~Ie~c~mse~Q~~ 654 (941)
T KOG0389 619 IMKPFILRR-----LKSQVLKQLPPKIQ-RIEYCEMSEKQKQ 654 (941)
T ss_pred HHHHHHHHH-----HHHHHHHHCCCCCC-EEEEEECCHHHHH
T ss_conf 542788999-----89989874697432-5676424638999
No 161
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=94.44 E-value=0.28 Score=28.62 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=37.8
Q ss_pred EEEECCCCCCHHHHHHHHHH-H-----CCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 08980376522799999998-6-----299899992998999999999998579
Q gi|254780947|r 17 KITLSPVIDGTEGFILAEIA-R-----LGLSLVYICSDERILINLKKILTLVVP 64 (1187)
Q Consensus 17 ~i~l~Gl~gs~~allla~l~-~-----~~rpilvI~~d~~~A~~l~~dL~~f~~ 64 (1187)
-+.++|.+|++|++++..|. . .+.+.++++.|......++..|..-.+
T Consensus 3 v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~ 56 (348)
T pfam09848 3 VFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLK 56 (348)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999977799389999999999986440268208995786699999999860412
No 162
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=94.37 E-value=0.072 Score=33.12 Aligned_cols=61 Identities=13% Similarity=0.352 Sum_probs=52.2
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEEC
Q ss_conf 99860678983354106663025677775312257608985206542785202365699722
Q gi|254780947|r 694 FSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDE 755 (1187)
Q Consensus 694 f~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDE 755 (1187)
+.+.|...++++..+.-=.++++++++++.+++|+++|+|+| .+++..+.+.+.-.+|+-+
T Consensus 3 l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t-~~~~~Gidl~~~~~vI~~~ 63 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVAT-DVAERGLDLPGVDLVIIYD 63 (82)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EEEEEECCCCCCCEEEEEC
T ss_conf 899998889919999896999999999999987997199995-0242114898899999978
No 163
>KOG1123 consensus
Probab=94.37 E-value=0.45 Score=27.01 Aligned_cols=331 Identities=18% Similarity=0.196 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999999999999887401567787846789899848888874489999999876059885414431665432
Q gi|254780947|r 579 KANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFG 658 (1187)
Q Consensus 579 K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfG 658 (1187)
-+-+||+-.++---||+=|--|.-..-.....|-- -= -.--|=|.++..-. ...++.---.|.=--|-|
T Consensus 264 vE~vkkRCieidyPlLeEYDFRND~~npdl~idLK---Ps-----t~iRpYQEksL~KM---FGNgRARSGiIVLPCGAG 332 (776)
T KOG1123 264 VETVKKRCIEIDYPLLEEYDFRNDNVNPDLDIDLK---PS-----TQIRPYQEKSLSKM---FGNGRARSGIIVLPCGAG 332 (776)
T ss_pred HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC---CC-----CCCCCHHHHHHHHH---HCCCCCCCCEEEEECCCC
T ss_conf 99998654105752565414346777999886768---54-----55575378789997---378854476189856998
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf 48999999987511275499982436655589999998606789833541066630256777753122576089852065
Q gi|254780947|r 659 KTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHAL 738 (1187)
Q Consensus 659 KTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~l 738 (1187)
||=|-+-||.. =.|-|.|||-..|=.+|--+-|+..-. +.=..+.||.|... +-..+..+|||-|-..
T Consensus 333 KtLVGvTAa~t---ikK~clvLcts~VSVeQWkqQfk~wst---i~d~~i~rFTsd~K------e~~~~~~gvvvsTYsM 400 (776)
T KOG1123 333 KTLVGVTAACT---IKKSCLVLCTSAVSVEQWKQQFKQWST---IQDDQICRFTSDAK------ERFPSGAGVVVTTYSM 400 (776)
T ss_pred CCEEEEEEEEE---ECCCEEEEECCCCCHHHHHHHHHHHHC---CCCCCEEEEECCCC------CCCCCCCCEEEEEEEH
T ss_conf 74254555545---514279995575669999999874501---68554577202445------4578988579987313
Q ss_pred HCCC-------------CCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCC
Q ss_conf 4278-------------520236569972223300888998863167884899953534088999971222541220157
Q gi|254780947|r 739 LNPK-------------ITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPP 805 (1187)
Q Consensus 739 l~~~-------------v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP 805 (1187)
+... +.=..-||++.||=|---.+-=-+.-.+-..---|-||||-.--- --|-||-.+--|-
T Consensus 401 va~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcKLGLTATLvRED-----dKI~DLNFLIGPK 475 (776)
T KOG1123 401 VAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCKLGLTATLVRED-----DKITDLNFLIGPK 475 (776)
T ss_pred HHHCCCCCHHHHHHHHHHHCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-----CCCCCCCEEECCH
T ss_conf 11056642779999999843710168842111126999999999999876126514785126-----6333330000543
Q ss_pred --------------------------------------CCCCCEEEEEEECCHHHHHH-HHHHHHHHCCEEEEEECCCCC
Q ss_conf --------------------------------------88775379998579789899-999898718859998264469
Q gi|254780947|r 806 --------------------------------------INRIACRTSISIFDPLVVRE-TLMREYYRGGQSFYVCPRLSD 846 (1187)
Q Consensus 806 --------------------------------------~~R~~v~T~v~~~~~~~i~~-ai~rEl~RgGQvf~v~nrv~~ 846 (1187)
.-|.-..-||+--+.--+-+ -|..--.||--+..--..|--
T Consensus 476 lYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123 476 LYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred HHHCCHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 21124898974780467765314557788999999853145441224417403378899999998649838998250889
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH-CCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHH
Q ss_conf 2889999986165464888613467478999999996-388757976102003633223326676250235886045532
Q gi|254780947|r 847 LEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFY-EGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLR 925 (1187)
Q Consensus 847 i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~-~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlr 925 (1187)
+.+-|-++.+ -+..|--+..|--++...|. |-+++-..-.-.=.|-+|+|-||.+|---++-=.--|=-|==
T Consensus 556 Lk~YAikl~K-------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRL 628 (776)
T KOG1123 556 LKEYAIKLGK-------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRL 628 (776)
T ss_pred HHHHHHHCCC-------CEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9999997089-------637788855589999985344873334887503576556776608999724566227899998
Q ss_pred HHCCCCCCC------CEEEEEECCC
Q ss_conf 210356767------3699996688
Q gi|254780947|r 926 GRVGRSKIA------SFALFLLPEN 944 (1187)
Q Consensus 926 GRVGRs~~~------ayayl~~~~~ 944 (1187)
||+=|..++ ||-|=++..+
T Consensus 629 GRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123 629 GRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 8998776337602000244431064
No 164
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.34 E-value=0.45 Score=26.98 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCCCCCCEEEEEEECCHHHHHHHHHHHHHH-----CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH-HH
Q ss_conf 1578877537999857978989999989871-----88599982644692889999986165464888613467478-99
Q gi|254780947|r 803 MPPINRIACRTSISIFDPLVVRETLMREYYR-----GGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKN-LE 876 (1187)
Q Consensus 803 tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~R-----gGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~-le 876 (1187)
-||..+-+......+-....--+++.+++.+ +|..|.+..--+.++.+++.++.-+|. .+-+-+++.+..+ ++
T Consensus 434 l~p~~~d~~~~~~~~e~~~~~~~~l~~~l~~li~~~~Gr~LvLFTS~r~~~~~ae~l~~~l~~-~~l~Qge~~~~~~l~~ 512 (636)
T TIGR03117 434 LRPVGKDEQGDANLQEAERTWLENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPA-EIVIQSEKNRLASAEQ 512 (636)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCC-CEEEECCCCCHHHHHH
T ss_conf 798777776531000356668999999999999870798899704099999999999722788-6587457640356899
Q ss_pred HHHHHHHCCCCCEEEECCCEECCCCCCCCC
Q ss_conf 999999638875797610200363322332
Q gi|254780947|r 877 DKMNAFYEGQYDVLLSTSIVESGLDLPKAN 906 (1187)
Q Consensus 877 ~~m~~F~~~~~dvLv~TtIiEsGlDip~aN 906 (1187)
+-+..|.+++--||++|.=-=-|+|+|-.+
T Consensus 513 ~~~~~f~~~~~svLfGT~SfWEGVDvpG~~ 542 (636)
T TIGR03117 513 QFLALYANGIQPVLIAAGGAWTGIDLTHKP 542 (636)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 999987278996898677640662578866
No 165
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.25 E-value=0.24 Score=29.16 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=53.6
Q ss_pred CEEEECCCCCCHHHHHHHH-H----HH-CCCCEEEEECCHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCHHCCCCCHHH
Q ss_conf 6089803765227999999-9----86-2998999929989999999999985799-80998572246701004899899
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAE-I----AR-LGLSLVYICSDERILINLKKILTLVVPD-IRVIIFPAWDCLPYDRVSPSPYV 88 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~-l----~~-~~rpilvI~~d~~~A~~l~~dL~~f~~~-~~V~~FP~~E~LPYd~~sp~~di 88 (1187)
+.+.+.+-+|++|++.+.. + .+ .++.+++++|...-+.++++.++.+.+. ..+.++ +...+..
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~-------~~~~~~~--- 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYL-------IGGTSIK--- 70 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEE-------ECCCCHH---
T ss_conf 999998899717999999999999975689769997467999999999999974887179999-------6136367---
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC
Q ss_conf 99999999998412446887699956678523699
Q gi|254780947|r 89 VTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSV 123 (1187)
Q Consensus 89 ~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp 123 (1187)
++. ... ...+.|+|+|+..+...+.
T Consensus 71 --~~~----~~~----~~~~~ilv~T~~~l~~~~~ 95 (144)
T cd00046 71 --QQE----KLL----SGKTDIVVGTPGRLLDELE 95 (144)
T ss_pred --HHH----HHH----CCCCCEEECCHHHHHHHHH
T ss_conf --789----874----5898499828899999997
No 166
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=94.12 E-value=0.11 Score=31.69 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHH--HHHHHHC
Q ss_conf 3765227999999986----2998999929989999999--9999857
Q gi|254780947|r 22 PVIDGTEGFILAEIAR----LGLSLVYICSDERILINLK--KILTLVV 63 (1187)
Q Consensus 22 Gl~gs~~allla~l~~----~~rpilvI~~d~~~A~~l~--~dL~~f~ 63 (1187)
|-.|++|++++.++.+ .++.+++.+++...|..+. ..+..|+
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~~~v~vtA~TGiAA~~i~gG~TiHs~~ 48 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRGKIVLNVASSGIAALLLPGGRTAHSRF 48 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEHHHCC
T ss_conf 979887999999999999768988999896899985169987398526
No 167
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=94.10 E-value=0.5 Score=26.68 Aligned_cols=89 Identities=11% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCEEEECCCCCCHHHHHH--HHHHHC----CC-CEEEEECCHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCHHCCCC
Q ss_conf 860898037652279999--999862----99-89999299899999999999857---998099857224670100489
Q gi|254780947|r 15 CKKITLSPVIDGTEGFIL--AEIARL----GL-SLVYICSDERILINLKKILTLVV---PDIRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~alll--a~l~~~----~r-pilvI~~d~~~A~~l~~dL~~f~---~~~~V~~FP~~E~LPYd~~sp 84 (1187)
++.+.+..=+||+|+++. .-+.+. .+ -.||+||+.+-|.|.+++++.+. ++..|..+ |...+.
T Consensus 41 G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~~l-------~GG~~~ 113 (459)
T PRK11776 41 GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTL-------CGGVPM 113 (459)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEE-------ECCCCH
T ss_conf 9988998899858999999999984113678985999967599999999999999850588259999-------899327
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC
Q ss_conf 989999999999998412446887699956678523699
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSV 123 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp 123 (1187)
......|. ..+.|||+|+.-++..+-
T Consensus 114 -----~~q~~~L~--------~~~~IvV~TPGRl~d~l~ 139 (459)
T PRK11776 114 -----GPQIGSLE--------HGAHIIVGTPGRILDHLR 139 (459)
T ss_pred -----HHHHHHHH--------CCCCEEEECCHHHHHHHH
T ss_conf -----99999974--------699999989589998875
No 168
>KOG0924 consensus
Probab=93.83 E-value=0.56 Score=26.26 Aligned_cols=437 Identities=17% Similarity=0.216 Sum_probs=248.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC----CEEEEEECHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 44316654324899999998751127----5499982436655589999998606-789833541066630256777753
Q gi|254780947|r 649 RLICGDVGFGKTEIALRAAFIAVMNG----LQVAVIAPTTLLVRQHFRLFSERFQ-GFSVRIASISRFVQTKEAALHKKS 723 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~RAafkav~~g----kQvavlvPTTiLa~QH~~tf~~Rf~-~~pv~i~~lsRf~~~~e~~~i~~~ 723 (1187)
-+|.|.-|-|||--- |-|. ..+| .-+..--|--|-|---..+..+-|. ..+-.|+.-=||-.-..+.-.++=
T Consensus 374 vvivgETGSGKTTQl--~QyL-~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Iky 450 (1042)
T KOG0924 374 VVIVGETGSGKTTQL--AQYL-YEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKY 450 (1042)
T ss_pred EEEEECCCCCCHHHH--HHHH-HHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 999935889850166--7999-8622455871543572278999999999998587645311248885204787605787
Q ss_pred HCCCCCEEEEECHHHHCCCCCCC---CCCEEEEECHHH--------HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 12257608985206542785202---365699722233--------0088899886316788489995353408899997
Q gi|254780947|r 724 ITEGQVDIVIGTHALLNPKITFA---NLGLIIIDEEQH--------FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAI 792 (1187)
Q Consensus 724 l~~G~idiviGTH~ll~~~v~f~---~LgLliiDEEqr--------FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl 792 (1187)
+.+|- ||...+.=+ .-..+|+||-|- ||.- |+.++. |.+.-++-.|||==---+.--.
T Consensus 451 mTDGi---------LLrEsL~d~~L~kYSviImDEAHERslNtDilfGll-k~~lar-RrdlKliVtSATm~a~kf~nfF 519 (1042)
T KOG0924 451 MTDGI---------LLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLL-KKVLAR-RRDLKLIVTSATMDAQKFSNFF 519 (1042)
T ss_pred ECCCH---------HHHHHHHHHHHHHEEEEEECHHHHCCCCHHHHHHHH-HHHHHH-HCCCEEEEEECCCCHHHHHHHH
T ss_conf 42305---------779776330044401788511433030058999999-999874-2263599762202489998872
Q ss_pred HCCCCCCEEECCCCCCCCEEEEEEECC-HHHHHHHHHHH----HH-HCCEEEEEECCCCCHHHHHHHHHHHC------C-
Q ss_conf 122254122015788775379998579-78989999989----87-18859998264469288999998616------5-
Q gi|254780947|r 793 TGVRELSLISMPPINRIACRTSISIFD-PLVVRETLMRE----YY-RGGQSFYVCPRLSDLEKCYTFLQSEV------P- 859 (1187)
Q Consensus 793 ~g~rd~S~i~tpP~~R~~v~T~v~~~~-~~~i~~ai~rE----l~-RgGQvf~v~nrv~~i~~~~~~l~~l~------p- 859 (1187)
.+.--+ |-|-.-+||+|.-..-. +.-|..|+.+- +. +.|-+..--.--++|+.+...|++-+ |
T Consensus 520 gn~p~f----~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~ 595 (1042)
T KOG0924 520 GNCPQF----TIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPT 595 (1042)
T ss_pred CCCCEE----EECCCCCCEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 788601----0158764237775268558899998765458544689887799527876326789999999975523888
Q ss_pred -CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEE--------EECHHHCCC----------CH
Q ss_conf -46488861346747899999999638875797610200363322332667--------625023588----------60
Q gi|254780947|r 860 -ELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI--------VQRADMFGL----------AQ 920 (1187)
Q Consensus 860 -~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTii--------i~~ad~~GL----------aq 920 (1187)
+.+|--...||++.---++..+--.|.--+.|+|.|-||-|-||+---.| +.+. +.|| |+
T Consensus 596 ~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~-~~G~D~L~~~pIS~An 674 (1042)
T KOG0924 596 TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP-RIGMDALQIVPISQAN 674 (1042)
T ss_pred CCEEEEEEHHHCCHHHHHHHCCCCCCCCEEEEEECCCHHHCEEECCEEEEEECCCEEEEECCC-CCCCCEEEEEECHHCC
T ss_conf 862788405528666664330568888126998622112113326648997257245641056-6564225787512213
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC--------CCCHHHHHHHH-------H-----HHHHCCC----CHHHHHHHHHHH
Q ss_conf 4553221035676736999966888--------88988999999-------9-----9972556----524899999985
Q gi|254780947|r 921 LYQLRGRVGRSKIASFALFLLPENR--------PLTAAAQKRLR-------I-----LQSLNTL----GAGFQLASYDLD 976 (1187)
Q Consensus 921 lyQlrGRVGRs~~~ayayl~~~~~~--------~l~~~a~kRL~-------a-----i~~~~~l----GsGf~iA~~Dle 976 (1187)
--|=-||-||.. -+-||=+|..+. .+.|.-+--|. + |..|.-+ --++.=||.-|-
T Consensus 675 A~QRaGRAGRt~-pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw 753 (1042)
T KOG0924 675 ADQRAGRAGRTG-PGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLW 753 (1042)
T ss_pred CHHHCCCCCCCC-CCCEEEEHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 101124457889-9626530236677764045787055523625589999864806652788678987788999999888
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHH--------HHHHHHHHHH-----H-------HH---------CCCCC----------
Q ss_conf 11630004611155389833899--------9999999999-----9-------82---------88876----------
Q gi|254780947|r 977 IRGTGNLLGEEQSGHIREIGFEL--------YQKMLEETVA-----S-------IK---------GQKDL---------- 1017 (1187)
Q Consensus 977 iRGaG~llG~~QsG~i~~vG~~l--------y~~ml~~av~-----~-------~k---------g~~~~---------- 1017 (1187)
.=||=+- .|.+..+|-.| |.+||=-|.. + |. +....
T Consensus 754 ~LGAl~~-----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~ 828 (1042)
T KOG0924 754 TLGALDN-----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQV 828 (1042)
T ss_pred HHHCCCC-----CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 7502046-----78625656876417789168888998820682899999999844621143563300220667755257
Q ss_pred CCCCCCCEEECCCCCCC----CHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH
Q ss_conf 76666525654885116----734389988899999987508998999999999776248--898899999999999999
Q gi|254780947|r 1018 VESDWSPQVLIEASVMI----PESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFG--PLPIEVIHLLKVVFLKLL 1091 (1187)
Q Consensus 1018 ~~~~~~~~i~~~~~~~i----p~~yi~d~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG--~~P~~~~~l~~~~~lk~~ 1091 (1187)
.+.+.-+-.|+ +++++ |..|..|--.-..--+|..++ -.++.++..+|.=--- +==+-++..+..+..-+.
T Consensus 829 ~~sDhLTlLNV-f~qw~~~~~~~~WCnd~~l~~kaL~~arev--R~ql~~il~~l~~~l~S~~dwdivrKCIcs~~fhn~ 905 (1042)
T KOG0924 829 PESDHLTLLNV-FNQWRKNKYSSMWCNDHYLQVKALKKAREV--RRQLLEILKQLKLPLISSDDWDIVRKCICSAYFHNA 905 (1042)
T ss_pred CCCCHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88762119999-999986377124466656628999999999--999999999718775467529999999988998888
Q ss_pred HHHCCCEEEEECCCEEEEEECC
Q ss_conf 9986975999609859999638
Q gi|254780947|r 1092 CRIANIDKMDIGLKGIIIQFRH 1113 (1187)
Q Consensus 1092 ~~~~~i~~i~~~~~~~~~~f~~ 1113 (1187)
|+..|+-.----..++.....+
T Consensus 906 Arlkg~g~YV~~~tg~~c~lHP 927 (1042)
T KOG0924 906 ARLKGIGEYVNLSTGIPCHLHP 927 (1042)
T ss_pred HHHCCCCEEEECCCCCCEEECC
T ss_conf 9861674289705896022144
No 169
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.57 Score=26.22 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 34899999999999999999999999887401567787846789899848888874489999999876059885414431
Q gi|254780947|r 573 SAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLIC 652 (1187)
Q Consensus 573 ~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiC 652 (1187)
.+|+-..-.....-.+++..=-+-...|-.. -.++.+ --...|.-.|+=...-+++.++.+.-..++ ++..=+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--a~~p~~-k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~--~~~nl~l~ 111 (254)
T COG1484 37 KEWGYAEFLEYLLEEEKLAREARKIERRLRS--ASFPAK-KTFEEFDFEFQPGIDKKALEDLASLVEFFE--RGENLVLL 111 (254)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 6015789998326999999999999999986--168755-785430235885566999999999998732--58828998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 66543248999999987511275499982436655589999998
Q gi|254780947|r 653 GDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 653 GDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~ 696 (1187)
|+.|-|||-+|.=.|-.++..|.-| +.++++=|.++--+.|.+
T Consensus 112 G~~G~GKthLa~Ai~~~l~~~g~sv-~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 112 GPPGVGKTHLAIAIGNELLKAGISV-LFITAPDLLSKLKAAFDE 154 (254)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEE-EEEEHHHHHHHHHHHHHC
T ss_conf 9999879999999999999839849-998859999999998745
No 170
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=93.78 E-value=0.13 Score=31.18 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=49.6
Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEE
Q ss_conf 067898335410666302567777531225760898520654278520236569972
Q gi|254780947|r 698 FQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIID 754 (1187)
Q Consensus 698 f~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiD 754 (1187)
+....+++..++-=.++++++++++.+++|+++|+|+| ..++..+.+.+.-++|+-
T Consensus 3 l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t-~~~~~Gid~~~~~~vi~~ 58 (78)
T pfam00271 3 LRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVAT-DVAGRGIDLPDVNVVINY 58 (78)
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCEEEEE
T ss_conf 55689859998697999999999999987997399992-565256778789999997
No 171
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.50 E-value=0.58 Score=26.16 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=16.0
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 608980376522799999998
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA 36 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~ 36 (1187)
.-..+.|-+|++|+.++.+++
T Consensus 20 ~itEi~G~~GsGKTql~lqla 40 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999984999999999
No 172
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.38 E-value=0.66 Score=25.73 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCC
Q ss_conf 89999989871885999826446928899999861654648886134674789999999963887579761020036332
Q gi|254780947|r 823 VRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDL 902 (1187)
Q Consensus 823 i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDi 902 (1187)
+...|..=...+|+++.+.+.-+.++.+++.|++.- .. ..+.|. .....+....|-.++-.||+.|.--=-|+|+
T Consensus 636 la~~i~~l~~~~g~~LVLFTS~~~l~~v~~~L~~~~--~~-~L~Qg~--~gs~~~l~~rF~~~~~siLlGt~SFWEGVDl 710 (820)
T PRK07246 636 IAKRLESLKQEGQPILVLFNSKKHLLAVSDYLDQWQ--VS-HLAQEK--NGTAYNIKKRFDRGEQTILLGLGSFWEGVDF 710 (820)
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCC--CC-EEEECC--CCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 999999999749999999530999999999985379--97-788679--7679999999984899699976676466448
Q ss_pred CCC--CEEEE
Q ss_conf 233--26676
Q gi|254780947|r 903 PKA--NTMIV 910 (1187)
Q Consensus 903 p~a--NTiii 910 (1187)
|.. ...||
T Consensus 711 pG~~L~~vVI 720 (820)
T PRK07246 711 IQADRMIEVI 720 (820)
T ss_pred CCCCEEEEEE
T ss_conf 9987799998
No 173
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=93.37 E-value=0.23 Score=29.28 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=62.0
Q ss_pred ECCCCCCHHHHHHHH-H---HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHH
Q ss_conf 803765227999999-9---862998999929989999999999985799809985722467010048998999999999
Q gi|254780947|r 20 LSPVIDGTEGFILAE-I---ARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSC 95 (1187)
Q Consensus 20 l~Gl~gs~~allla~-l---~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~ 95 (1187)
+.|++||++.=+... + ...++.+++++|.-.-.-++.+.++.-++... ..+ +.. .--.++|..+
T Consensus 2 l~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~~~-~~~-------h~~----~l~~~~~~~~ 69 (524)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGSQV-AVL-------HSG----KLSDSEKLDA 69 (524)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCH-HHH-------CCC----CCCCHHHHHH
T ss_conf 5456788616888999999973377178970421101678999999718720-101-------001----3673456889
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHCCCCC
Q ss_conf 99984124468876999566785236998
Q gi|254780947|r 96 ISNLVSFNSSKETIIVLTTVSAVMCRSVN 124 (1187)
Q Consensus 96 L~~L~~~~~~~~~~IIVtt~~ALlqklpp 124 (1187)
..++. .++..+||-+-.|++-+++.
T Consensus 70 w~~~~----~g~~~~v~G~rsa~f~P~~~ 94 (524)
T TIGR00595 70 WRKVK----LGEALVVIGTRSALFLPLKN 94 (524)
T ss_pred HHHHH----CCCCEEEECCCHHHHCCCCC
T ss_conf 99985----18600564030343246211
No 174
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.13 E-value=0.72 Score=25.45 Aligned_cols=90 Identities=7% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCCEEEECCCCCCHHHHHHH--HHHH---C---CCC-EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCC
Q ss_conf 88608980376522799999--9986---2---998-9999299899999999999857998099857224670100489
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILA--EIAR---L---GLS-LVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla--~l~~---~---~rp-ilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp 84 (1187)
.++.+.+..-+||+|++... -+.+ . +.| .+|++|+.+-|.+.++.+..+.....+-.. .-+...+
T Consensus 35 ~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~-----~~~gg~~- 108 (203)
T cd00268 35 SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV-----VIYGGTS- 108 (203)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEE-----EEECCCC-
T ss_conf 7998899757997222888869999986166768966999968799999999999985057983899-----9838988-
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCC
Q ss_conf 9899999999999984124468876999566785236
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCR 121 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqk 121 (1187)
. .+..+. | ...+.|+|+|+.-++..
T Consensus 109 ---~-~~~~~~---l-----~~~~~IlI~TPgrl~~~ 133 (203)
T cd00268 109 ---I-DKQIRK---L-----KRGPHIVVATPGRLLDL 133 (203)
T ss_pred ---H-HHHHHH---H-----HCCCEEEEECCHHHHHH
T ss_conf ---7-999999---8-----53875999681899999
No 175
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.04 E-value=0.38 Score=27.55 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCC--CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 88874489999999876059885--414431665432489999999875112754999824366555899999
Q gi|254780947|r 624 HVETEDQEKAIDAVIQDLSSGRL--MDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~~Dmes~~P--MDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf 694 (1187)
..+.++|.+|-+..+.=-+.-+. --=|.+|++|-|||-.|-=-|=.++..|+-|.+..=.-+|. .--.||
T Consensus 72 ~~~~~~q~~al~~a~~y~enf~~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~-~lr~t~ 143 (242)
T PRK07952 72 RVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS-AMKDTF 143 (242)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHH
T ss_conf 158777899999999999865438871799789999789999999999998799499977999999-999998
No 176
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=92.99 E-value=0.3 Score=28.36 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=47.1
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 887401567787846789899848888874----4899999998760598854144316654324899999998751127
Q gi|254780947|r 599 KRAIHSVPPLMVSQDLYSQFIKRFPHVETE----DQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG 674 (1187)
Q Consensus 599 ~R~~~~g~~f~~d~~~~~eFe~~FpyeET~----DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g 674 (1187)
+|-...|++... ..+ +|.|.+.| .|+..+.. .+.++ +..+=+++|.+|-|||-.|.=-+-.|+..|
T Consensus 6 r~~k~A~~~~~~---tle----~~d~~~~~~~~~~~i~~L~~-~~~i~--~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g 75 (178)
T pfam01695 6 TRLRQAKLPARK---TLE----DFDFRAARGLDRRLIAELAG-LDWIE--QAENLLLLGPPGVGKTHLACALGHQACRAG 75 (178)
T ss_pred HHHHHCCCCCCC---CHH----HCCCCCCCCCCHHHHHHHHC-CCCHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999967988999---863----36887899989999998855-97421--587689989999878999999999999869
Q ss_pred CEEEEEECHHHHH
Q ss_conf 5499982436655
Q gi|254780947|r 675 LQVAVIAPTTLLV 687 (1187)
Q Consensus 675 kQvavlvPTTiLa 687 (1187)
+.|.+..=+.++.
T Consensus 76 ~~v~f~~~~~L~~ 88 (178)
T pfam01695 76 YSVLFTRTPDLVE 88 (178)
T ss_pred CEEEEEECHHHHH
T ss_conf 8599996167999
No 177
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.99 E-value=0.35 Score=27.88 Aligned_cols=620 Identities=14% Similarity=0.133 Sum_probs=270.5
Q ss_pred EECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCC
Q ss_conf 92998999999999998579980998572246701004899899999999999984124468876999566785236998
Q gi|254780947|r 45 ICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVN 124 (1187)
Q Consensus 45 I~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp 124 (1187)
.....+-..-+...|..+.|+ .|+.--.||-| ...-++-|..|+..+-.. ..+++.....-- -
T Consensus 102 TGEGKTL~atlp~ylnaL~gk-gVhvVTvNdYL--------A~RDae~m~~l~~~LGLs----vG~~~~~m~~~e----k 164 (822)
T COG0653 102 TGEGKTLVATLPAYLNALAGK-GVHVVTVNDYL--------ARRDAEWMGPLYEFLGLS----VGVILAGMSPEE----K 164 (822)
T ss_pred CCCCHHHHHHHHHHHHHCCCC-CCEEEEEHHHH--------HHHCHHHHHHHHHHCCCC----EEECCCCCCHHH----H
T ss_conf 377359998899999723899-74895004877--------442899989999876882----322358898678----6
Q ss_pred HHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCEEEEEEEEECCC
Q ss_conf 66885154899409741999999999982884554521783165457475730698887268863487221015451374
Q gi|254780947|r 125 IMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSST 204 (1187)
Q Consensus 125 ~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~T 204 (1187)
+..+ ..-++-..+.++.+|-|...++ |...+.|..+--|||.-.+-+|----+..|.=|.- ..-++.-.+...+
T Consensus 165 ~~aY-~~DItY~TnnElGFDYLRDNm~---~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG--~~~~~~~~Y~~~~ 238 (822)
T COG0653 165 RAAY-ACDITYGTNNELGFDYLRDNMV---TSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG--PAEDSSELYKKVD 238 (822)
T ss_pred HHHH-HCCCEECCCCCCCCCHHHHHHH---CCHHHHHHCCCCEEEECCHHHEEEECCCCCEEEEC--CCCCCCHHHHHHH
T ss_conf 8887-3375430550017552221432---05877550368838875514400000366523216--6656725999999
Q ss_pred C--CCCCCCCEEEEEC-CCCEECCHHHHHHHHHHHHHHCCCCHH----HCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 8--5312221699943-773217999999999999974173700----15777899778987887776777614876767
Q gi|254780947|r 205 Q--RTIREISIFEINT-LSEVMLTSQNISRFRENYLANFGTTTQ----EDPLYVAISQGRRYPGMEHWLPFFYQSMETIF 277 (1187)
Q Consensus 205 Q--RSi~~i~~i~I~P-a~E~il~~e~i~~fr~~~r~~f~~~~~----~~~i~e~Is~g~~~~GiE~yLPlFye~~~tLf 277 (1187)
+ +++...+.++|-+ .+.+.+++..++++.+-+.-.---... -..+.+.+... -+|+.. -
T Consensus 239 ~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~----------~l~~~D----~ 304 (822)
T COG0653 239 DLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAH----------ILFFRD----V 304 (822)
T ss_pred HHHHHHCCCCCEEECCHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH----------HHHHCC----C
T ss_conf 99987434545365313220331434299999984841014536677775689999878----------876328----7
Q ss_pred CCC-CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 334-6761334653589999889999999899999865222026556785021169989999975114608962675322
Q gi|254780947|r 278 PYL-SEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356 (1187)
Q Consensus 278 DYL-p~~~iii~~~~~e~~~~~~~~i~d~~e~~~~~~~~~~~~~~~~pl~Pe~Lyl~~~el~~ll~~~~~ii~l~~~~~~ 356 (1187)
||+ .++.+++.+...-..-. ..-+.+....-.++.+ .-.+.++...+..-.|..++.-+.++..++.-...
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~-gRr~s~GLhQAiEAKE-------gv~i~~e~~tlatITfQn~fR~y~kl~gMTGTA~t 376 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMME-GRRWSDGLHQAIEAKE-------GVEIQEENQTLATITFQNLFRLYPKLAGMTGTADT 376 (822)
T ss_pred EEEEECCEEEEEECCCCCCCC-CCCCCCHHHHHHHHHC-------CCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 169856908998456687666-8688816689999844-------88533363664468599999876887467776056
Q ss_pred CCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 2246-733776414665668200100112222000185899999999998679829999589458999998677648873
Q gi|254780947|r 357 ETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 357 ~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
+... .....+...+.+...|.........--.....++...+++|......|.+|++-+.|-...|-+..+|...||+.
T Consensus 377 e~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 377 EEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCC
T ss_conf 78888987477126623788656778122003527988999999999999659988976731422526778998649974
Q ss_pred C-CCCCCHH-H--H--HCCCCCCEEEEECCCCCC----------CC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3-2345224-5--5--204668479998104468----------74--66568871200137311122122222221101
Q gi|254780947|r 436 I-KKINTLT-E--I--NSLLKEEIAAVILPINQG----------FE--TKHMILVTETDLLGKKIARRVVRKKNVHAQSF 497 (1187)
Q Consensus 436 ~-~~~~~~~-~--~--~~~~~~~i~i~~~~L~~G----------F~--~~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i 497 (1187)
. .+..+.. + + .+-.+|.+.+...=..+| |. .-.+.||+...-=.++.-.+-+.| .+
T Consensus 457 ~VLNAk~h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGR---sG--- 530 (822)
T COG0653 457 NVLNAKNHAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGR---AG--- 530 (822)
T ss_pred EEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHCC---CC---
T ss_conf 044043679999987612788866316532467752036897789997078568732542156777775045---55---
Q ss_pred CCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEE------ECCCCEEEEEHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf 22444032351120355423311231014566666359999------8699879966675211110036-7888532343
Q gi|254780947|r 498 FDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELH------YADNAKLFVPVENIDLISRYST-EITTVTLDKL 570 (1187)
Q Consensus 498 ~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~Ie------Ya~~DkLYVPv~~l~lIskYg~-~~~~p~L~kL 570 (1187)
.-||+ |.++.|+.++ |++ |++.=+ +++++- +++ |--+++
T Consensus 531 ------RQGDp--------------------G~S~F~lSleD~L~r~F~~-d~~~~~------~~~l~~~~~e-~i~~~~ 576 (822)
T COG0653 531 ------RQGDP--------------------GSSRFYLSLEDDLMRRFAS-DRLPAL------MDKLGLKEGE-AIESKM 576 (822)
T ss_pred ------CCCCC--------------------CHHHHHHHHHHHHHHHHCC-HHHHHH------HHHHCCCCCC-CCCCHH
T ss_conf ------68996--------------------4331023238999987372-456778------7764486567-565188
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-CCCCCCCC-HHHHHHHHHH----CCCCCCHHHHHH
Q ss_conf 4034899999999999999999999-----------99988740-15677878-4678989984----888887448999
Q gi|254780947|r 571 GGSAWKTRKANLKKRLEDLAQKLVD-----------IAAKRAIH-SVPPLMVS-QDLYSQFIKR----FPHVETEDQEKA 633 (1187)
Q Consensus 571 Gg~~W~k~K~Kakk~v~diA~eLl~-----------lyA~R~~~-~g~~f~~d-~~~~~eFe~~----FpyeET~DQ~~A 633 (1187)
=+..-+++-+|+..+=-|+-..|++ +|++|... .+..++.. ..+-.+|-+. ++-..-.-..--
T Consensus 577 ~~~~ie~aQk~vE~~n~d~rk~ll~yddv~~~QR~~IY~~R~~~l~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d 656 (822)
T COG0653 577 VTRAVERAQRKVEGRNFDIRKQLLEYDDVLNDQRKVIYAQRNRLLEALDLSEFISKMIEDVIKALVGEYIPPPQQAELWD 656 (822)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999988999970588187667777578899899999988877766667899999999999998503578500221321
Q ss_pred HHHHHHHCCCCCCCCEEEE-CCCCCC-HHHHH--HHHHHHHHCCCCEEEEEECHHHHH----------HHHHHHHHHHHC
Q ss_conf 9999876059885414431-665432-48999--999987511275499982436655----------589999998606
Q gi|254780947|r 634 IDAVIQDLSSGRLMDRLIC-GDVGFG-KTEIA--LRAAFIAVMNGLQVAVIAPTTLLV----------RQHFRLFSERFQ 699 (1187)
Q Consensus 634 I~eV~~Dmes~~PMDRLiC-GDVGfG-KTEVA--~RAafkav~~gkQvavlvPTTiLa----------~QH~~tf~~Rf~ 699 (1187)
++.+++-+...-.+|+-+- =|+--+ +.|++ +-.+..+..++|.- +.|..... .+||.--..++.
T Consensus 657 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~e~i~~~~~~~~~~k~~--~~~~~~~~~~r~v~l~~iD~~W~ehl~~md 734 (822)
T COG0653 657 LEGLIDELKGTVHPDLPINKSDLEDEAEEELAERILKAADEAYDKKEE--VGPEAMREFERYVMLQVLDYLWREHLDAMD 734 (822)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999986532754105777652254899999999999999875412--389999999999999988677898899999
Q ss_pred CCCCCEEEECCCCCCHH---HHHHHHHHCCCCCEEEEECHHHHCC-CCCCCCCCEEEEECHHH
Q ss_conf 78983354106663025---6777753122576089852065427-85202365699722233
Q gi|254780947|r 700 GFSVRIASISRFVQTKE---AALHKKSITEGQVDIVIGTHALLNP-KITFANLGLIIIDEEQH 758 (1187)
Q Consensus 700 ~~pv~i~~lsRf~~~~e---~~~i~~~l~~G~idiviGTH~ll~~-~v~f~~LgLliiDEEqr 758 (1187)
..+-.|..=+=-++... +++-.+...+.--+|-.-||+-|.+ .|.. .++|++
T Consensus 735 ~Lr~~I~lR~y~qk~Pl~eyk~e~~~~Fe~m~~~i~~~~~~~l~~~~~~~-------~~~~~~ 790 (822)
T COG0653 735 ALREGIHLRGYAQKDPLIEYKREAFELFEDMLEDIKEDVVKRLFKVQVAE-------VEEEDR 790 (822)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCHH
T ss_conf 99998546766168808899999999999999888999999997145343-------331125
No 178
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=92.98 E-value=0.54 Score=26.43 Aligned_cols=194 Identities=19% Similarity=0.245 Sum_probs=85.0
Q ss_pred CHHHHCCCCCC--CCCCEEEEECH-------HHHH------HHHHHHHHHCCCCCCEEE---------------EECCCC
Q ss_conf 20654278520--23656997222-------3300------888998863167884899---------------953534
Q gi|254780947|r 735 THALLNPKITF--ANLGLIIIDEE-------QHFG------VKHKEALKETHTGVHVLT---------------LSATPI 784 (1187)
Q Consensus 735 TH~ll~~~v~f--~~LgLliiDEE-------qrFG------V~~Ke~lk~~~~~vdvLt---------------lsATPI 784 (1187)
.|.|+.+|+.+ +|=-.+||||- .||. |..||..+--..+--.=| ||-|-
T Consensus 435 A~~lf~kd~dYiV~d~~VvIVDEfTGR~m~gRr~sdGLHQAIEAKEgV~I~~e~qTlAsIT~QnfFR~Y~kLsGMTGTA- 513 (969)
T PRK12899 435 AHLLMERDVDYIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTA- 513 (969)
T ss_pred HHHHHHCCCEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHCCCCCCC-
T ss_conf 9998835980899789089985677765889845521889999873898676761365536999983050430686574-
Q ss_pred CHHHHHHHHCCCCCCEEECCCCC---C--CCEEEEEEECC--HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 08899997122254122015788---7--75379998579--78989999989871885999826446928899999861
Q gi|254780947|r 785 PRTLQLAITGVRELSLISMPPIN---R--IACRTSISIFD--PLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857 (1187)
Q Consensus 785 PRTL~msl~g~rd~S~i~tpP~~---R--~~v~T~v~~~~--~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l 857 (1187)
.|=---+.-|=.|.|+.-|+-. | +|-.-|.++.. .++|.+. ..=..+|--|-.--.-|+.-+.....|++.
T Consensus 514 -~tea~Ef~~IY~L~Vv~IPTNrP~~R~D~~D~vy~T~~~K~~Avi~eI-~~~h~~GqPVLVGT~SVe~SE~lS~~L~~~ 591 (969)
T PRK12899 514 -ITESREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVNEI-ASIHRSGNPILIGTESVEVSEKLSRILRQN 591 (969)
T ss_pred -HHHHHHHHHHHCCCEEEECCCCCCEEECCCCEEECCHHHHHHHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf -768999999868835996799982123288838528999999999999-999957998899838579999999999986
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHH--------------H
Q ss_conf 65464888613467478999999996388757976102003633223326676250235886045--------------5
Q gi|254780947|r 858 VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY--------------Q 923 (1187)
Q Consensus 858 ~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqly--------------Q 923 (1187)
.....|.+.+ -++-|.-+..=.-..--|-|+|+.=--|-||-=- .+---|.-|| |
T Consensus 592 --gI~H~VLNAK--~h~~EAeIIA~AG~~GaVTIATNMAGRGTDIkL~-------~~V~~lGGLhVIGTERHESRRIDnQ 660 (969)
T PRK12899 592 --RIEHTVLNAK--NHAQEAEIIAGAGKLGAVTVATNMAGRGTDIKLD-------EEAVAVGGLHVIGTSRHQSRRIDRQ 660 (969)
T ss_pred --CCCHHHCCCH--HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC-------CCHHHCCCEEEEECCCCHHHHHHHH
T ss_conf --9964541511--1789999999559999779713267898583138-------1334338727852143401457767
Q ss_pred HHHHCCCCCCCCEEEEEEC
Q ss_conf 3221035676736999966
Q gi|254780947|r 924 LRGRVGRSKIASFALFLLP 942 (1187)
Q Consensus 924 lrGRVGRs~~~ayayl~~~ 942 (1187)
||||-||-+--+..=|++.
T Consensus 661 LRGRaGRQGDPGsS~F~lS 679 (969)
T PRK12899 661 LRGRCARLGDPGAAKFFLS 679 (969)
T ss_pred HHCCCCCCCCCCCCEEEEE
T ss_conf 6033134789985326765
No 179
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.95 E-value=0.12 Score=31.48 Aligned_cols=208 Identities=18% Similarity=0.159 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99999999887401567787846789899848888874489999999876059885414431665432489999999875
Q gi|254780947|r 591 QKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIA 670 (1187)
Q Consensus 591 ~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafka 670 (1187)
.++++.|=.=-...+.+|+.+-. .|-|-.+.|-..|+..+..+..-++-- =.|||+||-|||= .-| |-.+
T Consensus 4 ~~~~e~~l~~~g~~~~pf~~~~~-------~~~~~~~a~h~e~l~~l~~~i~d~qg~-~~vtGevGsGKTv-~~R-al~~ 73 (269)
T COG3267 4 THLLEMLLNHFGFSRLPFSWDIQ-------PGLDYWAADHNEALLMLHAAIADGQGI-LAVTGEVGSGKTV-LRR-ALLA 73 (269)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCHHH-HHH-HHHH
T ss_conf 67899999886324488755403-------666643200159999977777517855-9997447776369-999-9998
Q ss_pred HCCCCEEEE-EECHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCC--HHHHHHHHHHCCCCCEEEEECHHHHCCCCCCC
Q ss_conf 112754999-8243665558999999860-6789833541066630--25677775312257608985206542785202
Q gi|254780947|r 671 VMNGLQVAV-IAPTTLLVRQHFRLFSERF-QGFSVRIASISRFVQT--KEAALHKKSITEGQVDIVIGTHALLNPKITFA 746 (1187)
Q Consensus 671 v~~gkQvav-lvPTTiLa~QH~~tf~~Rf-~~~pv~i~~lsRf~~~--~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~ 746 (1187)
-.++.|+++ ..|-+-++.+ |+.++. +.+-. ...+...+. +..+...+-.+.|+=- |
T Consensus 74 s~~~d~~~~v~i~~~~~s~~---~~~~ai~~~l~~--~p~~~~~~~~e~~~~~L~al~~~g~r~------------v--- 133 (269)
T COG3267 74 SLNEDQVAVVVIDKPTLSDA---TLLEAIVADLES--QPKVNVNAVLEQIDRELAALVKKGKRP------------V--- 133 (269)
T ss_pred HCCCCCEEEEEECCCCHHHH---HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHCCCC------------E---
T ss_conf 55788517998357630178---899999998405--832006889999999999999817887------------3---
Q ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCCC----E--EEEEC----CCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEE
Q ss_conf 36569972223300888998863167884----8--99953----53408899997122254122015788775379998
Q gi|254780947|r 747 NLGLIIIDEEQHFGVKHKEALKETHTGVH----V--LTLSA----TPIPRTLQLAITGVRELSLISMPPINRIACRTSIS 816 (1187)
Q Consensus 747 ~LgLliiDEEqrFGV~~Ke~lk~~~~~vd----v--LtlsA----TPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~ 816 (1187)
.++|||-|--+-..=|.+|-+-.-++ - .-|-+ -|=||-.+|+=.+= |.-|+--+.
T Consensus 134 ---~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~------------R~~ir~~l~ 198 (269)
T COG3267 134 ---VLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ------------RIDIRIELP 198 (269)
T ss_pred ---EEEEHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCHHHHHHHHH------------EEEEEEECC
T ss_conf ---78501676617548999999886203466721145507801143544288985431------------677899538
Q ss_pred ECCHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 579789899999898718859998264
Q gi|254780947|r 817 IFDPLVVRETLMREYYRGGQSFYVCPR 843 (1187)
Q Consensus 817 ~~~~~~i~~ai~rEl~RgGQvf~v~nr 843 (1187)
++++..+..=|+.-|.++|+-.=+.|+
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~ 225 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSD 225 (269)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 867478999999998505899666770
No 180
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.93 E-value=0.45 Score=27.04 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=48.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHH----HHHCCCCEEEECCCCCCCCHHCCCCCH
Q ss_conf 8608980376522799999998----62998999929989999999999----985799809985722467010048998
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKIL----TLVVPDIRVIIFPAWDCLPYDRVSPSP 86 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL----~~f~~~~~V~~FP~~E~LPYd~~sp~~ 86 (1187)
+.-+.+.|-+|++|+.++.+++ +.+..+++|+-..-.++++.+-. ...+ .++.++.+. +.
T Consensus 23 G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~~~~er~~qi~~~~~~~~~--~~i~~~~~~----------~~ 90 (224)
T PRK09361 23 GTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEGLSPERFKQIAGEDFEELL--SNIIIFEPS----------SF 90 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCHHHHH--HCCEEECCC----------CH
T ss_conf 879999899998599999999999997499099967876788999998565734542--061472479----------88
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHC
Q ss_conf 9999999999998412446887699956678523
Q gi|254780947|r 87 YVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120 (1187)
Q Consensus 87 di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlq 120 (1187)
+-..+-+..+..+. ..+...|||-|+.++..
T Consensus 91 ~~~~~~i~~~~~~~---~~~~~lvVIDSi~~~~~ 121 (224)
T PRK09361 91 EEQREAIQKAEKIA---KENVGLIVLDSATSLYR 121 (224)
T ss_pred HHHHHHHHHHHHHH---HCCCCEEEEECCHHHEE
T ss_conf 99999999999875---05873899962301000
No 181
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=92.54 E-value=0.095 Score=32.20 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=70.6
Q ss_pred CCCCCCHH--HHCCCCCEEECCCCCEEEECCCCCC-CCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 11012244--4032351120355423311231014-56666635999986998799666752111100367888532343
Q gi|254780947|r 494 AQSFFDSS--NIEEGAIIVHAEHGIGRFVRLYSIE-VSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKL 570 (1187)
Q Consensus 494 ~~~i~dl~--eL~~GDyVVH~dHGIGrY~GLe~l~-v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kL 570 (1187)
...+.|.+ +|...|. |-|+...- .-++.-|.=.++=--|.---=|.=.+..+.--++++ .-.=+.=
T Consensus 709 ~~~~~D~~GGDlrtDD~----------~~g~~~~~~~~~v~pd~~e~~~~~~~~~~~p~~~~y~~~~~~~~~-~~~~~~~ 777 (975)
T TIGR02621 709 CRIWDDLGGGDLRTDDP----------QSGMREERALIDVKPDAEELEEEAGADTVKPLLRWYLVEAATEDT-DGSKDSA 777 (975)
T ss_pred EEEEECCCCCCCCCCCC----------HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCC-CCCCCCC
T ss_conf 67851588974425664----------233899998716998737898851550105415666402023788-7543210
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCHH-HHHHH-----HHHCCCCCCHHHH
Q ss_conf 40348999999999999999999----99999887401567787846-78989-----9848888874489
Q gi|254780947|r 571 GGSAWKTRKANLKKRLEDLAQKL----VDIAAKRAIHSVPPLMVSQD-LYSQF-----IKRFPHVETEDQE 631 (1187)
Q Consensus 571 Gg~~W~k~K~Kakk~v~diA~eL----l~lyA~R~~~~g~~f~~d~~-~~~eF-----e~~FpyeET~DQ~ 631 (1187)
+-..|+.=-.+|.+.++.++..| +...|-+.+++-|=...+.. ||.-+ |+.|-.-|-|-|-
T Consensus 778 ~~~~L~~H~d~v~~~A~~~~~~lGLg~l~~~a~~~AAr~HD~GK~d~~~Q~~LGa~~DesGfllleePrqr 848 (975)
T TIGR02621 778 DEVALSDHLDNVVEVAKKLVEKLGLGELLVEAVVLAARLHDLGKADPRFQTALGARSDESGFLLLEEPRQR 848 (975)
T ss_pred CHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 00103320004899999999871886346899999764067666666888863032334541320376411
No 182
>PRK00254 ski2-like helicase; Provisional
Probab=92.45 E-value=0.45 Score=26.99 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCCEEEECCCCCCHHHHHHH-----HHHHCCCCEEEEECCHHHHHHHHHHHHHHCC-CCEEEEC
Q ss_conf 88608980376522799999-----9986299899992998999999999998579-9809985
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILA-----EIARLGLSLVYICSDERILINLKKILTLVVP-DIRVIIF 71 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla-----~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~-~~~V~~F 71 (1187)
.++++.++--++|+|++++- .+.+.++..++++|-..-|.+-+.+++.|.+ ...|..+
T Consensus 38 ~g~NllvsaPT~sGKTlvAElail~~~l~~~~k~iyi~P~kALa~EK~~~f~~~~~~g~~V~~~ 101 (717)
T PRK00254 38 EGKNLLIAIPTASGKTLIAEIAMVNKLLREGGKAVYLVPLKALAEEKFREFKDWEVLGLRVAMA 101 (717)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6981899899887489999999999998529929999267999999999998777449889897
No 183
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.34 E-value=0.9 Score=24.70 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHH----HHCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 888744899999998----76059885414-4316654324899999998751127549998243665558999999860
Q gi|254780947|r 624 HVETEDQEKAIDAVI----QDLSSGRLMDR-LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERF 698 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~----~Dmes~~PMDR-LiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf 698 (1187)
|+|=-.|...+...+ +......+++- |.||==|.|||=.|-=-| ++..... .++-.|
T Consensus 23 l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiA-k~~~~~~-~~~s~~---------------- 84 (234)
T pfam05496 23 LDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIA-NEMGVNI-RITSGP---------------- 84 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HHHCCCE-EEECCH----------------
T ss_conf 6660694999999999999887427776627887899998889999999-8408753-761426----------------
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH-HCCC-CCCE
Q ss_conf 6789833541066630256777753122576089852065427852023656997222330088899886-3167-8848
Q gi|254780947|r 699 QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALK-ETHT-GVHV 776 (1187)
Q Consensus 699 ~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk-~~~~-~vdv 776 (1187)
. ...+++...++..++.++ +|.|||=|||.=.|-|.|= .+-. .+|+
T Consensus 85 --------~---i~~~~di~~~l~~~~~~~---------------------ILFIDEIHr~nK~qqd~Llp~vE~g~i~i 132 (234)
T pfam05496 85 --------A---LEKPGDLAAILTNLEPGD---------------------VLFIDEIHRLNRAVEEILYPAMEDFRLDI 132 (234)
T ss_pred --------H---HHHHHHHHHHHHHCCCCC---------------------EEEEECHHHCCHHHHHHCCCCCCCCEEEE
T ss_conf --------6---643899999998458998---------------------89996654358768874455334616999
Q ss_pred EEEE-------CCCCCHHHHHHHHCCC-CCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 9995-------3534088999971222-541220157887753799985797898999998987
Q gi|254780947|r 777 LTLS-------ATPIPRTLQLAITGVR-ELSLISMPPINRIACRTSISIFDPLVVRETLMREYY 832 (1187)
Q Consensus 777 Ltls-------ATPIPRTL~msl~g~r-d~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~ 832 (1187)
+.=. -.+.|. ..|.|.- +.-.+..|=..|..+.-...+++.+-|..-+.|-..
T Consensus 133 ~ig~~~~A~~~~~e~P~---FtLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~ 193 (234)
T pfam05496 133 VIGKGPSARSIRLDLPP---FTLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSAR 193 (234)
T ss_pred EECCCCCCEEEECCCCC---EEEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
T ss_conf 96367663246526897---59985215666477779976211244246899999999999999
No 184
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.16 E-value=0.19 Score=29.96 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=63.6
Q ss_pred EEECCCCCCHHHHHHHHH----HHCCCCEEEEECCHHHHHHHHHHHHHHCCC-------C--EEEECCCCCCCCHHCCCC
Q ss_conf 898037652279999999----862998999929989999999999985799-------8--099857224670100489
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEI----ARLGLSLVYICSDERILINLKKILTLVVPD-------I--RVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l----~~~~rpilvI~~d~~~A~~l~~dL~~f~~~-------~--~V~~FP~~E~LPYd~~sp 84 (1187)
..+.|-+|++|+.++.++ ++.+.++++|+-. ....++.+..+.|.-+ . .+..+...+..++...
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~e-E~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~-- 78 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS-- 78 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHH--
T ss_conf 15876899999999999999998769978999950-799999999998399858986458568996262002203332--
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCC
Q ss_conf 9899999999999984124468876999566785236998668851548994097419999999999828845545217
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYK 163 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~ 163 (1187)
..+.. .+.+...+. ..+...|||=|+.++....+. . ....+-.+...|..+|-+-.=+++.
T Consensus 79 ~~~~l---~~~i~~~i~--~~~~~~vVIDSi~~l~~~~~~--~-----------~~~~~~~l~~~l~~~~~t~ll~~e~ 139 (187)
T cd01124 79 LRLEL---IQRLKDAIE--EFKAKRVVIDSVSGLLLMEQS--T-----------ARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred HHHHH---HHHHHHHHH--HHCCCEEEECCHHHHHHCCHH--H-----------HHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 36789---999999999--849989999486887525666--6-----------8999999999999769968999974
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.16 E-value=0.94 Score=24.54 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHCCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 78467898998488888744899999998---760598854144-31665432489999999875112754999824366
Q gi|254780947|r 610 VSQDLYSQFIKRFPHVETEDQEKAIDAVI---QDLSSGRLMDRL-ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTL 685 (1187)
Q Consensus 610 ~d~~~~~eFe~~FpyeET~DQ~~AI~eV~---~Dmes~~PMDRL-iCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTi 685 (1187)
|..-+...|++- +...++-..|+.++. .+...+...-=| +||++|-|||=.|--.|=..+..|+-|.++.=.++
T Consensus 119 pk~i~~as~~d~--~~~d~~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~ 196 (306)
T PRK08939 119 PKDLLQATLADI--DLDDLDRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEF 196 (306)
T ss_pred CHHHHCCCHHHC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf 799980989864--889778999999999999973769888778898999998999999999999986992999875999
Q ss_pred HH
Q ss_conf 55
Q gi|254780947|r 686 LV 687 (1187)
Q Consensus 686 La 687 (1187)
++
T Consensus 197 ~~ 198 (306)
T PRK08939 197 IR 198 (306)
T ss_pred HH
T ss_conf 99
No 186
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.88 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCC
Q ss_conf 489940974199999999998288455452178316545747573069888
Q gi|254780947|r 132 KLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKK 182 (1187)
Q Consensus 132 ~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~ 182 (1187)
.+.+.+...+|++.|.. | .|| .-....| .|++|-|+..+
T Consensus 96 ~~vV~i~~~vd~~~L~p-----G-~rV--al~~~s~----~Iv~vLp~~~D 134 (406)
T COG1222 96 KFVVNILSFVDRDLLEP-----G-MRV--ALNRDSY----SIVRVLPPEVD 134 (406)
T ss_pred EEEEECCCCCCHHHCCC-----C-CEE--EECCCCC----EEEEECCCCCC
T ss_conf 18873468769878699-----8-889--9857761----45661787557
No 187
>KOG0386 consensus
Probab=91.88 E-value=0.38 Score=27.58 Aligned_cols=129 Identities=24% Similarity=0.376 Sum_probs=89.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEE----EEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 316654324899999998751127549----9982436655589999998606789833541066630256777753122
Q gi|254780947|r 651 ICGDVGFGKTEIALRAAFIAVMNGLQV----AVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE 726 (1187)
Q Consensus 651 iCGDVGfGKTEVA~RAafkav~~gkQv----avlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~ 726 (1187)
+.-.-|-|||==-| +--.--|..||+ -|+||+-+|. +...-|.-|.-.|...+-=.|+.+.+...+.+..
T Consensus 418 LADEMGLGKTIQtI-sLitYLmE~K~~~GP~LvivPlstL~-----NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~ 491 (1157)
T KOG0386 418 LADEMGLGKTIQTI-SLITYLMEHKQMQGPFLIIVPLSTLV-----NWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRH 491 (1157)
T ss_pred CCHHCCCCHHHHHH-HHHHHHHHHCCCCCCEEEECCCCCCC-----CCHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf 20010441488999-99999999705679838954354567-----7122024346651356541788888667898860
Q ss_pred CCCEEEEECH-------HHHCCCCCCCCCCEEEEECHHHHHHHHH---HHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 5760898520-------6542785202365699722233008889---9886316788489995353408899
Q gi|254780947|r 727 GQVDIVIGTH-------ALLNPKITFANLGLIIIDEEQHFGVKHK---EALKETHTGVHVLTLSATPIPRTLQ 789 (1187)
Q Consensus 727 G~idiviGTH-------~ll~~~v~f~~LgLliiDEEqrFGV~~K---e~lk~~~~~vdvLtlsATPIPRTL~ 789 (1187)
|+.+|++-|- .||| .|.|+ -+||||-||--=.|- ..|..-...=.=|-||-||+---|.
T Consensus 492 gKFnVLlTtyEyiikdk~lLs-KI~W~---yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~Lp 560 (1157)
T KOG0386 492 GKFNVLLTTYEYIIKDKALLS-KISWK---YMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLP 560 (1157)
T ss_pred CCCEEEEEEHHHHCCCHHHHH-CCCCC---CEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCH
T ss_conf 011034200877537999984-46986---3563222224512557887750255212156532883222117
No 188
>KOG1205 consensus
Probab=91.46 E-value=1.1 Score=24.00 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=92.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHH
Q ss_conf 88608980376522799999998629989999299899999999999857998099857224670100489989999999
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRL 93 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl 93 (1187)
.++-+.++|.+.+--.-++-++++.+..+++++...++.+++.++++-..+..+|+..|. | ++-..++..-.-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~------D-vs~~~~~~~~~~ 83 (282)
T KOG1205 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQL------D-VSDEESVKKFVE 83 (282)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEC------C-CCCHHHHHHHHH
T ss_conf 898899957871788999999986777347742432028999999997478676479967------6-588788999999
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHH--HCCCEECCCCCCCCEEEE-E
Q ss_conf 9999984124468876999566785236998668851548994097419999999999--828845545217831654-5
Q gi|254780947|r 94 SCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLE--TNGFQRVNAVYKVGEYAV-R 170 (1187)
Q Consensus 94 ~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv--~~GY~Rv~~Ve~~GEFAv-R 170 (1187)
.+...+ +.-.|+|-.+. +.+ .-+ + +..+.+.+.+-+. -+|.......--|.--.. +
T Consensus 84 ~~~~~f------g~vDvLVNNAG-~~~-~~~----------~---~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~ 142 (282)
T KOG1205 84 WAIRHF------GRVDVLVNNAG-ISL-VGF----------L---EDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRND 142 (282)
T ss_pred HHHHHC------CCCCEEEECCC-CCC-CCC----------C---CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_conf 999865------88888984686-565-553----------3---44768988877100040248999999887663289
Q ss_pred CCEEEEECCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCC
Q ss_conf 747573069888726886348722101545137485312221699943773217999999999999974173
Q gi|254780947|r 171 GGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGT 242 (1187)
Q Consensus 171 GgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQRSi~~i~~i~I~Pa~E~il~~e~i~~fr~~~r~~f~~ 242 (1187)
|-|+=|-+..-..|+- .++ +++| ++-++..|-+-+|.++..
T Consensus 143 GhIVvisSiaG~~~~P------------------~~~--------~Y~A-----SK~Al~~f~etLR~El~~ 183 (282)
T KOG1205 143 GHIVVISSIAGKMPLP------------------FRS--------IYSA-----SKHALEGFFETLRQELIP 183 (282)
T ss_pred CEEEEEECCCCCCCCC------------------CCC--------CCCH-----HHHHHHHHHHHHHHHHHC
T ss_conf 7499980610155788------------------655--------4156-----799999999999999640
No 189
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=91.43 E-value=0.24 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 899999867764887332345224552
Q gi|254780947|r 420 ALQHLIHLIESHGFKKIKKINTLTEIN 446 (1187)
Q Consensus 420 ~~eRL~elL~e~gI~~~~~~~~~~~~~ 446 (1187)
|..-|..+-+.++++.+...+-+.+++
T Consensus 137 Ql~~Ll~lArk~~~AVviTNQvy~d~~ 163 (223)
T TIGR02237 137 QLTLLLSLARKKDLAVVITNQVYTDVN 163 (223)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEEC
T ss_conf 999999998764997899711588637
No 190
>PRK06526 transposase; Provisional
Probab=91.08 E-value=0.63 Score=25.90 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=34.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 8541443166543248999999987511275499982436655
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
+.-+=+++|..|-|||-+|.==+.+|+..|+-|.+.-=+.++.
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~ 139 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 5887899899998689999999999998699679987799999
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=90.95 E-value=1.2 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 973577887651488608980376522799
Q gi|254780947|r 1 MIFGSDIERISEKYCKKITLSPVIDGTEGF 30 (1187)
Q Consensus 1 ~~f~~~~~~~~~k~~~~i~l~Gl~gs~~al 30 (1187)
|.|.+.+..+.. ..-++..---++-.++.
T Consensus 1 msf~~dL~~lIr-Ar~PlI~I~T~EE~R~~ 29 (491)
T CHL00195 1 MKFTDELKLLLK-ARYPIIYINTIEEERVE 29 (491)
T ss_pred CCHHHHHHHHHH-CCCCEEEEECCCHHHHH
T ss_conf 986999999998-49998999168899999
No 192
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.87 E-value=0.33 Score=28.03 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=77.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCHHHHHHHHHHHHHHCCC-------CEEEECCCCCCCCHHCCC
Q ss_conf 860898037652279999999----862998999929989999999999985799-------809985722467010048
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEI----ARLGLSLVYICSDERILINLKKILTLVVPD-------IRVIIFPAWDCLPYDRVS 83 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l----~~~~rpilvI~~d~~~A~~l~~dL~~f~~~-------~~V~~FP~~E~LPYd~~s 83 (1187)
+..+.+.|-+|++|+.+..++ .+.+.+.++|+-.+.. .++....+.|.-+ .....+|-. -+...
T Consensus 32 g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~-~~~~~~~~~~g~dl~~~~~~G~L~i~~~~----~~~~~ 106 (241)
T PRK06067 32 GSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTS-KSYLKQMESLKLDISDFFIWGYLRIFPLN----TEGFE 106 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCH-HHHHHHHHHCCCCHHHHHHCCCCEEEECC----CCCCC
T ss_conf 90899980799887999999999998679829999942899-99999999839985999866970578324----11134
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCC
Q ss_conf 99899999999999984124468876999566785236998668851548994097419999999999828845545217
Q gi|254780947|r 84 PSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYK 163 (1187)
Q Consensus 84 p~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~ 163 (1187)
+..+....=+..+.+... ..+...|||-|+.++..... .+.+. ++=..+..|...|-+- -...+
T Consensus 107 ~~~~~~~~ll~~l~~~v~--~~~~~~vVIDSls~l~~~~~-~~~~~------------~~l~~l~~l~~~g~tv-llt~~ 170 (241)
T PRK06067 107 WNSELAEKLLDLIIEFIK--RRREEVIIIDSLTIFATYAS-EDDVL------------NFFTECKNLCDNGKTI-LITLH 170 (241)
T ss_pred CCHHHHHHHHHHHHHHHH--HHCCCEEEECCHHHHHCCCC-HHHHH------------HHHHHHHHHHHCCCEE-EEEEC
T ss_conf 215568999999999999--71998999928017541388-89999------------9999999999689889-99905
Q ss_pred CCEEEEECCEEEEECCCCCCCEEEECCCCEEEEEEEEECCCC
Q ss_conf 831654574757306988872688634872210154513748
Q gi|254780947|r 164 VGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQ 205 (1187)
Q Consensus 164 ~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQ 205 (1187)
++. ...+...+++..-|.|=.+|.......
T Consensus 171 ~~~------------~~~~~~~~i~~vaD~vI~Lr~~~~~g~ 200 (241)
T PRK06067 171 PYA------------FSEDTLVRIRSICDVHLKLRKEQVGDR 200 (241)
T ss_pred CCC------------CCCCCCCCEEEEEEEEEEEEEEEECCE
T ss_conf 676------------476643124899899999587843999
No 193
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.79 E-value=0.85 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=26.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 144316654324899999998751127549998
Q gi|254780947|r 648 DRLICGDVGFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 648 DRLiCGDVGfGKTEVA~RAafkav~~gkQvavl 680 (1187)
=-.-||| |=|||--||--|+.|+-.|+.|.++
T Consensus 24 I~VYTGd-GKGKTTAAlGlalRA~G~G~rV~iv 55 (178)
T PRK07414 24 VQVFTSS-QRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999579-9980899999999995399879999
No 194
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.77 E-value=1.3 Score=23.53 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 089803765227999999
Q gi|254780947|r 17 KITLSPVIDGTEGFILAE 34 (1187)
Q Consensus 17 ~i~l~Gl~gs~~allla~ 34 (1187)
=+.++|-+|++|+.++.+
T Consensus 21 l~vi~g~pg~GKS~~~~~ 38 (186)
T pfam03796 21 LIIIAARPSMGKTAFALN 38 (186)
T ss_pred EEEEEECCCCCHHHHHHH
T ss_conf 799996799987999999
No 195
>KOG0949 consensus
Probab=90.69 E-value=0.49 Score=26.75 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=63.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCC--CCCEEE
Q ss_conf 648886134674789999999963887579761020036332233266762502358860455322103567--673699
Q gi|254780947|r 861 LKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSK--IASFAL 938 (1187)
Q Consensus 861 ~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~--~~ayay 938 (1187)
--|||-|.-|+.+.=--|=.=|-.|...||.+|.-.--||.+|--..++--|.=.+-----+|+-||-||.+ +-+---
T Consensus 963 RGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949 963 RGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEHHCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 42441124401688879999864485689998211011268874168970352213714577662403344555556558
Q ss_pred EE-ECCC
Q ss_conf 99-6688
Q gi|254780947|r 939 FL-LPEN 944 (1187)
Q Consensus 939 l~-~~~~ 944 (1187)
|+ +|..
T Consensus 1043 FmgiP~~ 1049 (1330)
T KOG0949 1043 FMGIPRQ 1049 (1330)
T ss_pred EEECCHH
T ss_conf 8727599
No 196
>KOG0923 consensus
Probab=90.69 E-value=1.3 Score=23.48 Aligned_cols=327 Identities=18% Similarity=0.211 Sum_probs=212.1
Q ss_pred HHHCCCCCCCCHHHHHHHH--HHCCCCCCHH---H------HHHHHHHHHHCCCCC-----------CCCEEEECCCCCC
Q ss_conf 7401567787846789899--8488888744---8------999999987605988-----------5414431665432
Q gi|254780947|r 601 AIHSVPPLMVSQDLYSQFI--KRFPHVETED---Q------EKAIDAVIQDLSSGR-----------LMDRLICGDVGFG 658 (1187)
Q Consensus 601 ~~~~g~~f~~d~~~~~eFe--~~FpyeET~D---Q------~~AI~eV~~Dmes~~-----------PMDRLiCGDVGfG 658 (1187)
+...||-|.-|+..+..|- ..-+-++-+| + ...|+++..-+---. --==+|.|+-|-|
T Consensus 213 ~~~~~ye~vfdd~~~idF~~e~~~~~~~e~~~~~~~~~~~~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSG 292 (902)
T KOG0923 213 EGSDGYEFVFDDQIVIDFIQESKLAGSNEEDAKDAPTAYERRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSG 292 (902)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 55667501325315563777642146674322202578898877999873388606399999999867089997578898
Q ss_pred HHHHH----HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 48999----999987511275499982436655589999998606-7898335410666302567777531225760898
Q gi|254780947|r 659 KTEIA----LRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQ-GFSVRIASISRFVQTKEAALHKKSITEGQVDIVI 733 (1187)
Q Consensus 659 KTEVA----~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~-~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idivi 733 (1187)
||--- --|-|- ..||-+++--|--|-|.---.--.+-|. ..+-.|+.==||-...--|-+++=+-+|-.
T Consensus 293 KTTQiPQyL~EaGyt--k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmL---- 366 (902)
T KOG0923 293 KTTQIPQYLYEAGYT--KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGML---- 366 (902)
T ss_pred CCCCCCHHHHHCCCC--CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCHHH----
T ss_conf 644562898854213--58946740685068877799999998574014314448885035674122432243067----
Q ss_pred ECHHHHCCCCCCCCCCEEEEECHHH--------HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCC
Q ss_conf 5206542785202365699722233--------00888998863167884899953534088999971222541220157
Q gi|254780947|r 734 GTHALLNPKITFANLGLIIIDEEQH--------FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPP 805 (1187)
Q Consensus 734 GTH~ll~~~v~f~~LgLliiDEEqr--------FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP 805 (1187)
+|=+..+-....-..+||||-|- ||.- |. |-..|+..-+|-.|||==---. |--=|=--|=--|
T Consensus 367 --lREfL~epdLasYSViiiDEAHERTL~TDILfgLv-KD-Iar~RpdLKllIsSAT~DAekF----S~fFDdapIF~iP 438 (902)
T KOG0923 367 --LREFLSEPDLASYSVIIVDEAHERTLHTDILFGLV-KD-IARFRPDLKLLISSATMDAEKF----SAFFDDAPIFRIP 438 (902)
T ss_pred --HHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHH-HH-HHHHCCCCEEEEECCCCCHHHH----HHHCCCCCEEECC
T ss_conf --99871463422335999602432003456799987-88-8750876047732222678999----8761688577236
Q ss_pred CCCCCEEEEEEECCHH-HHHHHHHHHHH-----HCCEEEEEECCCCCHHHHHHHHHHH-------CCCCCEEEEECCCCH
Q ss_conf 8877537999857978-98999998987-----1885999826446928899999861-------654648886134674
Q gi|254780947|r 806 INRIACRTSISIFDPL-VVRETLMREYY-----RGGQSFYVCPRLSDLEKCYTFLQSE-------VPELKIAMAHGQMSP 872 (1187)
Q Consensus 806 ~~R~~v~T~v~~~~~~-~i~~ai~rEl~-----RgGQvf~v~nrv~~i~~~~~~l~~l-------~p~~~i~vaHGqm~~ 872 (1187)
-.|+||-+|-.+--+. -|-.||.+=+. -+|-+..--.--+.|+.+.+.|+++ .+|.-|.-.|.-++.
T Consensus 439 GRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPs 518 (902)
T KOG0923 439 GRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPS 518 (902)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 86565134304588530799988654046751577657999446789999999999999985336550798400046986
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEEC-------HHHCCCCHHH----------HHHHHCCCCCCCC
Q ss_conf 7899999999638875797610200363322332667625-------0235886045----------5322103567673
Q gi|254780947|r 873 KNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQR-------ADMFGLAQLY----------QLRGRVGRSKIAS 935 (1187)
Q Consensus 873 ~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~-------ad~~GLaqly----------QlrGRVGRs~~~a 935 (1187)
..--+|..---+|---|.++|+|-||-|-|+..|-.|=-. -++=|.-+|. |=-||-||-+- +
T Consensus 519 elQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP-G 597 (902)
T KOG0923 519 ELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP-G 597 (902)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCHHHCEEECCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHCCCCCCCCC-C
T ss_conf 888763588998850489861101210544675899667621124768776850677763110004444234578899-7
Q ss_pred EEEEEEC
Q ss_conf 6999966
Q gi|254780947|r 936 FALFLLP 942 (1187)
Q Consensus 936 yayl~~~ 942 (1187)
-||=+|.
T Consensus 598 KCfRLYt 604 (902)
T KOG0923 598 KCFRLYT 604 (902)
T ss_pred CEEEEEC
T ss_conf 2578500
No 197
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=90.29 E-value=0.47 Score=26.84 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=33.1
Q ss_pred CCEEEECCCCCCHHHHHHHHH-----HHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 860898037652279999999-----8629989999299899999999999857
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEI-----ARLGLSLVYICSDERILINLKKILTLVV 63 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l-----~~~~rpilvI~~d~~~A~~l~~dL~~f~ 63 (1187)
+.-+.+.|-+|++|+.++.++ .+.+.++++|+-+ ...+++.+.++.|.
T Consensus 19 gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~e-e~~~~l~~~~~~~g 71 (231)
T pfam06745 19 GRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLE-EPPEDLRENAKSFG 71 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHHHCC
T ss_conf 969999858972599999999999998658968999813-79999999999829
No 198
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=90.02 E-value=1.5 Score=23.07 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=52.7
Q ss_pred EEECCCCCCHHHHHHHHHHH-CCCCEEEEECC----------HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCH
Q ss_conf 89803765227999999986-29989999299----------89999999999985799809985722467010048998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIAR-LGLSLVYICSD----------ERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSP 86 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~-~~rpilvI~~d----------~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~ 86 (1187)
+.+.|.+|++|+.++..+++ .+.+++.|... .....++.+...... ..|+++-+-|.+.-++...+.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~--p~Il~iDe~d~l~~~~~~~~~ 78 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLA--PCVIFIDEIDALAGSRGSGGD 78 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHCCCCCCCC
T ss_conf 987899999999999999999789853324201222334506888999999999749--918983116777516788888
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCEEEEECHHHHHCCCCCHHHHH
Q ss_conf 9999999999998412-446887699956678523699866885
Q gi|254780947|r 87 YVVTRRLSCISNLVSF-NSSKETIIVLTTVSAVMCRSVNIMSIK 129 (1187)
Q Consensus 87 di~~eRl~~L~~L~~~-~~~~~~~IIVtt~~ALlqklpp~~~l~ 129 (1187)
.....-+.+|-..... .....+.++|.|.+. ..+++| ..+.
T Consensus 79 ~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~-~~~ld~-al~r 120 (131)
T pfam00004 79 SESRRVVNQLLTELDGFTSSLSKVIVIAATNR-PDKLDP-ALLR 120 (131)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC-HHHCCH-HHHC
T ss_conf 75132687899998502246887699997599-044997-7962
No 199
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family; InterPro: IPR004473 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the R subunit (HsdR) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity , , , .; GO: 0003677 DNA binding, 0005524 ATP binding, 0009035 Type I site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system.
Probab=89.84 E-value=1.5 Score=22.97 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=80.7
Q ss_pred CCCCCHHHH---HHHHHHH----CCCCEEEEECCHHH-HHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHH
Q ss_conf 376522799---9999986----29989999299899-999999999857998099857224670100489989999999
Q gi|254780947|r 22 PVIDGTEGF---ILAEIAR----LGLSLVYICSDERI-LINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRL 93 (1187)
Q Consensus 22 Gl~gs~~al---lla~l~~----~~rpilvI~~d~~~-A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl 93 (1187)
--.||+++| .+|.++. ...|.|+++=|-++ =.|+++++..+.. . |++ -|+...| .
T Consensus 330 HtQGSGKtlTm~f~A~k~~~~~~~~~p~v~fvvDR~eLd~Ql~~~~~~~~~-~----~~~---~~~~~eS---------~ 392 (813)
T TIGR00348 330 HTQGSGKTLTMLFLARKLRKQKELKNPKVFFVVDRRELDEQLYKEFSSLKD-L----IKD---CAERIES---------I 392 (813)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHH-H----CHH---HHHCCCC---------H
T ss_conf 850763788999999999874652698499997272778899999987642-0----101---0420678---------8
Q ss_pred HHHHHHHHCCC-------CCCCEEEEECHHHHHC----CCCCHHHHHCCEEE--EECCCC--------------------
Q ss_conf 99999841244-------6887699956678523----69986688515489--940974--------------------
Q gi|254780947|r 94 SCISNLVSFNS-------SKETIIVLTTVSAVMC----RSVNIMSIKDYKLS--IQSKDQ-------------------- 140 (1187)
Q Consensus 94 ~~L~~L~~~~~-------~~~~~IIVtt~~ALlq----klpp~~~l~~~~l~--L~vGd~-------------------- 140 (1187)
+-|..++..+. ..+..|++|++.=+-. ++ .+.......+ +...+-
T Consensus 393 ~~Lk~~L~~~~~sennPn~~k~g~~~t~IqKF~~~~~~k~--~e~~~~~~~~i~~~r~~vv~i~DEaHRsqyG~tqklhn 470 (813)
T TIGR00348 393 AELKELLEKNDESENNPNISKRGIIITTIQKFDDELLDKL--KEEEEKFPESIIIDRKEVVVIIDEAHRSQYGKTQKLHN 470 (813)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHH--HHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCC
T ss_conf 8999987517764567553567679996001040344536--88874387368987160899970675553534110004
Q ss_pred --------CCHHHHHHHHHHCCCEECCCC-CCC------CEEE-EECCEEEEECCC----CC--CCEEEECCCC
Q ss_conf --------199999999998288455452-178------3165-457475730698----88--7268863487
Q gi|254780947|r 141 --------IDMAKVIEKLETNGFQRVNAV-YKV------GEYA-VRGGILDVYEPT----KK--YPVRLDFFGN 192 (1187)
Q Consensus 141 --------id~~~L~~~Lv~~GY~Rv~~V-e~~------GEFA-vRGgIIDIFp~~----~~--~PiRIEFFGD 192 (1187)
=.+..+...=...||+=||.- .++ +.|+ .-|.=||.|+.. .. .+++|.+-.-
T Consensus 471 GkfqtGla~~~~~~lknA~f~gFTGTPI~~~d~~T~nP~~~fgy~~e~Ylh~Y~I~dai~Dg~V~~v~i~Y~~~ 544 (813)
T TIGR00348 471 GKFQTGLAKALKKALKNASFFGFTGTPISKKDRDTFNPLEVFGYPFEKYLHRYFITDAIRDGKVVTVKIEYEAR 544 (813)
T ss_pred CHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHCCCCCCCEEEECCHHHHHHCCCEEEEEEEECCH
T ss_conf 41358999999874311201012247765324776662100267898643103214552078457887432101
No 200
>KOG1000 consensus
Probab=89.55 E-value=1.4 Score=23.20 Aligned_cols=322 Identities=20% Similarity=0.242 Sum_probs=155.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 99848888874489999999876059885414431665432489999999875112754999824366555899999986
Q gi|254780947|r 618 FIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSER 697 (1187)
Q Consensus 618 Fe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~R 697 (1187)
.+.-|||. . +-|.--++++--| ||.-|.|-|||=-|+- .-...-+-.-..|+||..++- -+.--.+|
T Consensus 196 vs~LlPFQ-----r---eGv~faL~RgGR~--llADeMGLGKTiQAla-IA~yyraEwplliVcPAsvrf--tWa~al~r 262 (689)
T KOG1000 196 VSRLLPFQ-----R---EGVIFALERGGRI--LLADEMGLGKTIQALA-IARYYRAEWPLLIVCPASVRF--TWAKALNR 262 (689)
T ss_pred HHHHCCHH-----H---HHHHHHHHCCCEE--EEECCCCCCHHHHHHH-HHHHHHHCCCEEEEECHHHHH--HHHHHHHH
T ss_conf 87617035-----6---5478898538739--9841245416889999-999986048679992278868--99999998
Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHH-CCCCCEEEEECHHHHC---CCCCCCCCCEEEEECHHHHHHHHHHHHHH----
Q ss_conf 067898335410666302567777531-2257608985206542---78520236569972223300888998863----
Q gi|254780947|r 698 FQGFSVRIASISRFVQTKEAALHKKSI-TEGQVDIVIGTHALLN---PKITFANLGLIIIDEEQHFGVKHKEALKE---- 769 (1187)
Q Consensus 698 f~~~pv~i~~lsRf~~~~e~~~i~~~l-~~G~idiviGTH~ll~---~~v~f~~LgLliiDEEqrFGV~~Ke~lk~---- 769 (1187)
|-+---.|-+.-+- + .-+..+ ..++|.||= -.+|| +-..-..-++||+||-|..--.++-+.|.
T Consensus 263 ~lps~~pi~vv~~~---~---D~~~~~~t~~~v~ivS--ye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dl 334 (689)
T KOG1000 263 FLPSIHPIFVVDKS---S---DPLPDVCTSNTVAIVS--YEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDL 334 (689)
T ss_pred HCCCCCCEEEEECC---C---CCCCCCCCCCEEEEEE--HHHHHHHHHHHHCCCCEEEEEECHHHHHCCCHHHHHHHHHH
T ss_conf 53102604788526---6---7765456677278987--89999999987365411899712565410112236666569
Q ss_pred CCCCCCEEEEECCCC---CH-----------HHH--HHHHC---------------------------------CCCC--
Q ss_conf 167884899953534---08-----------899--99712---------------------------------2254--
Q gi|254780947|r 770 THTGVHVLTLSATPI---PR-----------TLQ--LAITG---------------------------------VREL-- 798 (1187)
Q Consensus 770 ~~~~vdvLtlsATPI---PR-----------TL~--msl~g---------------------------------~rd~-- 798 (1187)
++.--||+-||-||- |- ||- ..=-| ||-+
T Consensus 335 lk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~ 414 (689)
T KOG1000 335 LKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKA 414 (689)
T ss_pred HHHHHHEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98764447723885567814421355541210042289987775376411024503778778999999999999999999
Q ss_pred CEE-ECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEE------------EEEECCCCCHHHHHHHHHH--HCCCC--
Q ss_conf 122-015788775379998579789899999898718859------------9982644692889999986--16546--
Q gi|254780947|r 799 SLI-SMPPINRIACRTSISIFDPLVVRETLMREYYRGGQS------------FYVCPRLSDLEKCYTFLQS--EVPEL-- 861 (1187)
Q Consensus 799 S~i-~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQv------------f~v~nrv~~i~~~~~~l~~--l~p~~-- 861 (1187)
-++ .-||. |+ .-+++..-....-..|+..|-.-+--| ||----+-.+..+.+.|-. ++|++
T Consensus 415 dvL~qLPpK-rr-~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~ 492 (689)
T KOG1000 415 DVLKQLPPK-RR-EVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPP 492 (689)
T ss_pred HHHHHCCCC-CE-EEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 887538801-04-8999747862267899998753200123666656778878987511020889999974744456887
Q ss_pred --CEEEEE-----------------------CCCCHHHHHHHHHHHHCCC-CC-EEEECCCEECCCCCCCCCEEEEECHH
Q ss_conf --488861-----------------------3467478999999996388-75-79761020036332233266762502
Q gi|254780947|r 862 --KIAMAH-----------------------GQMSPKNLEDKMNAFYEGQ-YD-VLLSTSIVESGLDLPKANTMIVQRAD 914 (1187)
Q Consensus 862 --~i~vaH-----------------------Gqm~~~~le~~m~~F~~~~-~d-vLv~TtIiEsGlDip~aNTiii~~ad 914 (1187)
=+..|| |.-+.++=+.....|...+ .- -+++-|---.||+...|.-.+- --=
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF-aEL 571 (689)
T KOG1000 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF-AEL 571 (689)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCEEEE-EEE
T ss_conf 3599994148799999999987479758856989843478999873146314799999863144414651325899-982
Q ss_pred HCCCCHHHHHHHHCCCCCCCC---EEEEEECCCC--CCCHHHHHHHHHHHHHCC
Q ss_conf 358860455322103567673---6999966888--889889999999997255
Q gi|254780947|r 915 MFGLAQLYQLRGRVGRSKIAS---FALFLLPENR--PLTAAAQKRLRILQSLNT 963 (1187)
Q Consensus 915 ~~GLaqlyQlrGRVGRs~~~a---yayl~~~~~~--~l~~~a~kRL~ai~~~~~ 963 (1187)
.+-=+=|-|---|+-|-+... --||.-.... .+=..-++.|..|.+.+.
T Consensus 572 ~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl 625 (689)
T KOG1000 572 HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGL 625 (689)
T ss_pred CCCCCEEEECHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 378754775146566405665113899995484577778999999878866256
No 201
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=88.82 E-value=1.8 Score=22.45 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=7.3
Q ss_pred CCEEEEEECCHHHHHHHHHH
Q ss_conf 98299995894589999986
Q gi|254780947|r 408 GIKTIISASSQGALQHLIHL 427 (1187)
Q Consensus 408 g~rViI~a~s~~~~eRL~el 427 (1187)
+-.+++++-+.-..|.+...
T Consensus 101 ~~div~vglG~PkQE~~~~~ 120 (172)
T pfam03808 101 GPDLLFVGLGAPKQEKWIAR 120 (172)
T ss_pred CCCEEEEECCCCHHHHHHHH
T ss_conf 99999995698177999999
No 202
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=88.80 E-value=0.69 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH-CCCCEEEEECCHHH
Q ss_conf 4886089803765227999999986-29989999299899
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIAR-LGLSLVYICSDERI 51 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d~~~ 51 (1187)
+.+.|+++.|-.|++|+=++-++|+ .+||+++|.-|.+-
T Consensus 19 ~~G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL 58 (265)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAEL 58 (265)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 2788667447888556899999997368968998658232
No 203
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.72 E-value=1.7 Score=22.61 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHCCCC
Q ss_conf 945899999867764887
Q gi|254780947|r 417 SQGALQHLIHLIESHGFK 434 (1187)
Q Consensus 417 s~~~~eRL~elL~e~gI~ 434 (1187)
+.....++.++-++++++
T Consensus 115 ~~~~~~~iN~~cR~~~i~ 132 (286)
T cd01491 115 SLEDQLKINEFCHSPGIK 132 (286)
T ss_pred CHHHHHHHHHHHHHCCCE
T ss_conf 989999998888775981
No 204
>KOG4150 consensus
Probab=88.71 E-value=1.2 Score=23.64 Aligned_cols=199 Identities=18% Similarity=0.238 Sum_probs=115.3
Q ss_pred HHHCCCCCCC----CCCEEEEECHHH----HHHHHHHHHHHC---------CCCCCEEEEECCCCCHHHHHH-HHCCCCC
Q ss_conf 6542785202----365699722233----008889988631---------678848999535340889999-7122254
Q gi|254780947|r 737 ALLNPKITFA----NLGLIIIDEEQH----FGVKHKEALKET---------HTGVHVLTLSATPIPRTLQLA-ITGVREL 798 (1187)
Q Consensus 737 ~ll~~~v~f~----~LgLliiDEEqr----FGV~~Ke~lk~~---------~~~vdvLtlsATPIPRTL~ms-l~g~rd~ 798 (1187)
+.|-+...|. .+-++.+||=|- ||--.-..++.| -.|.-+..-+||-=-||-||+ |.|+-++
T Consensus 398 ~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~ 477 (1034)
T KOG4150 398 AALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSEL 477 (1034)
T ss_pred HHHCCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCE
T ss_conf 86033334330768877740230012303336689999999999987788605841684788767777889985587604
Q ss_pred CEEEC--CCCCCCCEEEEEEECCHH-----------HHHH--HHHHHHHHCCE--EEEEECCCCCHHHHHHHHHHHCCC-
Q ss_conf 12201--578877537999857978-----------9899--99989871885--999826446928899999861654-
Q gi|254780947|r 799 SLISM--PPINRIACRTSISIFDPL-----------VVRE--TLMREYYRGGQ--SFYVCPRLSDLEKCYTFLQSEVPE- 860 (1187)
Q Consensus 799 S~i~t--pP~~R~~v~T~v~~~~~~-----------~i~~--ai~rEl~RgGQ--vf~v~nrv~~i~~~~~~l~~l~p~- 860 (1187)
-+|.. -|..- +- ..-||+. -|+| -|.-|+--.|- +-|-+-| .--+-+....++++-|
T Consensus 478 ~Li~~DGSPs~~---K~-~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R-~~CEL~~~~~R~I~~ET 552 (1034)
T KOG4150 478 ELVTIDGSPSSE---KL-FVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSR-KLCELVLCLTREILAET 552 (1034)
T ss_pred EEEEECCCCCCC---CE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHH-HHHHHHHHHHHHHHHHH
T ss_conf 999715998774---16-99968999983034432389999999999997187389963289-89999999999999874
Q ss_pred CC-----EEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 64-----8886134674789999999963887579761020036332233266762502358860455322103567673
Q gi|254780947|r 861 LK-----IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIAS 935 (1187)
Q Consensus 861 ~~-----i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQlrGRVGRs~~~a 935 (1187)
++ |---.|--...+--++-.+.++|+.--.++|.-.|-||||-.-...+.- .=-+.+|-|+|--||-||.|+-.
T Consensus 553 ~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~-GFP~S~aNl~QQ~GRAGRRNk~S 631 (1034)
T KOG4150 553 APHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHL-GFPGSIANLWQQAGRAGRRNKPS 631 (1034)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEEECCHHHHCCCCCCCCEEEEC-CCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 47899999861477535567777888517826899853607444243564368982-68506778998721101568984
Q ss_pred EEEEEE
Q ss_conf 699996
Q gi|254780947|r 936 FALFLL 941 (1187)
Q Consensus 936 yayl~~ 941 (1187)
.|..+.
T Consensus 632 Lavyva 637 (1034)
T KOG4150 632 LAVYVA 637 (1034)
T ss_pred EEEEEE
T ss_conf 489997
No 205
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=88.70 E-value=1.8 Score=22.39 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=10.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99966888889889999999997
Q gi|254780947|r 938 LFLLPENRPLTAAAQKRLRILQS 960 (1187)
Q Consensus 938 yl~~~~~~~l~~~a~kRL~ai~~ 960 (1187)
|+.|++++.||..|++=++.+.+
T Consensus 271 ~i~~rk~~~Ls~~a~~Fie~l~~ 293 (308)
T PRK12683 271 RVALRRGAYLRGYAYRFIEMFAP 293 (308)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99990968579999999999888
No 206
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.66 E-value=1.3 Score=23.49 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 66543248999999987511275499982436655589999998606789833541066630256777753122576089
Q gi|254780947|r 653 GDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIV 732 (1187)
Q Consensus 653 GDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiv 732 (1187)
---|=|||-||+-=|-..++.|+-|.++= |.=+--+..++|..- . ..|-.|++
T Consensus 539 ~~pgEGKSt~a~nLA~~~A~~G~rvLLID-----~DlRrp~l~~~~~~~--------------~--------~~GLs~~L 591 (726)
T PRK09841 539 ATPDSGKTFVSSTLAAVIAQSDQKVLFID-----ADLRRGYSHNLFTVS--------------N--------EHGLSEYL 591 (726)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEC-----CCCCCCCHHHHCCCC--------------C--------CCCHHHHH
T ss_conf 99999779999999999984799599982-----887771077615999--------------9--------98779983
Q ss_pred EECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCH------------HHHHHHHCCCCCC
Q ss_conf 852065427852023656997222330088899886-316788489995353408------------8999971222541
Q gi|254780947|r 733 IGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALK-ETHTGVHVLTLSATPIPR------------TLQLAITGVRELS 799 (1187)
Q Consensus 733 iGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk-~~~~~vdvLtlsATPIPR------------TL~msl~g~rd~S 799 (1187)
.|++.+ .+ -++ .-.+|+||| +|-|+|- .|=-.|..-=|+=
T Consensus 592 ~g~~~~-------~~------------------~i~~~~~~~ldvl--~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~I 644 (726)
T PRK09841 592 AGKDEL-------NK------------------VIQHFGKGGFDVI--TRGQVPPNPSELLMRDRMRQLLEWANDHYDLV 644 (726)
T ss_pred CCCCCH-------HH------------------HCCCCCCCCEEEE--ECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEE
T ss_conf 899988-------99------------------3302798998998--28999979899958769999999998139999
Q ss_pred EEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 22015788775379998579789899999898718859998264469288999998616546488861346747899999
Q gi|254780947|r 800 LISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKM 879 (1187)
Q Consensus 800 ~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf~v~nrv~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m 879 (1187)
||.|||.--.+ |.. -|..++-..=+.|=||+-+.++++..+
T Consensus 645 IiDtPPvl~v~---------Da~------------------------------~l~~~~D~~l~Vvr~g~T~~~~~~~a~ 685 (726)
T PRK09841 645 IVDTPPMLAVS---------DAA------------------------------VVGRSVGTSLLVARFGLNTAKEVSLSM 685 (726)
T ss_pred EEECCCCCCCC---------HHH------------------------------HHHHHCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99199965341---------599------------------------------999978959999979968899999999
Q ss_pred HHHHCCCCCEE
Q ss_conf 99963887579
Q gi|254780947|r 880 NAFYEGQYDVL 890 (1187)
Q Consensus 880 ~~F~~~~~dvL 890 (1187)
..+-+....|+
T Consensus 686 ~~l~~~~~~v~ 696 (726)
T PRK09841 686 QRLEQAGVNIK 696 (726)
T ss_pred HHHHHCCCCEE
T ss_conf 99997899758
No 207
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.59 E-value=1.8 Score=22.34 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=51.2
Q ss_pred HHHHHHHC---CCCEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCH---HHHHHHH-HHHHHHCCCCEEEECCCC
Q ss_conf 78876514---88608980376522799999998----6299899992998---9999999-999985799809985722
Q gi|254780947|r 6 DIERISEK---YCKKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDE---RILINLK-KILTLVVPDIRVIIFPAW 74 (1187)
Q Consensus 6 ~~~~~~~k---~~~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~---~~A~~l~-~dL~~f~~~~~V~~FP~~ 74 (1187)
.+.++..- .++-+.+.|-+|++|+.++.+++ +.+..+++|.--. .+..++. ..+.... .+++++-..
T Consensus 7 ~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~--~~i~v~~~~ 84 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAA--SSIIVFEPM 84 (218)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCEEECCC
T ss_conf 899985699878879999899998499999999999863698699996655676999999875366653--051462678
Q ss_pred CCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHC
Q ss_conf 4670100489989999999999998412446887699956678523
Q gi|254780947|r 75 DCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120 (1187)
Q Consensus 75 E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlq 120 (1187)
+ -+-...-++.+..+. ..+...|||-|+.++..
T Consensus 85 ~----------~~~~~~~i~~~~~~~---~~~~~lvViDSi~tl~~ 117 (218)
T cd01394 85 D----------FNEQGRAIQETETFA---DEKVDLVVVDSATALYR 117 (218)
T ss_pred C----------HHHHHHHHHHHHHHH---HCCCCEEEEECCHHHHH
T ss_conf 7----------688999999999764---14772999914045545
No 208
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.54 E-value=1.8 Score=22.32 Aligned_cols=181 Identities=22% Similarity=0.211 Sum_probs=109.6
Q ss_pred HHHHHHHHHHCCCCCCCCEE---------EECCCCCCHHH-HHHHHHHHHHCCCCEEEEEECHH--HHHHHHHHHHHHHH
Q ss_conf 99999998760598854144---------31665432489-99999987511275499982436--65558999999860
Q gi|254780947|r 631 EKAIDAVIQDLSSGRLMDRL---------ICGDVGFGKTE-IALRAAFIAVMNGLQVAVIAPTT--LLVRQHFRLFSERF 698 (1187)
Q Consensus 631 ~~AI~eV~~Dmes~~PMDRL---------iCGDVGfGKTE-VA~RAafkav~~gkQvavlvPTT--iLa~QH~~tf~~Rf 698 (1187)
...|.=|+.||+|..--.-. +.|=-|-|||- +|==|| .....+|.||++.--| |=|.+-.+|+.+-+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~q~IALVGPTGVGKTTTIAKLAA-rf~~~~KkVALITtDTYRIGAVEQLKTYAeIM 295 (436)
T PRK11889 217 EEVIKYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAW-QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI 295 (436)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHH-HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99999999998874031013364171799989999888999999999-98616980899980663476999999999984
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCC-CCCE-EEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 6789833541066630256777753122-5760-8985206542785202365699722233008889988631678848
Q gi|254780947|r 699 QGFSVRIASISRFVQTKEAALHKKSITE-GQVD-IVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV 776 (1187)
Q Consensus 699 ~~~pv~i~~lsRf~~~~e~~~i~~~l~~-G~id-iviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdv 776 (1187)
+-||.|. .++.+-.+.+..+++ ...| |+|-|----++|- +| =-..++-+....+.--.
T Consensus 296 -gVPV~VV-----~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~------------~~--I~EL~~~l~~~~p~ev~ 355 (436)
T PRK11889 296 -GFEVIAV-----RDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS------------ET--VEEMIETMGQVEPDYIC 355 (436)
T ss_pred -CCCEEEE-----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH------------HH--HHHHHHHHHHCCCCEEE
T ss_conf -9943996-----8889999999987633688889992989884689------------99--99999998512777169
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHH-HHHHHHHHHHCCEEEEEEC
Q ss_conf 99953534088999971222541220157887753799985797898-9999989871885999826
Q gi|254780947|r 777 LTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVV-RETLMREYYRGGQSFYVCP 842 (1187)
Q Consensus 777 LtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i-~~ai~rEl~RgGQvf~v~n 842 (1187)
|+||||-=++.|......-+.+. .++. |-| ..|+..- -+++.-=...+=-+.|+-|
T Consensus 356 LVLSATTK~~DL~eIi~rF~~l~------idgl-IfT---KLDET~SlG~ILNv~~~s~LPIsYvTd 412 (436)
T PRK11889 356 LTLSASMKSKDMIEIITNFKDIH------IDGI-VFT---KFDETASSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred EEEECCCCHHHHHHHHHHHCCCC------CCEE-EEE---ECCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf 99978899899999999725799------8828-997---132568703788899883998799789
No 209
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=88.33 E-value=1.2 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=18.2
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 98299995894589999986776488733
Q gi|254780947|r 408 GIKTIISASSQGALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 408 g~rViI~a~s~~~~eRL~elL~e~gI~~~ 436 (1187)
|.+|+.+ ..-+.-+++.+.|++.|+...
T Consensus 237 ~k~v~a~-aGIgnP~~F~~~L~~~g~~~~ 264 (332)
T PRK00313 237 GQALHAV-AGIGNPQRFFNTLEGLHWRPV 264 (332)
T ss_pred CCEEEEE-ECCCCHHHHHHHHHHCCCEEE
T ss_conf 8828999-815987999999998799376
No 210
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.94 E-value=0.98 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=11.4
Q ss_pred HHHHH-HHHHCCCCEEEEEC
Q ss_conf 99999-99862998999929
Q gi|254780947|r 29 GFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 29 allla-~l~~~~rpilvI~~ 47 (1187)
.+.+| ..++.++.+.+|-.
T Consensus 53 G~~AA~~Aa~~G~kValIE~ 72 (541)
T PTZ00052 53 GMASAKEAAAHGAKVLLFDY 72 (541)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999988990999942
No 211
>PRK09134 short chain dehydrogenase; Provisional
Probab=87.84 E-value=2 Score=22.01 Aligned_cols=50 Identities=8% Similarity=-0.009 Sum_probs=30.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHHHHHHC
Q ss_conf 8860898037652279999999862998999-9299899999999999857
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIARLGLSLVY-ICSDERILINLKKILTLVV 63 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~~~rpilv-I~~d~~~A~~l~~dL~~f~ 63 (1187)
.+|...++|...+--.-++..|++.+-.+++ .-.+...++.+.++++...
T Consensus 8 ~~KvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g 58 (256)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALG 58 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999799948867899999999998799899984999899999999999649
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.82 E-value=0.94 Score=24.53 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=33.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 1443166543248999999987511275499982436655
Q gi|254780947|r 648 DRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 648 DRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
.=|+.|+||-|||-.|.=-|=.+...|+-|.++..+.++.
T Consensus 185 nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~ 224 (330)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIE 224 (330)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf 6698899999889999999999998799499962999999
No 213
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=86.99 E-value=1.2 Score=23.84 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=16.0
Q ss_pred EEECCCCCCHHHHHHH-HHHHCCCCEEEEEC
Q ss_conf 8980376522799999-99862998999929
Q gi|254780947|r 18 ITLSPVIDGTEGFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 18 i~l~Gl~gs~~allla-~l~~~~rpilvI~~ 47 (1187)
+.++|=||+ +++| ..++.+..+++|=.
T Consensus 5 vViGgGPGG---YVAAIrAAQlG~KValvEK 32 (481)
T TIGR01350 5 VVIGGGPGG---YVAAIRAAQLGLKVALVEK 32 (481)
T ss_pred EEECCCCCH---HHHHHHHHHCCCEEEEEEE
T ss_conf 998778772---7999999864980899980
No 214
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=86.91 E-value=0.85 Score=24.90 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 741999999999982
Q gi|254780947|r 139 DQIDMAKVIEKLETN 153 (1187)
Q Consensus 139 d~id~~~L~~~Lv~~ 153 (1187)
+.+|.+.|.+.|..+
T Consensus 60 ~afD~~ll~~~L~~L 74 (220)
T cd02025 60 ESYDMEALLKFLKDI 74 (220)
T ss_pred HHCCHHHHHHHHHHH
T ss_conf 021599999999999
No 215
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=86.82 E-value=1 Score=24.30 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=52.8
Q ss_pred CCCCEEEEECCHHHHHHH-HHHHHHHCCCCEEEEC-------------CCCCCCCH---------HCCCCCHHHHHHHHH
Q ss_conf 299899992998999999-9999985799809985-------------72246701---------004899899999999
Q gi|254780947|r 38 LGLSLVYICSDERILINL-KKILTLVVPDIRVIIF-------------PAWDCLPY---------DRVSPSPYVVTRRLS 94 (1187)
Q Consensus 38 ~~rpilvI~~d~~~A~~l-~~dL~~f~~~~~V~~F-------------P~~E~LPY---------d~~sp~~di~~eRl~ 94 (1187)
...|.|=++|+.+++..+ -+++.-+.-|.-.--+ =.+.--.| +.-.|-+.-+-.|++
T Consensus 52 ~ed~~~~~vP~~~e~~~ial~~~~~~iad~~A~R~v~~~iE~~ve~~l~erq~~Yl~Eir~~vlk~~~g~En~sTLKkl~ 131 (616)
T TIGR02903 52 LEDKGLEVVPDAKELAEIALEDTEDHIADILARRTVENEIERKVEKKLQERQNKYLEEIRLQVLKEEKGPENSSTLKKLE 131 (616)
T ss_pred ECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 32883223578641268899988999999886433567889999999887666899999887752057886167889999
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999841244688769995667852369986688515489940974199999999998
Q gi|254780947|r 95 CISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLET 152 (1187)
Q Consensus 95 ~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~ 152 (1187)
-|.+|= .. =+-.|+.+||++- .|.=-|||+.-+..|+.+|.+
T Consensus 132 ~Le~Le---k~----kl~~s~~slLRP~---------~f~EiVGQerAI~aLlaK~aS 173 (616)
T TIGR02903 132 RLEKLE---KK----KLAKSIQSLLRPR---------AFSEIVGQERAIKALLAKLAS 173 (616)
T ss_pred HHHHHH---HH----HHHHHHHHHCCCC---------CCCCCCCHHHHHHHHHHHHCC
T ss_conf 875244---78----8999999862876---------676433346899999976318
No 216
>PRK04328 hypothetical protein; Provisional
Probab=86.48 E-value=0.72 Score=25.43 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=72.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCC-------EEEE---CCC-----CC
Q ss_conf 8608980376522799999998----629989999299899999999999857998-------0998---572-----24
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDI-------RVII---FPA-----WD 75 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~-------~V~~---FP~-----~E 75 (1187)
+..+.+.|-+|++|+.++.+++ +.+.+.++|+-+ ...+++.+.++.|.-+. ...+ |+. .+
T Consensus 24 gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~e-E~~~~l~~~~~~~G~d~~~~~~~g~l~iid~~~~~~~~~~~ 102 (250)
T PRK04328 24 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE-EHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGEAAE 102 (250)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE-CCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCH
T ss_conf 96999982899998999999999998769977999972-79999999999809986898656977998512333342000
Q ss_pred CCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 67010048998999999999999841244688769995667852369986688515489940974199999999998288
Q gi|254780947|r 76 CLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGF 155 (1187)
Q Consensus 76 ~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY 155 (1187)
...|- .++.+-..+-+..|..... ..+...+||-|+.++. +..+..... -+..|.+.|..+|-
T Consensus 103 ~~~~~--~~~~~~~~~~~~~l~~~i~--~~~~~rvVIDSit~l~--~~~~~~~r~-----------~l~~l~~~l~~~g~ 165 (250)
T PRK04328 103 REKYV--VKDPDDVRELIDVLRQAIR--DIGAKRVVIDSVSTLY--LTKPAVARS-----------IVMQLKRVLAGLGC 165 (250)
T ss_pred HHHHC--CCCCCCHHHHHHHHHHHHH--HHCCCEEEEECCHHHH--HCCHHHHHH-----------HHHHHHHHHHHCCC
T ss_conf 00101--3685359999999999998--5189889993707877--458588999-----------99999999986898
Q ss_pred EECCCC
Q ss_conf 455452
Q gi|254780947|r 156 QRVNAV 161 (1187)
Q Consensus 156 ~Rv~~V 161 (1187)
+-.-+.
T Consensus 166 Ttll~~ 171 (250)
T PRK04328 166 TSIFVS 171 (250)
T ss_pred EEEEEE
T ss_conf 699997
No 217
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.46 E-value=2.4 Score=21.46 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-CCCEEE-EECCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 48860898037652279999999862-998999-92998999999999998579980998
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIARL-GLSLVY-ICSDERILINLKKILTLVVPDIRVII 70 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~~~-~rpilv-I~~d~~~A~~l~~dL~~f~~~~~V~~ 70 (1187)
+.-.++.+.|-+|-+|.-++.-+++. +.++-+ =.|--..+.++..-|..+-++ .|++
T Consensus 49 e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek~~DL~~iLt~l~~~-dvLF 107 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKAGDLAALLTNLEEG-DVLF 107 (328)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCCC-CEEE
T ss_conf 9988057658899889999999999868881562450016747899999608878-7676
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=86.09 E-value=2.5 Score=21.32 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=47.9
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 01567787846789899848888874489999999876059885414431665432489999999875112754999824
Q gi|254780947|r 603 HSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAP 682 (1187)
Q Consensus 603 ~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvP 682 (1187)
..+|++.. -.++|.-+|+=.-...|+..... ..-+ .+.-+=+++|-+|-|||-.|.==+.+|+..|+.|-+.-=
T Consensus 64 ~A~fp~~k---tle~fDf~~~~~l~~~~i~~La~-~~fi--~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~ 137 (258)
T PRK09183 64 MAAFPAVK---TFEEYDFTFATGAPQKQLQSLRS-LSFI--ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 137 (258)
T ss_pred HCCCCCCC---CHHHCCCCCCCCCCHHHHHHHHC-CCHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 77999987---77555654688623899998825-8166--558867998999986899999999999987993999789
Q ss_pred HHHHH
Q ss_conf 36655
Q gi|254780947|r 683 TTLLV 687 (1187)
Q Consensus 683 TTiLa 687 (1187)
+.++.
T Consensus 138 ~~L~~ 142 (258)
T PRK09183 138 ADLLL 142 (258)
T ss_pred HHHHH
T ss_conf 99999
No 219
>PRK06921 hypothetical protein; Provisional
Probab=85.86 E-value=2.3 Score=21.50 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC--EEEEEE
Q ss_conf 443166543248999999987511275--499982
Q gi|254780947|r 649 RLICGDVGFGKTEIALRAAFIAVMNGL--QVAVIA 681 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~RAafkav~~gk--Qvavlv 681 (1187)
=+++|+||-|||-.|. |.-+..++-+ +|.++.
T Consensus 119 l~f~G~~G~GKThLa~-aIa~~Ll~~~~~~Vly~~ 152 (265)
T PRK06921 119 IALLGQPGSGKTHLLT-AAANELMRKKGVPVLYFP 152 (265)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHHCCCEEEEEE
T ss_conf 7997289898899999-999999996297199988
No 220
>PRK08181 transposase; Validated
Probab=85.84 E-value=2.5 Score=21.24 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHHHC-CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 999998760-5988541443166543248999999987511275499982436655
Q gi|254780947|r 633 AIDAVIQDL-SSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687 (1187)
Q Consensus 633 AI~eV~~Dm-es~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa 687 (1187)
.|.+..... =-.+.-+=+++|-.|-|||-+|.==+..|+..|+.|-+.-=+.++.
T Consensus 92 ~i~~L~~~~~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~ 147 (269)
T PRK08181 92 QVMALAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred HHHHHHCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf 99999656758864870899899998788999999999998799399978999999
No 221
>PRK08251 short chain dehydrogenase; Provisional
Probab=85.82 E-value=2.5 Score=21.23 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=44.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8608980376522799999998629989999299899999999999857998099857
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
.+.+.++|.+.+--.-++-++++.+..++++..+....+++.+++..-.++..|..++
T Consensus 2 ~K~vlITGAssGIG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~ 59 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAA 59 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9989994786399999999999879989999898889999999998737997399997
No 222
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.38 E-value=2.2 Score=21.72 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCEEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC
Q ss_conf 6359999869987996667521111003678885323434034899999999999999999999999887401-567787
Q gi|254780947|r 532 HDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHS-VPPLMV 610 (1187)
Q Consensus 532 ~DyL~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~-g~~f~~ 610 (1187)
++.|.-....+.+ +++++| ++-++.--+.+.+-|=|+.=.+.-.++|+ ||-=|.+-.-.++..+ |-.|+.
T Consensus 307 ~e~L~~~~~~~~~--itie~I---~~~Va~~y~v~~~dl~s~~R~~~i~~~Rq----iamyL~r~lt~~Slp~IG~~Fgr 377 (408)
T COG0593 307 KEILKDLLRAGEK--ITIEDI---QKIVAEYYNVKVSDLLSKSRTRNIVRPRQ----IAMYLARELTNLSLPEIGKAFGR 377 (408)
T ss_pred HHHHHHHHHCCCC--CCHHHH---HHHHHHHHCCCHHHHHCCCCCCCCCHHHH----HHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9999986401455--899999---99999884988999624566623431999----99999998713768999998589
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8467898998488888744899999998760598
Q gi|254780947|r 611 SQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSG 644 (1187)
Q Consensus 611 d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~ 644 (1187)
| -.-=+.|+.-|...|+..
T Consensus 378 d---------------HtTV~~a~~kI~~~~~~d 396 (408)
T COG0593 378 D---------------HTTVLHAVRKIEQLIEED 396 (408)
T ss_pred C---------------CCHHHHHHHHHHHHHHCC
T ss_conf 8---------------409999999999998658
No 223
>KOG0388 consensus
Probab=84.16 E-value=3 Score=20.69 Aligned_cols=133 Identities=20% Similarity=0.337 Sum_probs=87.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCC---C--CEEEEEECHHHHH--HHHHHHHHHHHCCCCCCEEEECCCCCCHHH
Q ss_conf 85414431665432489999999875112---7--5499982436655--589999998606789833541066630256
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMN---G--LQVAVIAPTTLLV--RQHFRLFSERFQGFSVRIASISRFVQTKEA 717 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~---g--kQvavlvPTTiLa--~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~ 717 (1187)
+-.+-.+.-+.|.|||--+| +|.|-.. + --..|++|...|- +|.+.-|.--| .+|-=.-+++|.
T Consensus 585 qGiNGILADeMGLGKTVQsi--svlAhLaE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~-------k~lpywGs~~eR 655 (1185)
T KOG0388 585 QGINGILADEMGLGKTVQSI--SVLAHLAETHNIWGPFLVVTPASTLHNWAQEISRFLPSF-------KVLPYWGSPSER 655 (1185)
T ss_pred CCCCCEEHHHHCCCHHHHHH--HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCC-------EEECCCCCHHHH
T ss_conf 03441213330453268899--999999874458876389602787767999999858654-------243476880266
Q ss_pred HHHHHHH-------CCCCCEEEEECHHHHCCC------CCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CCCEEEEECC
Q ss_conf 7777531-------225760898520654278------520236569972223300888998863167--8848999535
Q gi|254780947|r 718 ALHKKSI-------TEGQVDIVIGTHALLNPK------ITFANLGLIIIDEEQHFGVKHKEALKETHT--GVHVLTLSAT 782 (1187)
Q Consensus 718 ~~i~~~l-------~~G~idiviGTH~ll~~~------v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~--~vdvLtlsAT 782 (1187)
|...+-. +..-.+|||.+-.|+-.| |+|. -.|.||-|----.+--++|.|-+ --.-|-||.|
T Consensus 656 kiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQ---YMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGT 732 (1185)
T KOG0388 656 KILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQ---YMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGT 732 (1185)
T ss_pred HHHHHHCCHHHHHCCCCCCEEEEEEEEEEECHHHHHHHHHHH---HEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 899974044444304799528997531111159999863345---20055787764322567887740210340453188
Q ss_pred CCCHHHH
Q ss_conf 3408899
Q gi|254780947|r 783 PIPRTLQ 789 (1187)
Q Consensus 783 PIPRTL~ 789 (1187)
||--++|
T Consensus 733 PIQNsMq 739 (1185)
T KOG0388 733 PIQNSMQ 739 (1185)
T ss_pred CCCHHHH
T ss_conf 5301799
No 224
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.99 E-value=2.8 Score=20.93 Aligned_cols=20 Identities=10% Similarity=0.306 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHCCCEEEEEE
Q ss_conf 99999999986798299995
Q gi|254780947|r 396 KFLSHVAQQAQKGIKTIISA 415 (1187)
Q Consensus 396 ~L~~~I~~~~k~g~rViI~a 415 (1187)
.|..-++.+..+|.+|+++|
T Consensus 229 eff~~fn~l~~~~kqiv~ts 248 (447)
T PRK00149 229 EFFHTFNALHENNKQIVITS 248 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999998499689957
No 225
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=83.95 E-value=3 Score=20.63 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC------CCEEEEEECHHHHHHHHHHHHH
Q ss_conf 8888874489999999876059885414431665432489999999875112------7549998243665558999999
Q gi|254780947|r 622 FPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN------GLQVAVIAPTTLLVRQHFRLFS 695 (1187)
Q Consensus 622 FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~------gkQvavlvPTTiLa~QH~~tf~ 695 (1187)
|||+.=|-|+..++.|..=++.++. =|+=.=-|.|||=-.+=||+..+.+ +..+.+++-|--.-+|..+..+
T Consensus 5 FPy~py~~Q~e~m~~v~~~l~~~~~--~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~~~~~elr 82 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKI--GILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCE--EEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 8999998999999999999974997--99989996518999999999999967010245616876153788999999998
Q ss_pred H
Q ss_conf 8
Q gi|254780947|r 696 E 696 (1187)
Q Consensus 696 ~ 696 (1187)
.
T Consensus 83 ~ 83 (289)
T smart00488 83 K 83 (289)
T ss_pred H
T ss_conf 6
No 226
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=83.95 E-value=3 Score=20.63 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC------CCEEEEEECHHHHHHHHHHHHH
Q ss_conf 8888874489999999876059885414431665432489999999875112------7549998243665558999999
Q gi|254780947|r 622 FPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMN------GLQVAVIAPTTLLVRQHFRLFS 695 (1187)
Q Consensus 622 FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~------gkQvavlvPTTiLa~QH~~tf~ 695 (1187)
|||+.=|-|+..++.|..=++.++. =|+=.=-|.|||=-.+=||+..+.+ +..+.+++-|--.-+|..+..+
T Consensus 5 FPy~py~~Q~e~m~~v~~~l~~~~~--~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~~~~~elr 82 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKI--GILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCE--EEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 8999998999999999999974997--99989996518999999999999967010245616876153788999999998
Q ss_pred H
Q ss_conf 8
Q gi|254780947|r 696 E 696 (1187)
Q Consensus 696 ~ 696 (1187)
.
T Consensus 83 ~ 83 (289)
T smart00489 83 K 83 (289)
T ss_pred H
T ss_conf 6
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.91 E-value=3 Score=20.62 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=50.2
Q ss_pred EEECCCCCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCHHCCCCCHHHHH
Q ss_conf 89803765227999999986----29989999299899999999999857---998099857224670100489989999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIAR----LGLSLVYICSDERILINLKKILTLVV---PDIRVIIFPAWDCLPYDRVSPSPYVVT 90 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~----~~rpilvI~~d~~~A~~l~~dL~~f~---~~~~V~~FP~~E~LPYd~~sp~~di~~ 90 (1187)
+.+.|-+|++|+-++.+++. .+..+++|. .+.+..+....+..+. ...+...+.+... +...
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~-~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 70 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD-IEEEIEELTERLIGESLKGALDNLIIVFATAD----------DPAA 70 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC----------CCHH
T ss_conf 899989999899999999999876399799998-66644899999998622467130799935999----------7699
Q ss_pred HHHH-HHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999-9999841244688769995667852369986688515489940974199999999998
Q gi|254780947|r 91 RRLS-CISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLET 152 (1187)
Q Consensus 91 eRl~-~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~ 152 (1187)
+++. ....+.. ..+...+|+-|+.++..-. .....|..-...+-..+|.+
T Consensus 71 ~~~~~~~~~~~~--~~~~vliiiDSit~~~~a~----------~e~~~g~~~~v~~~~~~L~~ 121 (165)
T cd01120 71 ARLLSKAERLRE--RGGDDLIILDELTRLVRAL----------REIREGYPGELDEELRELLE 121 (165)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEECHHHHHHHH----------HHCCCCCHHHHHHHHHHHHH
T ss_conf 999999999998--6997799992889988774----------00158867899999999999
No 228
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=83.39 E-value=2.3 Score=21.59 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 854144316654324899999998751127549998
Q gi|254780947|r 645 RLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 645 ~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavl 680 (1187)
+-|=-+-||| |-|||--||--|..|+-.|++|+++
T Consensus 3 ~G~i~iytG~-GKGKTTAAlGlalRA~G~G~rV~iv 37 (172)
T pfam02572 3 KGLLIVYTGN-GKGKSTAAFGMALRALGHGMRVGVV 37 (172)
T ss_pred CCEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6379999579-9971889999999982599889999
No 229
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.29 E-value=3.2 Score=20.44 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=90.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 98998488888744899999998760--5988541443166543248999999987511275499982436655589999
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDL--SSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRL 693 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dm--es~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~t 693 (1187)
..|++ | |.. + =..|+..+++=- .+..|+ .|||..|-|||-.+-=.+-.+-..|+.|..+-...+ .+.
T Consensus 12 ~tfdn-F-i~~-~-N~~~~~~l~~~~~~~~~~~l--~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~-----~~~ 80 (226)
T TIGR03420 12 PTFDN-F-YAG-G-NAELLAALRQLAAGKGDRFL--YLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL-----AQA 80 (226)
T ss_pred CCHHC-C-CCC-C-HHHHHHHHHHHHHCCCCCEE--EEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHH-----HHH
T ss_conf 76312-3-658-6-79999999987646688869--998999998899999999998626995799529998-----775
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHH-H-----HH
Q ss_conf 99860678983354106663025677775312257608985206542785202365699722233008889-9-----88
Q gi|254780947|r 694 FSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHK-E-----AL 767 (1187)
Q Consensus 694 f~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~K-e-----~l 767 (1187)
+.+ ++++ +++.-+|+||.=|++.-+.. | -+
T Consensus 81 ~~~-----------------------~l~~---------------------l~~~d~l~iDDi~~i~~~~~~e~~lF~l~ 116 (226)
T TIGR03420 81 DPE-----------------------VLEG---------------------LEQADLVCLDDVEAIAGQPEWQEALFHLY 116 (226)
T ss_pred HHH-----------------------HHHH---------------------CCCCCEEEEECHHHHCCCHHHHHHHHHHH
T ss_conf 399-----------------------9972---------------------74489999966333437837899999999
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 63167884899953534088999971222541220157887753799985797898999998987188
Q gi|254780947|r 768 KETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGG 835 (1187)
Q Consensus 768 k~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgG 835 (1187)
-.++.+---+-+|++.-|+.+...+.-+| |-+.. -....+.+-|++..+.++.+-..+-|
T Consensus 117 N~~~~~~~~ilits~~~p~~l~~~l~dL~--SRl~~------~~~~~I~~pdd~~~~~iL~k~~~~r~ 176 (226)
T TIGR03420 117 NRVREAGGRLLIAGRAAPAQLPLRLPDLR--TRLAW------GLVFQLPPLSDEEKIAALQSRAARRG 176 (226)
T ss_pred HHHHHHCCEEEEECCCCHHHCCCCHHHHH--HHHHC------CCEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99986528289867888232032017799--99968------85685279999999999999999859
No 230
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.11 E-value=3.3 Score=20.39 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=30.8
Q ss_pred HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 8760598854144316654324899999998751127549998243665
Q gi|254780947|r 638 IQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLL 686 (1187)
Q Consensus 638 ~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiL 686 (1187)
...+.-.-|.-=|+.|-=|-|||=.|- |. |-..|--..-+.+..++
T Consensus 158 f~~~Gi~pPkGvLLyGPPGtGKTllAk-Av--A~e~~~~fi~v~~s~l~ 203 (390)
T PRK03992 158 FEEVGIEPPKGVLLYGPPGTGKTLLAK-AV--AHETNATFIRVVGSELV 203 (390)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHH-HH--HHHHCCCEEEEEHHHHH
T ss_conf 997699999727868989997899999-99--98748887996679975
No 231
>PTZ00301 uridine kinase; Provisional
Probab=82.89 E-value=1.8 Score=22.40 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=18.0
Q ss_pred EEECCCCCCHHHHHHHHHHH----C-C-CCEEEEECCH
Q ss_conf 89803765227999999986----2-9-9899992998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIAR----L-G-LSLVYICSDE 49 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~----~-~-rpilvI~~d~ 49 (1187)
|-++|-+||+|+.++..+.+ . + ..+.+++-|.
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~ 43 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF 43 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99968876789999999999987614998079983676
No 232
>pfam04348 LppC LppC putative lipoprotein. This family includes several bacterial outer membrane antigens, whose molecular function is unknown.
Probab=82.82 E-value=3.3 Score=20.31 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHCCC-CEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 998751127-54999824366555899999986067898335410666302567777
Q gi|254780947|r 666 AAFIAVMNG-LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHK 721 (1187)
Q Consensus 666 Aafkav~~g-kQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~ 721 (1187)
||=++..+| +++.||+|..=+.+---+.|.+++....-++...+.|..+++-...+
T Consensus 335 ~A~~~~~~G~~~~lvl~p~~~~G~R~~~AF~~~W~~~gg~~~~~~~~~~~~~l~~~i 391 (535)
T pfam04348 335 AASKMWNDGVRNPLVLVPQNDLGRRVVAAFNVRWQQLGGTDAAIRFYNQPADLTYRL 391 (535)
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHC
T ss_conf 999999848875699967983579999999999998449711134427777888860
No 233
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=82.73 E-value=3.4 Score=20.29 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=60.4
Q ss_pred CCEEEECCCCCCCCCCC-CCEEEEEECCCCCCCCCHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf 46089626753222246-73377641466566820010011222200018589999999999867982999958945899
Q gi|254780947|r 344 THKLVQMTAFNQQETAH-NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQ 422 (1187)
Q Consensus 344 ~~~ii~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~e 422 (1187)
+.++.-++.....+... ....++....-+...|..-...+-.-=.+-..++.+.+++|.+..+.|.+|+|=+.|-...|
T Consensus 370 Y~KLsGMTGTA~TE~~EF~~IYnL~Vv~vPTNrp~~R~D~~DlvY~te~~Kw~Av~~e~~~~h~~GqPvLvGT~svE~SE 449 (904)
T TIGR00963 370 YEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLPDLVYKTEEEKWKAVVDEIKEIHAKGQPVLVGTTSVEKSE 449 (904)
T ss_pred HHHHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 26544687756899998404577513551667723446777734647688999999999998746898777522177789
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9998677648873
Q gi|254780947|r 423 HLIHLIESHGFKK 435 (1187)
Q Consensus 423 RL~elL~e~gI~~ 435 (1187)
-|+.+|++++|+.
T Consensus 450 ~LS~lL~~~~I~H 462 (904)
T TIGR00963 450 LLSKLLKERGIPH 462 (904)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999998578981
No 234
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=82.12 E-value=3.5 Score=20.12 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=20.9
Q ss_pred HHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 9998679-8299995894589999986776488
Q gi|254780947|r 402 AQQAQKG-IKTIISASSQGALQHLIHLIESHGF 433 (1187)
Q Consensus 402 ~~~~k~g-~rViI~a~s~~~~eRL~elL~e~gI 433 (1187)
-...+.| .+|.|+..|..++++|.+.+.+.+.
T Consensus 143 ~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~ 175 (283)
T COG0169 143 FALAEAGAKRITVVNRTRERAEELADLFGELGA 175 (283)
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999986998799995888999999998645056
No 235
>KOG0730 consensus
Probab=82.10 E-value=3.5 Score=20.12 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 99876059885414431665432489999
Q gi|254780947|r 636 AVIQDLSSGRLMDRLICGDVGFGKTEIAL 664 (1187)
Q Consensus 636 eV~~Dmes~~PMDRLiCGDVGfGKTEVA~ 664 (1187)
|...+|-...|--=|..|-=|-|||=+|=
T Consensus 458 e~F~r~Gi~ppkGVLlyGPPGC~KT~lAk 486 (693)
T KOG0730 458 EKFARFGISPPKGVLLYGPPGCGKTLLAK 486 (693)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 99987257887547777899862478999
No 236
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=81.92 E-value=3.3 Score=20.35 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=12.1
Q ss_pred HHHHH-HHHHCCCCEEEEEC
Q ss_conf 99999-99862998999929
Q gi|254780947|r 29 GFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 29 allla-~l~~~~rpilvI~~ 47 (1187)
.+.+| .+++.++.+++|-+
T Consensus 16 G~~AA~~aa~~G~kValiE~ 35 (475)
T PRK06327 16 GYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred HHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999978991999972
No 237
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=81.89 E-value=2.6 Score=21.11 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98854144316654324899999998751127549998
Q gi|254780947|r 643 SGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 643 s~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavl 680 (1187)
..+-|=-+-||| |-|||--||=-|+.|+-.|+.|+++
T Consensus 20 ~~kGli~VytG~-GKGKTTAAlGlalRA~G~G~rV~iv 56 (190)
T PRK05986 20 EEKGLLIVHTGN-GKGKSTAAFGMALRAVGHGKKVGVV 56 (190)
T ss_pred CCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 468679998069-9871889999999983699889999
No 238
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.64 E-value=1.9 Score=22.13 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=43.3
Q ss_pred EEEEECHHHCCC-CHHHHHH---------HHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 667625023588-6045532---------21035676736999966888889889999999997
Q gi|254780947|r 907 TMIVQRADMFGL-AQLYQLR---------GRVGRSKIASFALFLLPENRPLTAAAQKRLRILQS 960 (1187)
Q Consensus 907 Tiii~~ad~~GL-aqlyQlr---------GRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~ 960 (1187)
|++|.+-|+-|. ++.=.+= =+|||..+-++||+++.-+..++++..++|+++..
T Consensus 1 TL~i~~~D~PG~Ig~i~~~L~~~~INIa~m~v~R~~~g~~A~~ii~~D~~v~~~~l~~i~~~~~ 64 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPN 64 (71)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9899944869919999999986596803618751589978999999289999999999975999
No 239
>PRK10017 putative pyruvyl transferase; Provisional
Probab=81.52 E-value=2.4 Score=21.34 Aligned_cols=112 Identities=11% Similarity=0.139 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-------H---HHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 9999999999867982999958945-------8---99999867764887332345224552046684799981044687
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASSQG-------A---LQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGF 464 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s~~-------~---~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF 464 (1187)
..+.+-+..+..+||.|++.....+ - +..+.+.+.. +..+.++..+ |
T Consensus 260 ~a~a~~~d~l~~~G~~Vv~lp~~~~i~~~~~dD~~~~~~i~~~m~~-------------------~~~~~il~~~----~ 316 (426)
T PRK10017 260 KAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISD-------------------PARYHVVMDE----L 316 (426)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC-------------------CCCEEEECCC----C
T ss_conf 9999999999977987999605668777780259999999997268-------------------7636983899----9
Q ss_pred CC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 46-65688712001373111221222222211012244403235112035542331123101456666635999986998
Q gi|254780947|r 465 ET-KHMILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNA 543 (1187)
Q Consensus 465 ~~-~kl~vITE~EIFG~k~~~r~~rkk~~~~~~i~dl~eL~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~D 543 (1187)
.. +-..+|++-|+|=-- | -++ .|. .+.-|=++|=..|- .+..|+-+.- |...=++-|++-+.|
T Consensus 317 ~~~E~~~ii~~~dl~IG~-------R--LHs-lIf---A~~~gvP~i~IsYd-~K~~g~~~~l--Gl~~~~~di~~~~~~ 380 (426)
T PRK10017 317 NDLEMGKILGACELTVGT-------R--LHS-AII---SMNFATPAIAINYE-HKSAGIMQQL--GLPEMAIDIRHLLDG 380 (426)
T ss_pred CHHHHHHHHHHCHHHHHH-------H--HHH-HHH---HHHCCCCEEEEEEC-HHHHHHHHHC--CCCHHEECHHHCCCH
T ss_conf 989999999739229988-------8--999-999---99759996984022-8789999975--993003037766927
Q ss_pred EE
Q ss_conf 79
Q gi|254780947|r 544 KL 545 (1187)
Q Consensus 544 kL 545 (1187)
.|
T Consensus 381 ~l 382 (426)
T PRK10017 381 SL 382 (426)
T ss_pred HH
T ss_conf 89
No 240
>TIGR01455 glmM phosphoglucosamine mutase; InterPro: IPR006352 This family describes GlmM, phosphoglucosamine mutase, also designated MrsA and YhbF in Escherichia coli , UreC in Helicobacter pylori , and femR315 or FemD in Staphlococcus aureus . It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides..
Probab=80.82 E-value=0.43 Score=27.20 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=39.0
Q ss_pred EEEEECHHHHHCCCCCHHHHHCC-E-------------EEEECCCCCCHHHHHHHHHHCCC----------EECCCCCCC
Q ss_conf 69995667852369986688515-4-------------89940974199999999998288----------455452178
Q gi|254780947|r 109 IIVLTTVSAVMCRSVNIMSIKDY-K-------------LSIQSKDQIDMAKVIEKLETNGF----------QRVNAVYKV 164 (1187)
Q Consensus 109 ~IIVtt~~ALlqklpp~~~l~~~-~-------------l~L~vGd~id~~~L~~~Lv~~GY----------~Rv~~Ve~~ 164 (1187)
.||+=++....+++.|. .|.+. - ++-.+|.. .++.|.+.=.+.+| -|+=+|++.
T Consensus 179 k~VlDCAnGAay~~AP~-~F~~LGAeViAi~~~PdG~NIN~~cGST-H~~~Lq~~V~E~~AdLGiAfDGDaDR~~~VD~~ 256 (450)
T TIGR01455 179 KVVLDCANGAAYKVAPK-VFRELGAEVIAIGVEPDGLNINDGCGST-HLEALQKAVRESGADLGIAFDGDADRVLAVDEN 256 (450)
T ss_pred EEEEECCCCHHHHHHHH-HHHHCCCEEEEECCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCCEEECCCCCEEEEECCC
T ss_conf 68764104236899999-9997198699980688863224456867-778899884020344010012884528988066
Q ss_pred CE
Q ss_conf 31
Q gi|254780947|r 165 GE 166 (1187)
Q Consensus 165 GE 166 (1187)
|.
T Consensus 257 G~ 258 (450)
T TIGR01455 257 GD 258 (450)
T ss_pred CC
T ss_conf 59
No 241
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=80.82 E-value=3.9 Score=19.80 Aligned_cols=12 Identities=0% Similarity=0.066 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999984
Q gi|254780947|r 89 VTRRLSCISNLV 100 (1187)
Q Consensus 89 ~~eRl~~L~~L~ 100 (1187)
.++|...++++-
T Consensus 76 ~a~rY~~~r~~r 87 (306)
T PRK04220 76 IAEKYLLWRRIR 87 (306)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999985
No 242
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=80.55 E-value=4 Score=19.73 Aligned_cols=11 Identities=45% Similarity=1.008 Sum_probs=5.2
Q ss_pred ECCEEEEECCC
Q ss_conf 57475730698
Q gi|254780947|r 170 RGGILDVYEPT 180 (1187)
Q Consensus 170 RGgIIDIFp~~ 180 (1187)
||-|++||-|-
T Consensus 59 ~g~ItEiyG~~ 69 (279)
T COG0468 59 RGRITEIYGPE 69 (279)
T ss_pred CCEEEEEECCC
T ss_conf 53589984688
No 243
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=80.45 E-value=2.3 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=17.1
Q ss_pred EEECCCCCCHHHHHHHHHHH----CCCCEEEEECC
Q ss_conf 89803765227999999986----29989999299
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIAR----LGLSLVYICSD 48 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~----~~rpilvI~~d 48 (1187)
|-++|-+||+|+.++..|.+ .+.++++|.-|
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89989897789999999999984648853999546
No 244
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.43 E-value=2.2 Score=21.65 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 678989984888887448999999987605
Q gi|254780947|r 613 DLYSQFIKRFPHVETEDQEKAIDAVIQDLS 642 (1187)
Q Consensus 613 ~~~~eFe~~FpyeET~DQ~~AI~eV~~Dme 642 (1187)
--|..|+..|-|-.-+|| +-|+=|..||.
T Consensus 589 l~qnnf~l~flypdeed~-s~idlihrD~s 617 (660)
T COG3972 589 LRQNNFMLVFLYPDEEDI-SVIDLIHRDAS 617 (660)
T ss_pred HHHHCCCCCCCCCCHHHH-HHHHHHHHCCC
T ss_conf 875064112468875665-54123120478
No 245
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.36 E-value=2.7 Score=21.06 Aligned_cols=46 Identities=28% Similarity=0.587 Sum_probs=37.3
Q ss_pred CCCCCCCEEEECCCCCCHHHHHH-HHHHH-----HHCCCCEEEEEECHHHHHHH
Q ss_conf 59885414431665432489999-99987-----51127549998243665558
Q gi|254780947|r 642 SSGRLMDRLICGDVGFGKTEIAL-RAAFI-----AVMNGLQVAVIAPTTLLVRQ 689 (1187)
Q Consensus 642 es~~PMDRLiCGDVGfGKTEVA~-RAafk-----av~~gkQvavlvPTTiLa~Q 689 (1187)
|+.+|| .|-|-.|-|||-||+ |-||. -+.+++||.||.|.-+++.=
T Consensus 224 ek~~il--VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleY 275 (747)
T COG3973 224 EKNKIL--VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEY 275 (747)
T ss_pred CCCCEE--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHH
T ss_conf 578748--9955888871358899999998535662466865998283899999
No 246
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=79.44 E-value=4.3 Score=19.48 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=10.8
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98999929989999999999985799809
Q gi|254780947|r 40 LSLVYICSDERILINLKKILTLVVPDIRV 68 (1187)
Q Consensus 40 rpilvI~~d~~~A~~l~~dL~~f~~~~~V 68 (1187)
.++.++-.++..++++.+.++.-.|+.+|
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~yp~l~i 75 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRARYPGLKI 75 (171)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEE
T ss_conf 74999808989999999999978899379
No 247
>KOG0672 consensus
Probab=79.35 E-value=1 Score=24.33 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCC-CEEEECCCCCCH
Q ss_conf 88744899999998760598854-144316654324
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSGRLM-DRLICGDVGFGK 659 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~~PM-DRLiCGDVGfGK 659 (1187)
--|.-|+.++.+..--..--+|- -+|||||+|-|-
T Consensus 155 p~T~~hl~~l~~~~~~~~~i~pieK~licGDiGlG~ 190 (218)
T KOG0672 155 PMTKKHLTSLKEEYPGITVIKPIEKVLICGDIGLGG 190 (218)
T ss_pred CCHHHHHHHHHHHCCCCEEECCHHEEEECCCCCCCC
T ss_conf 104999999987547848965621067515647531
No 248
>PRK08903 hypothetical protein; Validated
Probab=79.20 E-value=4.3 Score=19.43 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=86.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 989984888887448999999987605988541-4431665432489999999875112754999824366555899999
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMD-RLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMD-RLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf 694 (1187)
..|++ | ...+ =..|+..+++-...+.+.. =.|||+.|-|||-..-=.+-.+-..|+.+.++-. + .+
T Consensus 15 ~tfdn-F--v~g~-n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~-----~----~~ 81 (227)
T PRK08903 15 PTFDN-F--IAGE-NAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDP-----A----SP 81 (227)
T ss_pred CCHHC-C--CCCC-HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC-----C----CC
T ss_conf 76431-5--5777-599999999887438878669998999998889999999999806997499651-----1----04
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHH----HHC
Q ss_conf 9860678983354106663025677775312257608985206542785202365699722233008889988----631
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEAL----KET 770 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~l----k~~ 770 (1187)
.+.|... ....+|+||.=|.+.-...+.+ -.+
T Consensus 82 ~~~~~~~--------------------------------------------~~~d~l~iDDi~~i~~~~q~~lF~l~N~~ 117 (227)
T PRK08903 82 LLAFDFD--------------------------------------------PRAELYAVDDVERLDDAQQIALFNLFNRV 117 (227)
T ss_pred HHHHHHH--------------------------------------------HCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 5777420--------------------------------------------01898999641148956999999999999
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHHCCCCC-CEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 67884-89995353408899997122254-1220157887753799985797898999998987188
Q gi|254780947|r 771 HTGVH-VLTLSATPIPRTLQLAITGVREL-SLISMPPINRIACRTSISIFDPLVVRETLMREYYRGG 835 (1187)
Q Consensus 771 ~~~vd-vLtlsATPIPRTL~msl~g~rd~-S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgG 835 (1187)
+.+-. +|-+|+..=|..|.+. -|| |-+. .-....+.+-|++..+.++.+-..+-|
T Consensus 118 ~~~~~~~ll~s~~~~p~~l~~~----~DL~SRl~------~gl~~~i~~pdde~~~~iL~~~a~~rg 174 (227)
T PRK08903 118 RAHGKTALLVAGPAAPLALDVR----EDLRTRLG------WGLVYEVKPLSDEDKIAALKAAAAERG 174 (227)
T ss_pred HHCCCCEEEECCCCCHHHCCCC----HHHHHHHH------CCCEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 9729948997189971201200----89999993------897389979799999999999999629
No 249
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=79.05 E-value=4.4 Score=19.40 Aligned_cols=129 Identities=10% Similarity=0.102 Sum_probs=74.1
Q ss_pred CCEEEECCCCCCHHHHHHHHH----HHC-CCCEEEEECCHHHHHHHHHHHHHHCCCC------EEEECCCCCCCCHHCCC
Q ss_conf 860898037652279999999----862-9989999299899999999999857998------09985722467010048
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEI----ARL-GLSLVYICSDERILINLKKILTLVVPDI------RVIIFPAWDCLPYDRVS 83 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l----~~~-~rpilvI~~d~~~A~~l~~dL~~f~~~~------~V~~FP~~E~LPYd~~s 83 (1187)
++.+.+.|-+|++|+.+..++ ++. +.+.++|+=+ +...++.+.++.|..+. .-+.|.+....|-+...
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~-E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~ 102 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFE-ESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEE 102 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 977999838999999999999999988559978999857-9999999999984998689732683899961567431113
Q ss_pred C---CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCC
Q ss_conf 9---9899999999999984124468876999566785236998668851548994097419999999999828845545
Q gi|254780947|r 84 P---SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNA 160 (1187)
Q Consensus 84 p---~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~ 160 (1187)
+ +-+-.-+|+. ..+. ..+...|||-|+.++......+..+.+.. -.|..+|..+|=+-.-+
T Consensus 103 ~~~~dL~~l~~~I~---~~v~--~~~~~RvViDSlt~l~~~~~~~~~~R~~l-----------~~L~~~l~~~g~T~llt 166 (501)
T PRK09302 103 AGEYDLSALIERIE---YAIR--KIKAKRVVIDSIEALFQQYDNPAVVRREL-----------FRLFAWLKQKGVTAVMT 166 (501)
T ss_pred CCCCCHHHHHHHHH---HHHH--HHCCCEEEECCHHHHHHHCCCHHHHHHHH-----------HHHHHHHHHCCCEEEEE
T ss_conf 34476899999999---9999--71999999999789987635878999999-----------99999998779779998
No 250
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=78.95 E-value=4.4 Score=19.37 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEECCCCCCHHHHHHHHHHHC-C-CCEEEEECC
Q ss_conf 898037652279999999862-9-989999299
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIARL-G-LSLVYICSD 48 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~~-~-rpilvI~~d 48 (1187)
|-++|.+||+|+-++..|++. + ..+++|.-|
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D 34 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD 34 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 898899988599999999998099985899788
No 251
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.76 E-value=4.5 Score=19.33 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=48.7
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHH-HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 87651488608980376522799999-998629989999299899999999999857998099857
Q gi|254780947|r 8 ERISEKYCKKITLSPVIDGTEGFILA-EIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 8 ~~~~~k~~~~i~l~Gl~gs~~allla-~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
+++.+-.++-+.++|...+ -.+.+| +|++.+..+++.|.|...+++..+++..-.++..|.+++
T Consensus 9 ~~ipDL~GK~~lITGa~sG-IG~~~A~~La~~ga~Vil~~R~~~k~~~a~~~i~~~~~~~~i~~~~ 73 (306)
T PRK06197 9 ADIPDQSGRVAVVTGANTG-LGYETAAALAAKGAHVVLAVRNLDKGNAAAARITAAHPGADVTLQE 73 (306)
T ss_pred HHCCCCCCCEEEECCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 5688989999999168959-9999999999784989999798999999999999768998579997
No 252
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=78.52 E-value=4.5 Score=19.28 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=21.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-----HCCCCEEEEECC
Q ss_conf 88608980376522799999998-----629989999299
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIA-----RLGLSLVYICSD 48 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~-----~~~rpilvI~~d 48 (1187)
.+.=+.++|-+|.+|+.++.+++ +++.++++++.-
T Consensus 12 ~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9818999968999999999999999999779959999333
No 253
>KOG2383 consensus
Probab=78.50 E-value=4.5 Score=19.28 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 858999999999986798299995894589999986776488
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF 433 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI 433 (1187)
.+...|+.-|....+++.++++++.+. +.+++...+.
T Consensus 371 ~~~rRFITliD~lYd~~~rlv~sa~~p-----~~~Lf~~~~~ 407 (467)
T KOG2383 371 DQARRFITLIDALYDNHVRLVCSAATP-----LEELFQFTGH 407 (467)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCC-----HHHHHCCCCC
T ss_conf 877678789888863572389647887-----8987445675
No 254
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=78.42 E-value=2.6 Score=21.09 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHCCCE---EEEEECCHHH-HHHHHHHHHHCCCCCC
Q ss_conf 8589999999999867982---9999589458-9999986776488733
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIK---TIISASSQGA-LQHLIHLIESHGFKKI 436 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~r---ViI~a~s~~~-~eRL~elL~e~gI~~~ 436 (1187)
-.++.++.+|+....+|+| +.|+....+. .--+..++..++|+..
T Consensus 308 eEiEgvAr~Irq~i~eg~rYkDiaIL~gD~~aYe~~l~~If~~y~IP~f 356 (1108)
T COG3857 308 EEIEGVAREIRQKIREGYRYKDIAILLGDPAAYELTLKEIFKLYEIPFF 356 (1108)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999999998614875120433317868899999999987088734
No 255
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.19 E-value=4.6 Score=19.21 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=12.4
Q ss_pred HHHHHH-HHHHCCCCEEEEEC
Q ss_conf 799999-99862998999929
Q gi|254780947|r 28 EGFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 28 ~allla-~l~~~~rpilvI~~ 47 (1187)
-.+.+| .+++.++.+++|-.
T Consensus 15 aG~~aA~~aa~~G~kV~liE~ 35 (462)
T PRK06416 15 GGYVAAIRAAQLGLKVAIVEK 35 (462)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999968993999967
No 256
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=78.18 E-value=4.1 Score=19.61 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=4.8
Q ss_pred HHHHHHHHCCCE
Q ss_conf 999999982884
Q gi|254780947|r 145 KVIEKLETNGFQ 156 (1187)
Q Consensus 145 ~L~~~Lv~~GY~ 156 (1187)
.|++.|.+.||.
T Consensus 70 ~la~~l~~~g~~ 81 (334)
T PRK00652 70 WLAEQLQARGVK 81 (334)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999976993
No 257
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=77.87 E-value=4.7 Score=19.15 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=21.5
Q ss_pred EEECCCCCCHHHHHHHH-H----HHCCCCEEEEECCHHHHHH-HHHHHHH
Q ss_conf 89803765227999999-9----8629989999299899999-9999998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE-I----ARLGLSLVYICSDERILIN-LKKILTL 61 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~-l----~~~~rpilvI~~d~~~A~~-l~~dL~~ 61 (1187)
..+.|-.||+|+..+|. + .+.+...+++-+....+.+ .++++..
T Consensus 5 ~v~~GGrgsgKS~~~a~~~i~~~~~~~~~~l~~r~~~~slr~sv~~~~~~ 54 (387)
T pfam04466 5 KVAKGGRGSGKSYHIALKLVLKLLMHPRTNLVIREVKNTIEDSVFTQLQE 54 (387)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 99990888679999999999999878986999975568899999999999
No 258
>PRK10416 cell division protein FtsY; Provisional
Probab=77.66 E-value=4.8 Score=19.10 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC-----CC------------------CCCHH
Q ss_conf 34899999999999999999999999887401567787846789899848-----88------------------88744
Q gi|254780947|r 573 SAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRF-----PH------------------VETED 629 (1187)
Q Consensus 573 ~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~g~~f~~d~~~~~eFe~~F-----py------------------eET~D 629 (1187)
+=|+|-|+-..|.-..+...+..|...| ..|.+++.++|+.. .. ...++
T Consensus 196 g~f~rlk~gL~kt~~~l~~~~~~lf~~k--------kiD~~~~eeLEe~Li~aDvGv~tt~~ii~~l~~~~~~~~~~~~~ 267 (499)
T PRK10416 196 GFFARLKRSLLKTKENLGSGFISLFRGK--------KIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAE 267 (499)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 5899999899999999999999986689--------88889999999999972059999999999999999864799999
Q ss_pred HHH-HHHHHHHH----------CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHH--HHHHHHHHH
Q ss_conf 899-99999876----------05988541443166543248999999987511275499982436655--589999998
Q gi|254780947|r 630 QEK-AIDAVIQD----------LSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLV--RQHFRLFSE 696 (1187)
Q Consensus 630 Q~~-AI~eV~~D----------mes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa--~QH~~tf~~ 696 (1187)
.++ .+.+.+.+ +...+|.==|+||==|-|||--+-.=|++--..||.|.+.+--|-=| -...+...+
T Consensus 268 ~l~~~l~~~~~~il~~~~~~l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~ 347 (499)
T PRK10416 268 ALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ 347 (499)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 99999999999987310446656899987999974787878989999999999779953788406675689999999842
Q ss_pred HHCCCCCCEEEECCCCCCHH---HHHHHHHHCCCCCEEEE
Q ss_conf 60678983354106663025---67777531225760898
Q gi|254780947|r 697 RFQGFSVRIASISRFVQTKE---AALHKKSITEGQVDIVI 733 (1187)
Q Consensus 697 Rf~~~pv~i~~lsRf~~~~e---~~~i~~~l~~G~idivi 733 (1187)
| +.|.+++.-....- ....++..++..+|+||
T Consensus 348 r-----~~v~vi~~~~g~Dpa~V~~dai~~a~~~~~Dvvi 382 (499)
T PRK10416 348 R-----NNIPVIAQHTGADSASVIFDAIQAAKARNVDVLI 382 (499)
T ss_pred C-----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 4-----5736983689999799999999999972999899
No 259
>PRK05642 DNA replication initiation factor; Validated
Probab=77.43 E-value=4.8 Score=19.06 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCEEEEECHHHHHHHHH-H-----HHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCH
Q ss_conf 365699722233008889-9-----8863167884899953534088999971222541220157887753799985797
Q gi|254780947|r 747 NLGLIIIDEEQHFGVKHK-E-----ALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDP 820 (1187)
Q Consensus 747 ~LgLliiDEEqrFGV~~K-e-----~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~ 820 (1187)
...+|+||-=|..-=+++ | -+-.++.+=--|-+|++-=|.-|...+--+| |-+.. -....+.+-|+
T Consensus 97 ~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l~DL~--SRl~~------~~~~~i~~l~d 168 (234)
T PRK05642 97 QYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKLPDLK--SRLTL------ALVFQMRGLSD 168 (234)
T ss_pred HCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHH--HHHHC------CCEEEECCCCH
T ss_conf 27989893645546885999999999999998399599957879555230016799--99957------81275148998
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 898999998987188
Q gi|254780947|r 821 LVVRETLMREYYRGG 835 (1187)
Q Consensus 821 ~~i~~ai~rEl~RgG 835 (1187)
+....++.+...+-|
T Consensus 169 ~~~~~iL~~~a~~rg 183 (234)
T PRK05642 169 EDKLRALQLRASRRG 183 (234)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999977546
No 260
>PRK06116 glutathione reductase; Validated
Probab=77.24 E-value=4.9 Score=19.02 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=11.6
Q ss_pred HHHHH-HHHHCCCCEEEEEC
Q ss_conf 99999-99862998999929
Q gi|254780947|r 29 GFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 29 allla-~l~~~~rpilvI~~ 47 (1187)
.+.+| .+++.++.+++|-.
T Consensus 16 G~~aA~~aa~~G~kV~liE~ 35 (450)
T PRK06116 16 GIASANRAAMYGAKVALIEA 35 (450)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999968796999937
No 261
>CHL00176 ftsH cell division protein; Validated
Probab=77.02 E-value=5 Score=18.98 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=8.9
Q ss_pred CCCCCCEEEECCCCCCHHHHH
Q ss_conf 988541443166543248999
Q gi|254780947|r 643 SGRLMDRLICGDVGFGKTEIA 663 (1187)
Q Consensus 643 s~~PMDRLiCGDVGfGKTEVA 663 (1187)
.--|--=|+||-=|-|||=.|
T Consensus 207 ak~PkGvLL~GpPGTGKTlLA 227 (631)
T CHL00176 207 AKIPKGVLLVGPPGTGKTLLA 227 (631)
T ss_pred CCCCCEEEEECCCCCCHHHHH
T ss_conf 968965898898998788999
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.51 E-value=5.1 Score=18.88 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-------EEE--ECCCCCCHHHHHHHHHHHHHC-C-CCEEEEEECHH--HHHHHHHHHH
Q ss_conf 448999999987605988541-------443--166543248999999987511-2-75499982436--6555899999
Q gi|254780947|r 628 EDQEKAIDAVIQDLSSGRLMD-------RLI--CGDVGFGKTEIALRAAFIAVM-N-GLQVAVIAPTT--LLVRQHFRLF 694 (1187)
Q Consensus 628 ~DQ~~AI~eV~~Dmes~~PMD-------RLi--CGDVGfGKTEVA~RAafkav~-~-gkQvavlvPTT--iLa~QH~~tf 694 (1187)
.|..++..+++..+-...|.. |.+ +|=-|-|||=-+-+=|-..+. . ++.||++.=-| |=|.+..+||
T Consensus 167 ~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~y 246 (282)
T TIGR03499 167 ESAWRWLREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTY 246 (282)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 89999999999964777887655445672799977888757889999999999973899679998077767899999999
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 98606789833541066630256777753122576089852
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGT 735 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT 735 (1187)
.+-+ +.|+.|. .++.+-++.+..+++..+ |+|-|
T Consensus 247 a~il-~vp~~vv-----~~~~~l~~~l~~~~~~d~-IlIDT 280 (282)
T TIGR03499 247 AKIL-GVPVKVA-----RDPKELAKALERLRDKDL-ILIDT 280 (282)
T ss_pred HHHH-CCEEEEE-----CCHHHHHHHHHHCCCCCE-EEEEC
T ss_conf 9995-9748993-----999999999986579899-99819
No 263
>PRK08084 DNA replication initiation factor; Provisional
Probab=76.34 E-value=5.2 Score=18.85 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=14.8
Q ss_pred EEECCCCCCHHHHHHHHHHHH-HCCCCEEEEE
Q ss_conf 431665432489999999875-1127549998
Q gi|254780947|r 650 LICGDVGFGKTEIALRAAFIA-VMNGLQVAVI 680 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAafka-v~~gkQvavl 680 (1187)
.|+|..|-|||-.. .|+... ...|++|.++
T Consensus 49 ~l~G~~G~GKTHLL-qA~~~~~~~~~~~~~yl 79 (235)
T PRK08084 49 YLWGREGAGRSHLL-HAACAELSQRGDAVGYV 79 (235)
T ss_pred EEECCCCCCHHHHH-HHHHHHHHCCCCCEEEE
T ss_conf 99899998889999-99999997079857998
No 264
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=76.03 E-value=5.2 Score=18.79 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=17.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-----HCCCCEEEEE
Q ss_conf 88608980376522799999998-----6299899992
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIA-----RLGLSLVYIC 46 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~-----~~~rpilvI~ 46 (1187)
.+.=+.++|-+|.+|+.++.+++ +.+.+++++.
T Consensus 29 ~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~S 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98089999689986999999999999997699089997
No 265
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=75.93 E-value=5.3 Score=18.77 Aligned_cols=53 Identities=17% Similarity=0.365 Sum_probs=29.1
Q ss_pred EEEEEECCC--CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 599982644--6928899999861654648886134674789999999963887579761
Q gi|254780947|r 836 QSFYVCPRL--SDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLST 893 (1187)
Q Consensus 836 Qvf~v~nrv--~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~T 893 (1187)
|.+|-...| .-.+..+++|+++-|+++|..-+...++..+++ |+. .+|+.+++
T Consensus 44 q~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~----~~~-~~DvVi~~ 98 (134)
T pfam00899 44 QILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERLTPENLEE----LLK-GADLVVDA 98 (134)
T ss_pred EEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH----CCC-CCCEEEEC
T ss_conf 24233646688107999999997789958999925679778764----264-48899999
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=75.92 E-value=5.3 Score=18.77 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=26.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4144316654324899999998751127549998
Q gi|254780947|r 647 MDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 647 MDRLiCGDVGfGKTEVA~RAafkav~~gkQvavl 680 (1187)
|=-+-||| |-|||--||=-|+.|+-.|+.|.++
T Consensus 4 li~vytG~-GKGKTTAAlG~alRA~G~G~rV~iv 36 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 79999579-9970899999999984499989999
No 267
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=75.28 E-value=4.1 Score=19.58 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCE
Q ss_conf 4692889999986165464888613467478999999996388757976102003633223326
Q gi|254780947|r 844 LSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANT 907 (1187)
Q Consensus 844 v~~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNT 907 (1187)
|.+-.-+++++++++.+..|.+---|-+-.|++.. ...+|+.|+||.+..-+|||--|-
T Consensus 11 iaTSt~v~~ki~~~l~e~gi~~~i~~~~i~e~~~~-----~~~~Dliv~tt~~~~~~~iPvi~g 69 (89)
T cd05566 11 VATSTVVASKVKELLKENGIDVKVEQCKIAEVPSL-----LDDADLIVSTTKVPEDYGIPVING 69 (89)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHC-----CCCCCEEEEECCCCCCCCCCEEEE
T ss_conf 03999999999999998699159999759998742-----799878999442688889878996
No 268
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=75.17 E-value=5.5 Score=18.63 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=48.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 4886089803765227999999986299899992998999999999998579980998572
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPA 73 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~ 73 (1187)
...+.+.++|.+++--.-++-.|++.+..+++|+.++....+++++|.--. ...|...|.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPA 63 (265)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHH-CCEEEEEEC
T ss_conf 778679997788648999999999779979999676999999999998730-862799977
No 269
>PRK05480 uridine kinase; Provisional
Probab=75.08 E-value=5.5 Score=18.61 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=21.9
Q ss_pred EEECCCCCCHHHHHHHHHHHC-C-CCEEEEECCH
Q ss_conf 898037652279999999862-9-9899992998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIARL-G-LSLVYICSDE 49 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~~-~-rpilvI~~d~ 49 (1187)
+-++|-+||+|+.++..|.+. + ..+.+|.-|.
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~ 42 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGDESIAVISQDS 42 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9998999778999999999980868759995544
No 270
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=74.66 E-value=5.6 Score=18.54 Aligned_cols=148 Identities=15% Similarity=0.221 Sum_probs=90.2
Q ss_pred CCCHHHHHHH-HHHHCCCCEEEEECCHHHHHHHHHHHHHHC--CCCEEEECCCC--C---------CCCHHCCCCCHHHH
Q ss_conf 6522799999-998629989999299899999999999857--99809985722--4---------67010048998999
Q gi|254780947|r 24 IDGTEGFILA-EIARLGLSLVYICSDERILINLKKILTLVV--PDIRVIIFPAW--D---------CLPYDRVSPSPYVV 89 (1187)
Q Consensus 24 ~gs~~allla-~l~~~~rpilvI~~d~~~A~~l~~dL~~f~--~~~~V~~FP~~--E---------~LPYd~~sp~~di~ 89 (1187)
.|++|+|+=- +...-.|.+||+|.+.-..+||..-++.|. .+..|+-|-+- | +..|..+.-+..-.
T Consensus 297 CGAGKsLVGvTAACTvkKs~lVLctS~VSV~QW~~QFk~WSti~d~~IcrFTSD~Ke~~~~~~gv~vsTYsMva~t~kRS 376 (756)
T TIGR00603 297 CGAGKSLVGVTAACTVKKSVLVLCTSAVSVEQWKQQFKLWSTIDDSQICRFTSDAKEKFHGEAGVVVSTYSMVAHTGKRS 376 (756)
T ss_pred CCCCCCHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCH
T ss_conf 78883112254420231007897267100889998875226887355110252135762665335887330002475431
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEE-----ECHHHHHCCCCCHHHHHCCEE------EEECCCCC-CHHHH-------HHH-
Q ss_conf 99999999984124468876999-----566785236998668851548------99409741-99999-------999-
Q gi|254780947|r 90 TRRLSCISNLVSFNSSKETIIVL-----TTVSAVMCRSVNIMSIKDYKL------SIQSKDQI-DMAKV-------IEK- 149 (1187)
Q Consensus 90 ~eRl~~L~~L~~~~~~~~~~IIV-----tt~~ALlqklpp~~~l~~~~l------~L~vGd~i-d~~~L-------~~~- 149 (1187)
.+=-+++..|. +.+.++|| |=+.+.++|+. ...+.|+- -++-.|.| |++=| ++|
T Consensus 377 ~es~k~m~~l~----~rEWGl~~LDEVHvvPA~mFRrVl--t~~~aHcKLGLTATLvREDdKI~DLNFLIGPKLYEANWl 450 (756)
T TIGR00603 377 YESEKVMEWLT----NREWGLILLDEVHVVPAAMFRRVL--TIVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWL 450 (756)
T ss_pred HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCCHH--HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88999999970----687317986110103500166010--144332001432110011143031221357213453269
Q ss_pred -HHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCEE
Q ss_conf -998288455452178316545747573069888726886348722
Q gi|254780947|r 150 -LETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTI 194 (1187)
Q Consensus 150 -Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeI 194 (1187)
|...||--.=++.| ||.|-.. |||-.-+
T Consensus 451 eL~~~GfIA~VqCAE------------VWCPMt~-----EFY~EYL 479 (756)
T TIGR00603 451 ELQKKGFIANVQCAE------------VWCPMTP-----EFYREYL 479 (756)
T ss_pred HHHCCCEEEEEEECC------------CCCCCCH-----HHHHHHH
T ss_conf 882088368874121------------0178877-----7899998
No 271
>PRK04195 replication factor C large subunit; Provisional
Probab=74.50 E-value=5.7 Score=18.51 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=31.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCEEEE-ECCHHHHHHHHHHHHH
Q ss_conf 60898037652279999999862-9989999-2998999999999998
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARL-GLSLVYI-CSDERILINLKKILTL 61 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~-~rpilvI-~~d~~~A~~l~~dL~~ 61 (1187)
+.+.|.|-+|.+|+-++..+++. +-.++=+ +.|.+....+..-+..
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I~~~i~~ 88 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVIERVAGE 88 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 469988939987999999999984998599771011478999999998
No 272
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=74.27 E-value=5.6 Score=18.55 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 1858999999999986798299995894589999986776488733
Q gi|254780947|r 391 GGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 391 ~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~ 436 (1187)
..-+++|+.++..+.++|.+|.+..+|...-+...+.|.+.|+...
T Consensus 120 r~vidrFldelp~~lk~gGrv~l~~SSl~~e~~~~~kl~~~GF~~e 165 (183)
T TIGR00537 120 RKVIDRFLDELPEYLKEGGRVQLIQSSLSDEKDTLDKLDELGFKVE 165 (183)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 5788888765688870599899996066886889988761588479
No 273
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=73.96 E-value=3.7 Score=19.96 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=4.6
Q ss_pred CEEEEECCCC
Q ss_conf 5688712001
Q gi|254780947|r 468 HMILVTETDL 477 (1187)
Q Consensus 468 kl~vITE~EI 477 (1187)
++.||.--|+
T Consensus 140 dllvink~dl 149 (199)
T TIGR00101 140 DLLVINKIDL 149 (199)
T ss_pred HEEEEECCCC
T ss_conf 1224320012
No 274
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=73.81 E-value=5.9 Score=18.39 Aligned_cols=118 Identities=11% Similarity=0.107 Sum_probs=54.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH----HCC--CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHH
Q ss_conf 608980376522799999998----629--98999929989999999999985799809985722467010048998999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA----RLG--LSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVV 89 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~----~~~--rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~ 89 (1187)
.-+.+.|-.|++|+|++.+.+ +.+ +.++++-|.- ++ -+++-|+-++.. .-+-+|-. |-.|..
T Consensus 20 ~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp~v-~~---g~~iGfLPG~~~-eK~~p~~~-------p~~d~l 87 (205)
T pfam02562 20 DIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRPAV-EA---GEKLGFLPGDLE-EKVDPYLR-------PLYDAL 87 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-CC---CCCCCCCCCCHH-HHHHHHHH-------HHHHHH
T ss_conf 8079989998609999999999999718943799975771-25---775455889789-99999999-------999999
Q ss_pred HHHH--HHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 9999--99999841244688769995667852369986688515489940974199999999998288
Q gi|254780947|r 90 TRRL--SCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGF 155 (1187)
Q Consensus 90 ~eRl--~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY 155 (1187)
.+.+ ..+..|.. +..|-+.++.-+--+ .|.+..+-+---|.+.++++...|+..|-
T Consensus 88 ~~~~~~~~~~~l~~-----~~~Ie~~pl~~iRGr-----Tf~n~~iIvDEaQN~t~~~lk~ilTRiG~ 145 (205)
T pfam02562 88 YDMLGAEKVEKLIE-----RGVIEIAPLAYMRGR-----TLNDAFIILDEAQNTTPEQMKMFLTRIGF 145 (205)
T ss_pred HHHHCHHHHHHHHH-----CCCEEECCHHHHCCC-----CCCCCEEEEECHHCCCHHHHHHHHHHCCC
T ss_conf 98728999999997-----597566146765547-----62568899972213999999999842179
No 275
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=73.80 E-value=5.9 Score=18.41 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=91.0
Q ss_pred CEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCH-HHHH
Q ss_conf 608980376522799999998----62998999929989999999999985799809985722467010048998-9999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSP-YVVT 90 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~-di~~ 90 (1187)
.-+.+.|+.||+++-.+|.|+ +.++.+++|+.|-.++... +.|+.+.....|-+|+... ..++ ++..
T Consensus 98 ~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~-eQL~~la~~~~v~~~~~~~-------~~dp~~i~~ 169 (433)
T PRK00771 98 QTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAY-EQLKQLCEKINVPFYGDPK-------EKDAVKIVK 169 (433)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHCCCCCCCCCC-------CCCHHHHHH
T ss_conf 58999737889789999999999997799467850678836899-9999999863887317889-------999999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHH------HC------CCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEEC
Q ss_conf 9999999984124468876999566785------23------69986688515489940974199999999998288455
Q gi|254780947|r 91 RRLSCISNLVSFNSSKETIIVLTTVSAV------MC------RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRV 158 (1187)
Q Consensus 91 eRl~~L~~L~~~~~~~~~~IIVtt~~AL------lq------klpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv 158 (1187)
.++.+.- +-..|||-|+.-+ +. ++..|+.. -..+.-..||.. .+.-..+=...+..-+
T Consensus 170 ---~a~~~~k-----~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~-llV~Da~~GQ~a-~~~a~~F~~~~~i~gv 239 (433)
T PRK00771 170 ---EGLEKLK-----KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEV-ILVIDATIGQQA-SEQAKAFKEAVGIGGI 239 (433)
T ss_pred ---HHHHHHC-----CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEE-EEEEECCCCHHH-HHHHHHHHHHCCCCEE
T ss_conf ---9999845-----69889997765210409999999999877579768-998654422678-9999999875388737
Q ss_pred CCCCCCCEEEEECCE-EEEECCCCCCCEEEECCCCEEEEEEEEECCCC
Q ss_conf 452178316545747-57306988872688634872210154513748
Q gi|254780947|r 159 NAVYKVGEYAVRGGI-LDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQ 205 (1187)
Q Consensus 159 ~~Ve~~GEFAvRGgI-IDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQ 205 (1187)
=.----| ..|||. +-+-. ....||.--=.|..+|.+..|+|+.=
T Consensus 240 IlTKlDg--darGGaaLSi~~-~t~~PI~FiG~GEk~~dle~F~p~r~ 284 (433)
T PRK00771 240 IITKLDG--TAKGGGALSAVA-ETGAPIKFIGTGETIDDLEPFDPKRF 284 (433)
T ss_pred EEECCCC--CCCCCHHHHHHH-HHCCCCEEEECCCCCCCCCCCCHHHH
T ss_conf 9972567--887305421898-87899568861787214886680889
No 276
>PRK05872 short chain dehydrogenase; Provisional
Probab=73.18 E-value=6.1 Score=18.28 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=50.3
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHH
Q ss_conf 14886089803765227999999986299899992998999999999998579980998572246701004899899999
Q gi|254780947|r 12 EKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTR 91 (1187)
Q Consensus 12 ~k~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~e 91 (1187)
+=.++.+.++|...+--.-++-.|++.+..++++..|+...+++.+++ ++ .+..++. |+ .+.+-+.+
T Consensus 6 ~L~gKvalITGassGIG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~~l----g~-~~~~~~~-DV-------td~~~v~~ 72 (296)
T PRK05872 6 SLDGKVVFVTGAARGVGAELARRLHARGAKVALVDLEEAELAALAAEL----GD-RVLTVVA-DV-------TDLAAMQA 72 (296)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH----CC-CEEEEEE-EC-------CCHHHHHH
T ss_conf 859987999271058999999999987998999989999999999983----88-7389998-27-------99999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHH
Q ss_conf 9999999841244688769995667
Q gi|254780947|r 92 RLSCISNLVSFNSSKETIIVLTTVS 116 (1187)
Q Consensus 92 Rl~~L~~L~~~~~~~~~~IIVtt~~ 116 (1187)
=+ ..... .-+...|+|..+-
T Consensus 73 ~v---~~i~~--~~G~iDiLVnNAG 92 (296)
T PRK05872 73 AA---EEAVE--RFGGIDVVVANAG 92 (296)
T ss_pred HH---HHHHH--HHCCCCEEEECCC
T ss_conf 99---99999--7199878765562
No 277
>PRK05875 short chain dehydrogenase; Provisional
Probab=72.35 E-value=6.4 Score=18.15 Aligned_cols=91 Identities=12% Similarity=0.055 Sum_probs=53.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC-EEEECCCCCCCCHHCCCCCHHHHHHH
Q ss_conf 88608980376522799999998629989999299899999999999857998-09985722467010048998999999
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDI-RVIIFPAWDCLPYDRVSPSPYVVTRR 92 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~-~V~~FP~~E~LPYd~~sp~~di~~eR 92 (1187)
.++.+.++|..++--.-++..|++.+..+++...++.......+++....++. .+.+++. |. .+.+-+.+-
T Consensus 6 ~gK~alVTGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~~~~~~v~~~~~-Dv-------s~~~~v~~~ 77 (277)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAALVAAGAAVMIVGRNPDKLAAAAEEIEALAGGAGAVRYEPA-DV-------TNEDEVARA 77 (277)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEC-CC-------CCHHHHHHH
T ss_conf 9998999488749999999999987998999979889999999999961278862899957-89-------999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEEECHHH
Q ss_conf 9999998412446887699956678
Q gi|254780947|r 93 LSCISNLVSFNSSKETIIVLTTVSA 117 (1187)
Q Consensus 93 l~~L~~L~~~~~~~~~~IIVtt~~A 117 (1187)
++ .... ..++..++|-++..
T Consensus 78 v~---~~~~--~~g~iD~LVnnAg~ 97 (277)
T PRK05875 78 VD---AATA--WHGRLHGVVHCAGG 97 (277)
T ss_pred HH---HHHH--HHCCCEEEEECCCC
T ss_conf 99---9999--84995399987813
No 278
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=72.14 E-value=6.4 Score=18.11 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHC-CCCEEE---EECCHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCHH
Q ss_conf 887651-48860898037652279999999862-998999---92998999999999998579-9809985722467010
Q gi|254780947|r 7 IERISE-KYCKKITLSPVIDGTEGFILAEIARL-GLSLVY---ICSDERILINLKKILTLVVP-DIRVIIFPAWDCLPYD 80 (1187)
Q Consensus 7 ~~~~~~-k~~~~i~l~Gl~gs~~allla~l~~~-~rpilv---I~~d~~~A~~l~~dL~~f~~-~~~V~~FP~~E~LPYd 80 (1187)
+.|+.+ ..-.+..+-|-+|++|+-++..+++. +..+.- ++.+.++.+...+.-+-+.. +...++|=+ |
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflD-E----- 112 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLD-E----- 112 (436)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-H-----
T ss_conf 8999964998605777899988889999998761776699515234679999999999998725883499872-2-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHH
Q ss_conf 048998999999999999841244688769995667852369986688515489940974199999999
Q gi|254780947|r 81 RVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEK 149 (1187)
Q Consensus 81 ~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~ 149 (1187)
.|.---++.-..|-.+- ++.-..|=+|.++=.--+-|.=.=....+.|+.=..=|+..++++
T Consensus 113 ---IHRfnK~QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 113 ---IHRFNKAQQDALLPHVE----NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred ---HHHCCHHHHHHHHHHHC----CCEEEEEECCCCCCCEEECHHHHHHHHEEEEECCCHHHHHHHHHH
T ss_conf ---53337445655103324----886899962678987140388861104156516998999999999
No 279
>KOG0391 consensus
Probab=72.13 E-value=6.4 Score=18.11 Aligned_cols=133 Identities=26% Similarity=0.281 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCC-----------------------------CEEEECCCE
Q ss_conf 928899999861654648886134674789999999963887-----------------------------579761020
Q gi|254780947|r 846 DLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQY-----------------------------DVLLSTSIV 896 (1187)
Q Consensus 846 ~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~-----------------------------dvLv~TtIi 896 (1187)
.++..|-.|++|--+-+=+..--||.. .| +|...|.+..+ --.++|-==
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtk-mL-DVLEqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391 1261 KLQTLAILLQQLKSEGHRVLIFTQMTK-ML-DVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred HHHHHHHHHHHHHHCCCEEEEHHHHHH-HH-HHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 599999999999855854885168899-99-9999998542568998448753889999999736787169999852678
Q ss_pred ECCCCCCCCCEEEEECHHHCCC--CHHHHHHHHCCCCCCCCEEEEEECCCC----CCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 0363322332667625023588--604553221035676736999966888----8898899999999972556524899
Q gi|254780947|r 897 ESGLDLPKANTMIVQRADMFGL--AQLYQLRGRVGRSKIASFALFLLPENR----PLTAAAQKRLRILQSLNTLGAGFQL 970 (1187)
Q Consensus 897 EsGlDip~aNTiii~~ad~~GL--aqlyQlrGRVGRs~~~ayayl~~~~~~----~l~~~a~kRL~ai~~~~~lGsGf~i 970 (1187)
-.||..-.|.|.|-+|.|.=-- ||------|+|+... -.-|=++.... .|.+.-+||+ |.+..-=|.+|.-
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQaQDrChRIGqtRd-VhIYRliSerTIEenILKkanqKr~--L~evaiqggdfTt 1415 (1958)
T KOG0391 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD-VHIYRLISERTIEENILKKANQKRM--LDEVAIQGGDFTT 1415 (1958)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEEEECCCHHHHHHHHHHHHHHH--HHHHHHCCCCCCH
T ss_conf 642013467458984588880132688988887457341-3788740334078999863227776--6666421588538
Q ss_pred HH-HHHHHCCCCCCCCC
Q ss_conf 99-99851163000461
Q gi|254780947|r 971 AS-YDLDIRGTGNLLGE 986 (1187)
Q Consensus 971 A~-~DleiRGaG~llG~ 986 (1187)
|- .-..|| +|++.
T Consensus 1416 affkQ~tir---dLfd~ 1429 (1958)
T KOG0391 1416 AFFKQRTIR---DLFDV 1429 (1958)
T ss_pred HHHHHHHHH---HHHCC
T ss_conf 887553599---98558
No 280
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=71.71 E-value=6.6 Score=18.04 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=11.6
Q ss_pred HHHHH-HHHHCCCCEEEEEC
Q ss_conf 99999-99862998999929
Q gi|254780947|r 29 GFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 29 allla-~l~~~~rpilvI~~ 47 (1187)
.+.+| .+++.+..+++|-.
T Consensus 16 G~~AA~~aa~~G~kv~liE~ 35 (464)
T PRK05976 16 GYVAAIRAGQLGLKTALVEK 35 (464)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999978992999978
No 281
>pfam03918 CcmH Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.
Probab=71.66 E-value=6.3 Score=18.20 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 8899999987508998999999999776248
Q gi|254780947|r 1043 NLRLSLYRRLGNITDHADISHFKEEMVDRFG 1073 (1187)
Q Consensus 1043 ~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG 1073 (1187)
++|-.+|++|..-+|++|+.+ .|.+|||
T Consensus 58 dmR~~i~~~i~~G~sd~eI~~---~~~~rYG 85 (145)
T pfam03918 58 DLRLEVREMLVEGKSDEEIID---YMVARYG 85 (145)
T ss_pred HHHHHHHHHHHCCCCHHHHHH---HHHHHCC
T ss_conf 999999999985999999999---9998638
No 282
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=71.64 E-value=1.8 Score=22.46 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=24.5
Q ss_pred CCEEEECCCC-CCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8608980376-5227999999-986299899992998999999999998
Q gi|254780947|r 15 CKKITLSPVI-DGTEGFILAE-IARLGLSLVYICSDERILINLKKILTL 61 (1187)
Q Consensus 15 ~~~i~l~Gl~-gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~ 61 (1187)
+++..+.|+. ..+-||-+|. +.+++.-+.+-..+++--.+...-.+.
T Consensus 6 GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~ 54 (259)
T COG0623 6 GKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEE 54 (259)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 8658999732662179999999997598799984358889999998764
No 283
>PRK05854 short chain dehydrogenase; Provisional
Probab=71.60 E-value=6.6 Score=18.03 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=47.4
Q ss_pred CCCCEEEECCCCCCHHHHHHH-HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 488608980376522799999-998629989999299899999999999857998099857
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILA-EIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla-~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
=.++.+.++|.. ++-.+.+| +|++.+..+++.|.|...++...++++.-.|+..|.+.+
T Consensus 12 L~GK~~vITGa~-sGIG~~~a~~La~~Ga~Vil~~R~~~k~~~a~~~i~~~~~~~~v~~~~ 71 (314)
T PRK05854 12 LSGKLAVVTGAS-SGLGFGLARRLAAAGADVILPVRNRAKGEAAVAAIRTAVPDAKLTIRA 71 (314)
T ss_pred CCCCEEEECCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999989990688-299999999999784989999799999999999999868998569996
No 284
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=71.40 E-value=6.4 Score=18.13 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 888999999875089989999999997762488
Q gi|254780947|r 1042 INLRLSLYRRLGNITDHADISHFKEEMVDRFGP 1074 (1187)
Q Consensus 1042 ~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~ 1074 (1187)
.++|-.+|+++.+-+|++|+. +.|.+|||+
T Consensus 60 ~dmR~~I~~~i~~G~sd~eI~---~~l~~RYG~ 89 (126)
T TIGR03147 60 YDLRHEVYSMVNEGKSNQQII---DFMTARFGD 89 (126)
T ss_pred HHHHHHHHHHHHCCCCHHHHH---HHHHHHCCC
T ss_conf 999999999998599989999---999997088
No 285
>PRK10646 putative ATPase; Provisional
Probab=71.39 E-value=2.7 Score=21.04 Aligned_cols=39 Identities=5% Similarity=0.186 Sum_probs=24.5
Q ss_pred EEEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 599998699879966675211110036788853234340
Q gi|254780947|r 534 CLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGG 572 (1187)
Q Consensus 534 yL~IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg 572 (1187)
...||.++.-.=++|-+.+..-=.|.+++...++.-.|.
T Consensus 104 i~lIEWpe~~~~~lP~~~l~I~i~~~~~~R~~~i~a~~~ 142 (153)
T PRK10646 104 ICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSS 142 (153)
T ss_pred EEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCH
T ss_conf 999989765101088476899999859984799998898
No 286
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=71.38 E-value=6.7 Score=17.99 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8532343403489999999999--9---99999999999988740156778
Q gi|254780947|r 564 TVTLDKLGGSAWKTRKANLKKR--L---EDLAQKLVDIAAKRAIHSVPPLM 609 (1187)
Q Consensus 564 ~p~L~kLGg~~W~k~K~Kakk~--v---~diA~eLl~lyA~R~~~~g~~f~ 609 (1187)
.+.|+-+-|.+|++.-.+.-.. + .-=|.+|.+...+-+...|.+|-
T Consensus 459 g~~l~d~~g~ef~~~y~~~~~~~~~~kr~i~A~~L~~~i~~~~~etG~P~i 509 (842)
T PRK12364 459 GYALEDYYGEEWEKRYWDCVNDSRISKRSIPIKDLVRLVLKSAVETGTPFT 509 (842)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCEE
T ss_conf 653676541799999999885465434055299999999999998689259
No 287
>PRK08219 short chain dehydrogenase; Provisional
Probab=71.00 E-value=6.8 Score=17.93 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=20.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 60898037652279999999862998999929989999999999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKIL 59 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL 59 (1187)
+-+.++|..++--.-++..|++ +..+++++.+...+.++.+++
T Consensus 4 KvalITGas~GIG~aia~~la~-~g~vv~~~r~~~~l~~l~~~~ 46 (226)
T PRK08219 4 PTALITGASRGIGAAIARALAR-THTLLLAGRPSERLDAVAARL 46 (226)
T ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHH
T ss_conf 9999928464999999999996-998999989889999999970
No 288
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=70.93 E-value=6.8 Score=17.92 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=18.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 886089803765227999999986
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIAR 37 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~ 37 (1187)
.++-+.|.|-.|-+++.+++.+..
T Consensus 31 ~~~lIfLCGSvGDGKShILs~~k~ 54 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILAENKR 54 (504)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 774899965888868999999889
No 289
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=70.91 E-value=3.3 Score=20.34 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999998677648
Q gi|254780947|r 421 LQHLIHLIESHG 432 (1187)
Q Consensus 421 ~eRL~elL~e~g 432 (1187)
.++|.+++..++
T Consensus 280 l~~l~~f~s~n~ 291 (335)
T cd01294 280 LDKLEAFASDNG 291 (335)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999984657
No 290
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=70.66 E-value=6.9 Score=17.88 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=63.8
Q ss_pred EEECCCCCCHHHHHHHH----HHH-CCC-CEEEEECCHHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCHHCCCCCHHHH
Q ss_conf 89803765227999999----986-299-8999929989999999999985799809985--722467010048998999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE----IAR-LGL-SLVYICSDERILINLKKILTLVVPDIRVIIF--PAWDCLPYDRVSPSPYVV 89 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~----l~~-~~r-pilvI~~d~~~A~~l~~dL~~f~~~~~V~~F--P~~E~LPYd~~sp~~di~ 89 (1187)
+-+.==+|++++++.-. |-+ .|- ..+||+|+..--+-.+...... . .+| -.++.-+|+.+..+..+.
T Consensus 77 iDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~--~---ehF~k~~Yent~~e~~i~~~~~~ 151 (985)
T COG3587 77 IDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKET--T---EHFFKSEYENTRLESYIYDEDIE 151 (985)
T ss_pred EEEEEECCCCCEEEHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHH--H---HHHHHHHCCCCCEEEEEECHHHH
T ss_conf 568983278843317999999999748455999935389874457778999--9---99865121573026897232778
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEEC---CCCCCHHHHHHHHHHCCCEECCCCCCCCE
Q ss_conf 999999999841244688769995667852369986688515489940---97419999999999828845545217831
Q gi|254780947|r 90 TRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQS---KDQIDMAKVIEKLETNGFQRVNAVYKVGE 166 (1187)
Q Consensus 90 ~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~v---Gd~id~~~L~~~Lv~~GY~Rv~~Ve~~GE 166 (1187)
.... ..++.|++++.+++|.-..-.....+.+.+....- |-.=..+ -|.. -+..-.|.+|--
T Consensus 152 ------~~~~---~~~~~~~vLl~~~~A~nk~~inan~iN~~s~~~~~~~~~~~spvd----~la~--~rPIvIvDEPh~ 216 (985)
T COG3587 152 ------KFKF---KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVD----ALAS--MRPIVIVDEPHR 216 (985)
T ss_pred ------HHHH---CCCCCCEEEEEEHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHH----HHHH--CCCEEEECCHHH
T ss_conf ------8750---147885599984133253321113316054400574200158778----9874--298799647100
Q ss_pred EEEE
Q ss_conf 6545
Q gi|254780947|r 167 YAVR 170 (1187)
Q Consensus 167 FAvR 170 (1187)
|.-+
T Consensus 217 f~~~ 220 (985)
T COG3587 217 FLGD 220 (985)
T ss_pred CCCC
T ss_conf 3541
No 291
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=70.49 E-value=3.6 Score=20.06 Aligned_cols=18 Identities=44% Similarity=0.495 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 999987511275499982
Q gi|254780947|r 664 LRAAFIAVMNGLQVAVIA 681 (1187)
Q Consensus 664 ~RAafkav~~gkQvavlv 681 (1187)
++|-..|+.+||||.|||
T Consensus 387 V~ALi~AA~nGKqVtvlV 404 (696)
T COG0855 387 VRALIDAAENGKQVTVLV 404 (696)
T ss_pred HHHHHHHHHCCCEEEEEE
T ss_conf 999999998098689999
No 292
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=70.16 E-value=7 Score=17.80 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=6.1
Q ss_pred EEEEECCHHHHHHHHHH
Q ss_conf 99995894589999986
Q gi|254780947|r 411 TIISASSQGALQHLIHL 427 (1187)
Q Consensus 411 ViI~a~s~~~~eRL~el 427 (1187)
|.|+..+..+++.|.+.
T Consensus 149 i~i~nR~~~~a~~l~~~ 165 (275)
T PRK00258 149 ITIVNRTVERAEELAEL 165 (275)
T ss_pred EEEEECCHHHHHHHHHH
T ss_conf 99995899999999998
No 293
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=70.10 E-value=3.3 Score=20.29 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=61.2
Q ss_pred EEECCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHH
Q ss_conf 9986998799666752111100367888532343403489999999999999999999999988740-156778784678
Q gi|254780947|r 537 LHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIH-SVPPLMVSQDLY 615 (1187)
Q Consensus 537 IeYa~~DkLYVPv~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~-~g~~f~~d~~~~ 615 (1187)
|..++|.-.+=-..++--||||.|-+..-.=+--|-.+|.++-.-|-... =|.+-|+=+.. ++..|. +-...
T Consensus 476 L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast~g~V~~e~------eL~~saKyk~V~rf~~f~-~v~~l 548 (637)
T COG4646 476 LVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWASTFGDVTTEL------ELQPSAKYKPVVRFACFV-NVPEL 548 (637)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCEEEECCCHHHH-CCHHH
T ss_conf 78447872255677665455441741888715654205889999877775------146210000411423431-33458
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 9899848888874489999999876059885414431665
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDV 655 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDV 655 (1187)
--.=.+|.|.--++-++| +--.|-...+|-.|.+.-|-
T Consensus 549 ~~m~r~FadVV~~~d~~~--~~vp~~~~d~ga~~Ivtr~~ 586 (637)
T COG4646 549 IAMFRSFADVVMPLDLRA--EYVPVPARDTGARQIVTRKP 586 (637)
T ss_pred HHHHHHHHHHCCHHHHHH--HHCCCCCCCCCHHEEEECCC
T ss_conf 999999998708298775--63767567965213530572
No 294
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional
Probab=69.77 E-value=7.2 Score=17.74 Aligned_cols=10 Identities=0% Similarity=0.033 Sum_probs=3.3
Q ss_pred CHHHHHHHHH
Q ss_conf 2279999999
Q gi|254780947|r 26 GTEGFILAEI 35 (1187)
Q Consensus 26 s~~allla~l 35 (1187)
++-+..+++|
T Consensus 30 palS~~I~~L 39 (296)
T PRK09906 30 PSLSQQIKDL 39 (296)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 295
>PRK13748 putative mercuric reductase; Provisional
Probab=69.62 E-value=7.2 Score=17.72 Aligned_cols=37 Identities=5% Similarity=-0.039 Sum_probs=25.4
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCC
Q ss_conf 5154899409741999999999982884554521783
Q gi|254780947|r 129 KDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVG 165 (1187)
Q Consensus 129 ~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~G 165 (1187)
.+..-.+.....++.++|++-....||.-....+.+.
T Consensus 36 ~~~~a~~~~~~~~~~~~~~~av~~~gy~~~~~~~~~~ 72 (561)
T PRK13748 36 PKGTAQLAIEVGTSPDALTAAVAGLGYRATLADAPLT 72 (561)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 4765899968999989999999982887311446753
No 296
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=69.19 E-value=7.4 Score=17.66 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=28.7
Q ss_pred CCCEEEECCCCCCHHHH--HHHHHH--H-CCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 88608980376522799--999998--6-29989999299899999999999857
Q gi|254780947|r 14 YCKKITLSPVIDGTEGF--ILAEIA--R-LGLSLVYICSDERILINLKKILTLVV 63 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~al--lla~l~--~-~~rpilvI~~d~~~A~~l~~dL~~f~ 63 (1187)
.++...+..-+|++|++ +++++. + .++++++.|++...-+++..+...+.
T Consensus 33 ~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~~ 87 (654)
T COG1199 33 GGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPIH 87 (654)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 6871899889985175999999998677529759998995768889876213456
No 297
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=68.64 E-value=5.2 Score=18.83 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=40.1
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHH-HH---H-CC---CCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 6514886089803765227999999-98---6-29---98999929989999999999985799
Q gi|254780947|r 10 ISEKYCKKITLSPVIDGTEGFILAE-IA---R-LG---LSLVYICSDERILINLKKILTLVVPD 65 (1187)
Q Consensus 10 ~~~k~~~~i~l~Gl~gs~~allla~-l~---~-~~---rpilvI~~d~~~A~~l~~dL~~f~~~ 65 (1187)
......+++.+.--+||+|+-++.. ++ . .+ ..+|.||=+.+.|..+.+-+..+++.
T Consensus 17 AV~~~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalTFTnkAA~Emk~Rl~~~l~~ 80 (722)
T PRK11773 17 AVAAPLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVTFTNKAAAEMRHRIEQLLGT 80 (722)
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9809999879997387159999999999999829998788289845899999999999987177
No 298
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=68.48 E-value=7.1 Score=17.78 Aligned_cols=53 Identities=21% Similarity=0.453 Sum_probs=39.0
Q ss_pred EEEEECHHHCC-CCHHHHHHH---------HCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 66762502358-860455322---------103567673699996688888988999999999
Q gi|254780947|r 907 TMIVQRADMFG-LAQLYQLRG---------RVGRSKIASFALFLLPENRPLTAAAQKRLRILQ 959 (1187)
Q Consensus 907 Tiii~~ad~~G-LaqlyQlrG---------RVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~ 959 (1187)
++++.+-|+-| +++.-++=| ++||..+..+||.+..-+..++++..+.|+.+.
T Consensus 1 ~L~v~~~D~PGvi~~I~~~L~~~~iNI~~m~l~r~~~g~~A~~ii~vD~~v~~~~l~~i~~~~ 63 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALP 63 (71)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCC
T ss_conf 988994397998999999999859788996412367997589999908989999999997699
No 299
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=67.87 E-value=4 Score=19.71 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=11.6
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 431665432489999999
Q gi|254780947|r 650 LICGDVGFGKTEIALRAA 667 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAa 667 (1187)
|+.|.-|-|||++|.+-|
T Consensus 3 ll~Gp~G~GKT~la~~la 20 (139)
T pfam07728 3 LLVGPPGTGKSELAERLA 20 (139)
T ss_pred EEECCCCCHHHHHHHHHH
T ss_conf 999899756999999999
No 300
>KOG1208 consensus
Probab=67.66 E-value=7.9 Score=17.43 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCEEEECCCCCCHHHHHHH-HHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 88608980376522799999-99862998999929989999999999985799809985
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILA-EIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF 71 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla-~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F 71 (1187)
.++...++|... +-.+-+| +|+..+..+++.+.|...++....++..=.++..+.+.
T Consensus 34 ~~~~~vVTGans-GIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~ 91 (314)
T KOG1208 34 SGKVALVTGATS-GIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVI 91 (314)
T ss_pred CCCEEEEECCCC-CHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 787799958988-4379999999957998999847778899999999710877636999
No 301
>KOG1564 consensus
Probab=67.51 E-value=7.9 Score=17.41 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=13.3
Q ss_pred CCCCCCCEEEEECCCCEECCHHHH
Q ss_conf 531222169994377321799999
Q gi|254780947|r 206 RTIREISIFEINTLSEVMLTSQNI 229 (1187)
Q Consensus 206 RSi~~i~~i~I~Pa~E~il~~e~i 229 (1187)
||.+-++.-.++=++|..+....+
T Consensus 130 ~~~GGL~~~~vYI~TE~~fP~rRL 153 (351)
T KOG1564 130 RSHGGLGGGAVYICTESPFPTRRL 153 (351)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHH
T ss_conf 510897774399976888747789
No 302
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=67.29 E-value=8 Score=17.38 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=42.7
Q ss_pred CCEEEEEECHHHHHHHH---------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCC
Q ss_conf 75499982436655589---------999998606789833541066630256777753122576089852065427852
Q gi|254780947|r 674 GLQVAVIAPTTLLVRQH---------FRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKIT 744 (1187)
Q Consensus 674 gkQvavlvPTTiLa~QH---------~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~ 744 (1187)
..-.+|++-+-.+|.+- ++++.+-|.. |..|-.+| ++++.+|. .++.-.. .-=+-+||.
T Consensus 517 ~~~iv~~~~~~~~~~~in~~~~~~~~~~~i~~~f~k-~~~vfAis----K~q~~~i~-~~~~~~~------~~~~~~~~~ 584 (613)
T PRK05896 517 PNAIVLLVEDLGLIERINKVNISFEFVKTIFKKFNK-NKLVIAIS----KKQATKIT-NIKNQKL------KTNIINDVD 584 (613)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC-EEEEEEEC----HHHHHHHH-HHHHHHC------CCCCCCCHH
T ss_conf 976999835188999988987512899999999488-04999975----78876564-1676414------678886100
Q ss_pred CCCCCEEEEECHHH
Q ss_conf 02365699722233
Q gi|254780947|r 745 FANLGLIIIDEEQH 758 (1187)
Q Consensus 745 f~~LgLliiDEEqr 758 (1187)
..||..+|--|++|
T Consensus 585 i~~~~~~~~~~~~~ 598 (613)
T PRK05896 585 IDDLKMLIKKEKTR 598 (613)
T ss_pred HHHHHHHHHCCHHH
T ss_conf 89999998422257
No 303
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=67.10 E-value=8 Score=17.36 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHHH-HHHHCCCCEEEEECC-HHHHHHHHH
Q ss_conf 799999-998629989999299-899999999
Q gi|254780947|r 28 EGFILA-EIARLGLSLVYICSD-ERILINLKK 57 (1187)
Q Consensus 28 ~allla-~l~~~~rpilvI~~d-~~~A~~l~~ 57 (1187)
-+..+| ++++.|+.+++|=.| ...+..|.+
T Consensus 18 ~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~ 49 (231)
T pfam07015 18 ALMGLCSALASDGKRVALFEADENRPLTKWRE 49 (231)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999999996899599996899868899999
No 304
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=66.81 E-value=8.1 Score=17.31 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 888999999875089989999999997762488
Q gi|254780947|r 1042 INLRLSLYRRLGNITDHADISHFKEEMVDRFGP 1074 (1187)
Q Consensus 1042 ~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~ 1074 (1187)
.++|..++++|.+-.|++|+. +.|.+|||+
T Consensus 60 ~dmR~~Ir~~i~~G~sd~eI~---~~l~~rYG~ 89 (126)
T PRK10144 60 VSMRHQVYSMVAEGKSEVEII---GWMTERYGD 89 (126)
T ss_pred HHHHHHHHHHHHCCCCHHHHH---HHHHHHCCC
T ss_conf 999999999998699999999---999986488
No 305
>PHA00012 assembly protein
Probab=66.44 E-value=8.3 Score=17.26 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCH
Q ss_conf 99999999841244688769995667852369986688515489940974199
Q gi|254780947|r 91 RRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDM 143 (1187)
Q Consensus 91 eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~ 143 (1187)
+|..++..|++..+.+-..+.|+---+.+.+-. ++.+.++....+.=|.+.+
T Consensus 103 ~R~~vidw~lHaRKlGWDv~fivQ~is~vDkQa-R~alaE~vV~crRlDri~i 154 (361)
T PHA00012 103 ERQPVIDWFLHARKLGWDIIFIIQDISIMDKQA-REALAEHVVYCRRLDKITI 154 (361)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HHHHHHHEEEEEEECCEEC
T ss_conf 077999999985004872999972488887999-9987743878874052312
No 306
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=66.30 E-value=8.3 Score=17.24 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=28.9
Q ss_pred CEEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 60898037652279999999----862998999929989999999999985799
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEI----ARLGLSLVYICSDERILINLKKILTLVVPD 65 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l----~~~~rpilvI~~d~~~A~~l~~dL~~f~~~ 65 (1187)
|-+.++|=.|.+|+-+.|++ ++.++.+|+|.-|. |..|.+-|..=+++
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDP--AhsL~D~~~~~~g~ 53 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDP--AHSLSDSFNQKFGH 53 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHCCCCCC
T ss_conf 19999579857489999999999995899299994697--21488984886799
No 307
>PRK05599 hypothetical protein; Provisional
Probab=66.25 E-value=8.3 Score=17.24 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=34.5
Q ss_pred EEECCCCCC-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 898037652-279999999862998999929989999999999985799809985
Q gi|254780947|r 18 ITLSPVIDG-TEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF 71 (1187)
Q Consensus 18 i~l~Gl~gs-~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F 71 (1187)
+.++|.+.+ ++++. ..++ .+..+++++.+.+..+++.++++...+. .|..+
T Consensus 3 vlITGASsGIG~a~A-~~lA-~G~~vvl~~R~~e~l~~l~~~l~~~g~~-~v~~~ 54 (246)
T PRK05599 3 ILILGGTSDIAGEIA-TLLA-HGEDVVLAARRPEAAGGLAEDLRQLGAT-SVHVL 54 (246)
T ss_pred EEEECCCHHHHHHHH-HHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCC-EEEEE
T ss_conf 999888689999999-9998-5994999999999999999999862597-18997
No 308
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.00 E-value=8.4 Score=17.20 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=14.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 6089803765227999999986299-89999299
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGL-SLVYICSD 48 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~r-pilvI~~d 48 (1187)
.++.+-|+.| --++++-.|++.+- .+.+|=.|
T Consensus 12 s~V~v~G~GG-vGs~~a~~LarsGVG~l~lvD~D 44 (231)
T cd00755 12 AHVAVVGLGG-VGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9789988863-68999999998099759997199
No 309
>PRK05973 replicative DNA helicase; Provisional
Probab=65.84 E-value=7.7 Score=17.49 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=4.8
Q ss_pred EEEECCCCCCCC
Q ss_conf 999810446874
Q gi|254780947|r 454 AAVILPINQGFE 465 (1187)
Q Consensus 454 ~i~~~~L~~GF~ 465 (1187)
.+..+.|+++|+
T Consensus 186 VvaLSQLnRs~E 197 (237)
T PRK05973 186 LVFISQIDRSFD 197 (237)
T ss_pred EEEEECCCCCCC
T ss_conf 999400364322
No 310
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=65.59 E-value=8.6 Score=17.15 Aligned_cols=107 Identities=13% Similarity=0.253 Sum_probs=58.1
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHH---HHH
Q ss_conf 99929989999999999985799809985722467010048998999999999999841244688769995667---852
Q gi|254780947|r 43 VYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVS---AVM 119 (1187)
Q Consensus 43 lvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~---ALl 119 (1187)
=.++-+...-.+|.+.|+-|.+...+++||+= ...-+.++..|.. +..+|+.--. ++.
T Consensus 80 rl~~G~~~~h~~LE~~lA~~~g~e~allf~SG--------------y~aN~~~i~aL~~-----~~d~i~~D~l~HaSii 140 (395)
T PRK06939 80 RFICGTQDLHKELEQKLAKFLGTEDAILYSSC--------------FDANGGLFETLLG-----KEDAIISDALNHASII 140 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCH--------------HHHHHHHHHHHCC-----CCCEEEEECCCCHHHH
T ss_conf 85747839999999999998699949997552--------------7767889999647-----9988998456358899
Q ss_pred CCCCCHHHHH-CCEEEEECCCCCCHHHHHHHHH---HCCCEECCCCCCCCEEEEECCEEEE
Q ss_conf 3699866885-1548994097419999999999---8288455452178316545747573
Q gi|254780947|r 120 CRSVNIMSIK-DYKLSIQSKDQIDMAKVIEKLE---TNGFQRVNAVYKVGEYAVRGGILDV 176 (1187)
Q Consensus 120 qklpp~~~l~-~~~l~L~vGd~id~~~L~~~Lv---~~GY~Rv~~Ve~~GEFAvRGgIIDI 176 (1187)
.-+ -+. .....+ ..-|++.|.+.|. ..+|+++=.| --|=||.-|+|-++
T Consensus 141 dG~----~ls~a~~~~f---~HnD~~~Le~~L~~~~~~~~~~~~iv-tegVfSMdGDiapL 193 (395)
T PRK06939 141 DGV----RLCKAKRYRY---ANNDMADLEAQLKEAKEAGARHKLIA-TDGVFSMDGDIANL 193 (395)
T ss_pred HHH----HHCCCCEEEE---CCCCHHHHHHHHHHHHHCCCCEEEEE-EECCCCCCCCCCCH
T ss_conf 999----8658947996---68999999999996002158628999-96677778760159
No 311
>TIGR01357 aroB 3-dehydroquinate synthase; InterPro: IPR016037 The 3-dehydroquinate synthase (4.2.3.4 from EC) domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide (P07547 from SWISSPROT) . 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.; GO: 0003856 3-dehydroquinate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=65.41 E-value=2.6 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 4589999986776488733
Q gi|254780947|r 418 QGALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 418 ~~~~eRL~elL~e~gI~~~ 436 (1187)
+...+++..+|..++++..
T Consensus 280 ~~~~~~~~~~l~~~glP~~ 298 (361)
T TIGR01357 280 AELLERLVALLKKYGLPTS 298 (361)
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 8799999999998388964
No 312
>PRK05541 adenylylsulfate kinase; Provisional
Probab=65.20 E-value=8.7 Score=17.09 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHH
Q ss_conf 88608980376522799999998----62998999929989999999999985799809985722467010048998999
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVV 89 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~ 89 (1187)
.+--+-++|++||+++-++..|. ..+.+++++--|+-+ .+ +++. -| +.. +....
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR--~~-------~~~~---gf--------s~~--~R~~n 63 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR--EI-------FGHS---GY--------DKE--SRIEM 63 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH--HH-------HCCC---CC--------CHH--HHHHH
T ss_conf 867999789999989999999999999759977998868999--87-------3658---98--------999--99999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 999999999841244688769995667852
Q gi|254780947|r 90 TRRLSCISNLVSFNSSKETIIVLTTVSAVM 119 (1187)
Q Consensus 90 ~eRl~~L~~L~~~~~~~~~~IIVtt~~ALl 119 (1187)
..|+.-|.+++. +...+||++.-+..
T Consensus 64 ~~r~~~lak~l~----~~g~~vIvs~isp~ 89 (176)
T PRK05541 64 ALKRAKLAAFLA----DQGMIVIVTTISMF 89 (176)
T ss_pred HHHHHHHHHHHH----HCCCCEEEEECCCC
T ss_conf 999999999986----46980367522798
No 313
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=64.34 E-value=5.9 Score=18.37 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=28.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 886089803765227999999986-29989999299
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIAR-LGLSLVYICSD 48 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d 48 (1187)
..++|.+-|-+|++++.++-.|++ .+.|.+.|-.+
T Consensus 49 ~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkveAT 84 (442)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (442)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 643168878888667899999999848985875213
No 314
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.33 E-value=6 Score=18.31 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=11.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCEEE
Q ss_conf 60898037652279999999862-998999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARL-GLSLVY 44 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~-~rpilv 44 (1187)
++|..-|-+|-++.=++..|++. +.|.+=
T Consensus 51 KNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 51 KNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 535888888876889999999984898378
No 315
>pfam04415 DUF515 Protein of unknown function (DUF515). Family of hypothetical Archaeal proteins.
Probab=64.15 E-value=8.6 Score=17.13 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHC-CEEEEECCCC---CCHHHHHHHHHHCCC---
Q ss_conf 899899999999999984124468876999566785236998668851-5489940974---199999999998288---
Q gi|254780947|r 83 SPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKD-YKLSIQSKDQ---IDMAKVIEKLETNGF--- 155 (1187)
Q Consensus 83 sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~-~~l~L~vGd~---id~~~L~~~Lv~~GY--- 155 (1187)
+-..++.++=++++..|...-. +..+.+..+..-|.+-.+.. .-+.++.|.+ +..++....+-.++|
T Consensus 146 ~l~~el~~ki~~~~n~Ll~~vd------~a~~~~ev~~~~~~~yL~~lwk~yYlk~~~~k~i~Tk~eak~ii~~~~~~eL 219 (416)
T pfam04415 146 SLPDELKRKITATLNSLLKQVD------SAKTIDEVLEISPDKYLLSLWKYYYLEKNGESVFMTKDEAKKIISQVDLSEL 219 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCCHHHHHCCHHHEEECCCCCEEEEHHHHHHHHHHCCHHHH
T ss_conf 2218899888999999998752------3320677764483077663032313432871116669999999603489999
Q ss_pred -----EECCCC---------CCCCEEEEECCEEEEECCCCC
Q ss_conf -----455452---------178316545747573069888
Q gi|254780947|r 156 -----QRVNAV---------YKVGEYAVRGGILDVYEPTKK 182 (1187)
Q Consensus 156 -----~Rv~~V---------e~~GEFAvRGgIIDIFp~~~~ 182 (1187)
+.|++| ...|.|-.-|++|+||.-+..
T Consensus 220 ~~yki~~v~~v~~~lvl~r~~~~G~~~~~Gd~I~IY~knn~ 260 (416)
T pfam04415 220 KEYKVTPVETVNKALVLTRLQQCGGLPSPGDMVKVYLKQNG 260 (416)
T ss_pred HHCCCCCHHHEEEEEEEECHHHCCCCCCCCCEEEEEECCCC
T ss_conf 62400234551301156307444787898888999935897
No 316
>pfam07475 Hpr_kinase_C HPr Serine kinase C-terminal domain. This family represents the C terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller.
Probab=64.04 E-value=4.3 Score=19.47 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=13.9
Q ss_pred CCCCC-CCCCEEEEECCCCCCCCCCC
Q ss_conf 44687-46656887120013731112
Q gi|254780947|r 460 INQGF-ETKHMILVTETDLLGKKIAR 484 (1187)
Q Consensus 460 L~~GF-~~~kl~vITE~EIFG~k~~~ 484 (1187)
+-+|| +...+-+|.=.++||.+..+
T Consensus 68 ~~~~~lEvRGlGiidV~~lfG~~avr 93 (171)
T pfam07475 68 ILRHFLEVRGLGIINVRALFGAGAVR 93 (171)
T ss_pred HHHHHHHHCCCCEEEHHHHCCHHHEE
T ss_conf 87417754588488544724866613
No 317
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=63.70 E-value=9.2 Score=16.90 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=24.3
Q ss_pred EEECCCCCCHHHHHHHH----HHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 89803765227999999----9862998999929989999999999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE----IARLGLSLVYICSDERILINLKKIL 59 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~----l~~~~rpilvI~~d~~~A~~l~~dL 59 (1187)
+.++|=.|.+|+-+.|+ +++.++.+++|.-|. |..+.+-|
T Consensus 3 i~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDP--ahsLsd~f 46 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP--AHSLSDSF 46 (254)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHH
T ss_conf 999689855489999999999996899499995898--64488984
No 318
>KOG0701 consensus
Probab=63.53 E-value=1.6 Score=22.86 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=28.2
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHH
Q ss_conf 488888744899999998760598854144316--65432489999999875
Q gi|254780947|r 621 RFPHVETEDQEKAIDAVIQDLSSGRLMDRLICG--DVGFGKTEIALRAAFIA 670 (1187)
Q Consensus 621 ~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCG--DVGfGKTEVA~RAafka 670 (1187)
+|-|.++--=-.-|.+.-.+|+.--+==+..=| |++++|+..-+=.|+..
T Consensus 1109 ~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlg 1160 (1606)
T KOG0701 1109 DQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLAPKSPADLLEALLG 1160 (1606)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHH
T ss_conf 3320012132233167887643037765233321200158878999999877
No 319
>PRK08727 hypothetical protein; Validated
Probab=63.49 E-value=9.3 Score=16.87 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=77.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 989984888887448999999987605988541-4431665432489999999875112754999824366555899999
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMD-RLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLF 694 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMD-RLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf 694 (1187)
..|++ | ...+.. ++..+ ..+..+.+=+ =.|||..|-|||-.+--++-.+-..|+.++.+ |..-..
T Consensus 16 ~tfdn-F--i~~~n~--~~a~l-~~~~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl-~l~~~~------- 81 (233)
T PRK08727 16 QRFDS-Y--IAAPDG--LLAQL-QALAAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYL-PLQAAA------- 81 (233)
T ss_pred CCHHH-C--CCCCHH--HHHHH-HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE-EHHHHH-------
T ss_conf 24212-0--678559--99999-9874388889899989999988999999999998279972884-478853-------
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHH-HHHH-H----HH
Q ss_conf 9860678983354106663025677775312257608985206542785202365699722233008-8899-8----86
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGV-KHKE-A----LK 768 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV-~~Ke-~----lk 768 (1187)
++. .++++++ ....+|.||-=|...- ..-| . +-
T Consensus 82 -----~~~---------------~~~l~~l---------------------e~~~ll~iDDid~i~g~~~~e~aLFhL~N 120 (233)
T PRK08727 82 -----GRL---------------RDALEAL---------------------EGRSLVALDGVDSIAGQREDEVALFDFHN 120 (233)
T ss_pred -----HHH---------------HHHHHHH---------------------CCCCEEEEECCHHCCCCHHHHHHHHHHHH
T ss_conf -----202---------------5677531---------------------03897898550112698279999999999
Q ss_pred HCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 3167884899953534088999971222541220157887753799985797898999998987188
Q gi|254780947|r 769 ETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGG 835 (1187)
Q Consensus 769 ~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgG 835 (1187)
.++.+---|-+||+--|..++..|--+| |-+. .-....+.+-|++....++.+-..+-|
T Consensus 121 ~~~~~~~~ll~ts~~~P~~l~~~l~DL~--SRL~------~~~~~~l~~~dD~~~~~iL~~~a~~rg 179 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGLALVLPDLR--SRLS------QCIRIGLPVLDDVARAAVLRDRAQRRG 179 (233)
T ss_pred HHHHCCCEEEEECCCCHHHHCCCHHHHH--HHHH------CCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 9986198389977989566231002199--9996------692288578897999999999999869
No 320
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=63.41 E-value=9.3 Score=16.86 Aligned_cols=106 Identities=20% Similarity=0.380 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEE
Q ss_conf 00888998863167884899953534088999971222541220157887753799985797898999998987188599
Q gi|254780947|r 759 FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSF 838 (1187)
Q Consensus 759 FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~RgGQvf 838 (1187)
+|..--+||++ +.|=|.-+.+.=-|=-.+++++|+..+-++.--+.+ . -+=+.|.|
T Consensus 11 ~G~egQ~kL~~--s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v~-----------------~-----snL~RQ~l 66 (197)
T cd01492 11 WGLEAQKRLRS--ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT-----------------E-----EDLGAQFL 66 (197)
T ss_pred CCHHHHHHHHC--CCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC-----------------H-----HHCCCCEE
T ss_conf 69999999960--959998878899999999998379869999899187-----------------7-----77397860
Q ss_pred EEECCCC--CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 9826446--9288999998616546488861346747899999999638875797610
Q gi|254780947|r 839 YVCPRLS--DLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTS 894 (1187)
Q Consensus 839 ~v~nrv~--~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~Tt 894 (1187)
|-...|. ..+..+++|+++-|+++|.+-+...++.. .+|+. ++|+.|++|
T Consensus 67 ~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~~~~~-----~~~i~-~~D~Vvd~~ 118 (197)
T cd01492 67 IPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKP-----EEFFS-QFDVVVATE 118 (197)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHH-----HHHHH-CCCEEEECC
T ss_conf 32334788859999999997389972898704585768-----99982-899999999
No 321
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=63.33 E-value=5.5 Score=18.62 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=37.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEE---ECCCCCCC
Q ss_conf 6089803765227999999986-29989999299899999999999857998099---85722467
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIAR-LGLSLVYICSDERILINLKKILTLVVPDIRVI---IFPAWDCL 77 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~---~FP~~E~L 77 (1187)
.-+.++|.+|.+++-+++.|+. .+-+.++=|..-++. |+.+.++.+.+ .|-+|+.+
T Consensus 4 ~iiligG~sGvGKStla~~lA~rlgi~~visTD~IRev------lR~~i~~eP~L~~Ssy~A~~~~ 63 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREF------LRPYVDDEPVLAKSVYDAWEFY 63 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHH------HHHHCCCCCCHHHHHHHHHHHC
T ss_conf 79998579988789999999997499755343479999------9986688740033046798870
No 322
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=63.18 E-value=8.3 Score=17.27 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q ss_conf 89458999998677648873
Q gi|254780947|r 416 SSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 416 ~s~~~~eRL~elL~e~gI~~ 435 (1187)
.+-...+|+...|..|||..
T Consensus 239 ~~l~E~~R~~~~L~~Y~~~~ 258 (330)
T TIGR00345 239 MSLYESERAHKELKKYGIKV 258 (330)
T ss_pred CCHHHHHHHHHHHHHCCCCC
T ss_conf 42789999999998649850
No 323
>KOG1001 consensus
Probab=63.07 E-value=9.5 Score=16.81 Aligned_cols=244 Identities=18% Similarity=0.196 Sum_probs=107.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHH----------CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCHHHH
Q ss_conf 4316654324899999998751----------12754999824366555899999986067898335410-666302567
Q gi|254780947|r 650 LICGDVGFGKTEIALRAAFIAV----------MNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASIS-RFVQTKEAA 718 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAafkav----------~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~ls-Rf~~~~e~~ 718 (1187)
++--|.|=|||=.++ |.+..- ..++---++|||.++-|=+=+- .+=-+.=-..|.+.- |-.-+++-
T Consensus 156 Iladd~glgkt~~ti-~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~el-ek~~~~~~l~v~v~~gr~kd~~el- 232 (674)
T KOG1001 156 ILADDMGLGKTVKTI-ALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTEEDKLSIYVYHGRTKDKSEL- 232 (674)
T ss_pred EEEECCCCCHHHHHH-HHHHHCCCCCCCHHHCCCCCCEEEECCHHHHHHHHHHH-HCCCCCCCEEEEEECCCCCCCCHH-
T ss_conf 676510141589999-99996436771023302467436966658888888887-335886646999961642433134-
Q ss_pred HHHHHHCCCCCEEEEECHHHHC----CCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEE--------ECCCCCH
Q ss_conf 7775312257608985206542----785202365699722233008889988631678848999--------5353408
Q gi|254780947|r 719 LHKKSITEGQVDIVIGTHALLN----PKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTL--------SATPIPR 786 (1187)
Q Consensus 719 ~i~~~l~~G~idiviGTH~ll~----~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdvLtl--------sATPIPR 786 (1187)
-+.|+|+-|-.++. ..|.|. .+|+||.|.- ++++.- .--.+-.| |+|||=-
T Consensus 233 --------~~~dvVltTy~il~~~~l~~i~w~---Riildea~~i--kn~~tq----~~~a~~~L~a~~RWcLtgtPiqn 295 (674)
T KOG1001 233 --------NSYDVVLTTYDILKNSPLVKIKWL---RIVLDEAHTI--KNKDTQ----IFKAVCQLDAKYRWCLTGTPIQN 295 (674)
T ss_pred --------CCCCEEEEEHHHHHCCCCCCEEEE---EEEECCCCCC--CCCCHH----HHHHHEEECCCEEEEECCCHHHH
T ss_conf --------177669933788515350012578---8870120026--785267----66551353142225404782566
Q ss_pred HH-----------------------------------------HHHHHC----------CCCCCEEECCCCCCCCEEEEE
Q ss_conf 89-----------------------------------------999712----------225412201578877537999
Q gi|254780947|r 787 TL-----------------------------------------QLAITG----------VRELSLISMPPINRIACRTSI 815 (1187)
Q Consensus 787 TL-----------------------------------------~msl~g----------~rd~S~i~tpP~~R~~v~T~v 815 (1187)
.+ ++.|.. ++..+++..||....-+...-
T Consensus 296 ~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~ 375 (674)
T KOG1001 296 NLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDL 375 (674)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 49999999987603873036789887137153124888999999999998741563232357533346862268641233
Q ss_pred EECCHHHHHH------HHHHHHHHCCEEEEEECCCCCHH----HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 8579789899------99989871885999826446928----8999998616546488861346747899999999638
Q gi|254780947|r 816 SIFDPLVVRE------TLMREYYRGGQSFYVCPRLSDLE----KCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEG 885 (1187)
Q Consensus 816 ~~~~~~~i~~------ai~rEl~RgGQvf~v~nrv~~i~----~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~ 885 (1187)
........++ .........|+|.+=|.-+--+- .+..+....+.+.....--|.-...... ...++..+
T Consensus 376 ~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~-~i~~l~~~ 454 (674)
T KOG1001 376 SKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIR-LIVDLSVS 454 (674)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHC
T ss_conf 07678899987641456787776524244217889999999998635546541133133221235257899-99997422
Q ss_pred CCCEEEECCCEECCCCCCCCCEEEEECHHHCCCCHHHHH
Q ss_conf 875797610200363322332667625023588604553
Q gi|254780947|r 886 QYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQL 924 (1187)
Q Consensus 886 ~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GLaqlyQl 924 (1187)
+..-+|.. -+...|+..++.|..+.+.+.
T Consensus 455 -~~c~ic~~---------~~~~~it~c~h~~c~~c~~~~ 483 (674)
T KOG1001 455 -HWCHICCD---------LDSFFITRCGHDFCVECLKKS 483 (674)
T ss_pred -CCCCCCCC---------CCCCEEECCCCHHHHHHHHHC
T ss_conf -65444345---------466244336644889998744
No 324
>pfam02503 PP_kinase Polyphosphate kinase. Polyphosphate kinase (Ppk) catalyses the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules.
Probab=63.01 E-value=6.3 Score=18.17 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999986798299995894589-----9999867764887332345
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASSQGAL-----QHLIHLIESHGFKKIKKIN 440 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s~~~~-----eRL~elL~e~gI~~~~~~~ 440 (1187)
..+++.+-+..++|.+|.++.+=+.+. =..++.|++.|+..++...
T Consensus 375 S~Iv~aLi~AA~nGK~VtvlVELkARFDEe~NI~wA~~Le~aGv~ViyG~~ 425 (678)
T pfam02503 375 SPIVDALIEAAENGKQVTVLVELKARFDEENNIRWARRLEEAGVHVIYGVV 425 (678)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 889999999998298899999973340678889999999859929991788
No 325
>pfam12073 DUF3553 Protein of unknown function (DUF3553). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=62.87 E-value=6.3 Score=18.18 Aligned_cols=45 Identities=16% Similarity=0.407 Sum_probs=31.1
Q ss_pred HCCCCCEEECC---CCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHH
Q ss_conf 03235112035---542331123101456666635999986998799666752111
Q gi|254780947|r 503 IEEGAIIVHAE---HGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLI 555 (1187)
Q Consensus 503 L~~GDyVVH~d---HGIGrY~GLe~l~v~G~~~DyL~IeYa~~DkLYVPv~~l~lI 555 (1187)
|.|||+|.|-+ .|||+-.-. ...-+.+-|.+-.|.-+-.++++|.
T Consensus 1 lePG~~V~~P~~pdWGiGQVQS~--------I~~kvTVNFe~~GK~vI~~~~i~L~ 48 (52)
T pfam12073 1 LEPGMLVRHPDQPDWGVGQVQSN--------IGGRITVNFEHAGKVVIDGSRVALE 48 (52)
T ss_pred CCCCCEEECCCCCCCCCCEEEEE--------CCCEEEEECCCCCCEEEECCEEEEE
T ss_conf 98977876899987770025543--------0887899323677589815668899
No 326
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=62.79 E-value=5.7 Score=18.51 Aligned_cols=61 Identities=8% Similarity=0.219 Sum_probs=44.1
Q ss_pred EEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEEC
Q ss_conf 9956678523699866885154899409741999999999982884554521783165457
Q gi|254780947|r 111 VLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRG 171 (1187)
Q Consensus 111 IVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRG 171 (1187)
.|=|=++++|-=..+.+|.++-+.+..=+-=.-.+.+++|-++||+.++.|+.-|+=++=|
T Consensus 2 tvysKNnCvQCkmTKk~L~~~~i~Fe~inid~~pea~d~vk~lGF~~~PVi~~~g~~~~SG 62 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAVDYVKALGFRQVPVIVAEGDESWSG 62 (72)
T ss_pred EEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEECCEEEECCCEEEEC
T ss_conf 5531798505215776676379961576358884378999874863076267679700213
No 327
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=62.70 E-value=6.1 Score=18.26 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=56.9
Q ss_pred EEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHH
Q ss_conf 8980376522799999998----629989999299899999999999857998099857224670100489989999999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRL 93 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl 93 (1187)
+-++|++||+++-++..|. +.+.+++++--|+-+. .+.++. .|+.. +......|+
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~--------~l~~~l-----------gys~~--~R~~n~~r~ 60 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH--------GLNKDL-----------GFSRE--DREENIRRI 60 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH--------HHCCCC-----------CCCHH--HHHHHHHHH
T ss_conf 898799999999999999999998699759977488997--------736555-----------98878--899999999
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCE---EEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 999998412446887699956678523699866885154---8994097419999999999828845
Q gi|254780947|r 94 SCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYK---LSIQSKDQIDMAKVIEKLETNGFQR 157 (1187)
Q Consensus 94 ~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~---l~L~vGd~id~~~L~~~Lv~~GY~R 157 (1187)
.-|.+++.. +..+||.++-|..... ++..++.. -.+.+==..+++.+.++=...=|.+
T Consensus 61 ~~lak~l~~----qg~~VIvs~isp~~~~--R~~~r~~i~~~~y~eIyl~~~le~~~~RD~KglY~k 121 (149)
T cd02027 61 AEVAKLLAD----AGLIVIAAFISPYRED--REAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKK 121 (149)
T ss_pred HHHHHHHHH----CCCEEEEECCCCCHHH--HHHHHHHCCCCCEEEEEECCCHHHHHHCCCHHHHHH
T ss_conf 999999983----7982788416788999--999998747776699997187899987380437889
No 328
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=62.42 E-value=4.3 Score=19.46 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=20.3
Q ss_pred CEEEEEECC-----HHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 829999589-----45899999867764887332345224552
Q gi|254780947|r 409 IKTIISASS-----QGALQHLIHLIESHGFKKIKKINTLTEIN 446 (1187)
Q Consensus 409 ~rViI~a~s-----~~~~eRL~elL~e~gI~~~~~~~~~~~~~ 446 (1187)
.+|+++|.| .--++++.++++++|++.....-...+..
T Consensus 3 KkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~ 45 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE 45 (94)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH
T ss_conf 5599985883759999999999999985980689997478755
No 329
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=62.16 E-value=9.8 Score=16.70 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6654324899999998751127549998
Q gi|254780947|r 653 GDVGFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 653 GDVGfGKTEVA~RAafkav~~gkQvavl 680 (1187)
|-=|-|||-||.--|+..+..|+.|+++
T Consensus 7 ~kggvgkst~~~~la~~l~~~g~~v~~~ 34 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9998819999999999999879978999
No 330
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=62.10 E-value=9.8 Score=16.69 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4886089803765227999999986
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIAR 37 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~~ 37 (1187)
+-+....++|-.|.+++-++-.+++
T Consensus 36 rl~HAyLFsGprG~GKTt~ArilAk 60 (560)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFAR 60 (560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9774366328998789999999999
No 331
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=62.10 E-value=9.8 Score=16.69 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=29.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEE
Q ss_conf 5489940974199999999998288455452178316545
Q gi|254780947|r 131 YKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVR 170 (1187)
Q Consensus 131 ~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvR 170 (1187)
..+.+-+.+....+++..++...||. ++..++.|+|.++
T Consensus 26 ~~l~Vlvd~~~a~~ni~~~a~~~G~~-v~~~e~~~~~~i~ 64 (67)
T cd03421 26 GEIEVLVDNEVAKENVSRFAESRGYE-VSVEEKGGEFEIT 64 (67)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCE-EEEEEECCEEEEE
T ss_conf 87999986841788999999977998-7899839999999
No 332
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=62.02 E-value=9.8 Score=16.68 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=9.7
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 898037652279999999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEI 35 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l 35 (1187)
+.+.|-+|++|++++.++
T Consensus 37 l~i~G~~G~GKTHLLqA~ 54 (219)
T pfam00308 37 LFIYGGVGLGKTHLLHAI 54 (219)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 699889999888999999
No 333
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=61.75 E-value=9.9 Score=16.65 Aligned_cols=17 Identities=0% Similarity=-0.169 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 89803765227999999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE 34 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~ 34 (1187)
..+.|-+||+|+-+..+
T Consensus 46 TEi~G~~gsGKTQlc~q 62 (261)
T pfam08423 46 TEVFGEFRTGKTQLCHT 62 (261)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989988878999999
No 334
>PRK05443 polyphosphate kinase; Provisional
Probab=61.75 E-value=6.9 Score=17.89 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999986798299995894589-----9999867764887332345
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASSQGAL-----QHLIHLIESHGFKKIKKIN 440 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s~~~~-----eRL~elL~e~gI~~~~~~~ 440 (1187)
..+++.+.+..++|.+|.++.+=+.+. =..++.|.+.|+..++...
T Consensus 382 S~Iv~aLi~AA~nGK~VtvlVELkARFDEe~NI~wA~~Le~aGv~ViYG~~ 432 (692)
T PRK05443 382 SPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 432 (692)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 889999999998298899999973340678889999999859929991788
No 335
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=61.58 E-value=10 Score=16.63 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999986798299995894589999986776488733
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~ 436 (1187)
+.+..-+++..++|+.+++..... .++.+++|++..
T Consensus 110 ~e~~~~i~~l~~~G~~vvVG~~~~------~~~A~~~Gl~~v 145 (169)
T pfam06506 110 EEARAAVKELKAQGIKVIVGDGLV------CDLAEQAGLQGV 145 (169)
T ss_pred HHHHHHHHHHHHCCCEEEECCCHH------HHHHHHCCCCEE
T ss_conf 999999999998699599858289------999998399579
No 336
>KOG1728 consensus
Probab=61.36 E-value=7 Score=17.84 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=7.1
Q ss_pred HHHHCCCCCEE
Q ss_conf 44403235112
Q gi|254780947|r 500 SSNIEEGAIIV 510 (1187)
Q Consensus 500 l~eL~~GDyVV 510 (1187)
|.++++||.|.
T Consensus 115 Frdi~~gDiVt 125 (156)
T KOG1728 115 FRDIQEGDIVT 125 (156)
T ss_pred HHCCCCCCEEE
T ss_conf 41066588798
No 337
>PRK07105 pyridoxamine kinase; Validated
Probab=61.34 E-value=10 Score=16.60 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=21.5
Q ss_pred CCEE-EEEHHHHHHHHHH-CCCCC--C-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9879-9666752111100-36788--8-532343403489999999999999999
Q gi|254780947|r 542 NAKL-FVPVENIDLISRY-STEIT--T-VTLDKLGGSAWKTRKANLKKRLEDLAQ 591 (1187)
Q Consensus 542 ~DkL-YVPv~~l~lIskY-g~~~~--~-p~L~kLGg~~W~k~K~Kakk~v~diA~ 591 (1187)
++++ ++....++. .| |+++. . ..=.-+.|.+...+-++|++-|.+.=+
T Consensus 202 ~~~~~~~~~~~i~~--~~~GTGd~fss~iaa~la~G~~l~~Av~~A~~fv~~aI~ 254 (284)
T PRK07105 202 SDRFWKHFGKYIPA--HYPGTGDIFTSVITGSLLQGLSLPQALDRAVQFIEKGIR 254 (284)
T ss_pred CCEEEEEECCCCCC--CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98899962654189--989841789999999998799999999999999999999
No 338
>PRK09508 leuO leucine transcriptional activator; Reviewed
Probab=61.13 E-value=10 Score=16.57 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 79999999999999741
Q gi|254780947|r 224 LTSQNISRFRENYLANF 240 (1187)
Q Consensus 224 l~~e~i~~fr~~~r~~f 240 (1187)
++..++++..+++++.|
T Consensus 48 vSQpAvS~aL~rLr~~~ 64 (314)
T PRK09508 48 MSQPAVSNAVARLKVMF 64 (314)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 98669999999999981
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=60.83 E-value=10 Score=16.53 Aligned_cols=172 Identities=13% Similarity=0.165 Sum_probs=92.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCH-HH
Q ss_conf 86089803765227999999986-----2998999929989999999999985799809985722467010048998-99
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIAR-----LGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSP-YV 88 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~~-----~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~-di 88 (1187)
..-+.+.|+.||+++-.+|.|+. .++++++++.|-.++..+ +.|+.+.....|-+|+... ..++ ++
T Consensus 100 p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~-eQL~~la~~~~v~~~~~~~-------~~dp~~i 171 (453)
T PRK10867 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI-KQLETLAEQVGVDFFPSDV-------GQKPVDI 171 (453)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCEECCCC-------CCCHHHH
T ss_conf 9699997468885185899999999973898379855887705899-9999999851980436788-------9988999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHC------------CCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 99999999998412446887699956678523------------699866885154899409741999999999982884
Q gi|254780947|r 89 VTRRLSCISNLVSFNSSKETIIVLTTVSAVMC------------RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQ 156 (1187)
Q Consensus 89 ~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlq------------klpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~ 156 (1187)
... ++.... ..+-..|||-|+--+.. +...|+.. =..+.-..||.. .+....+=...|..
T Consensus 172 a~~---a~~~ak---~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~-llV~Da~~GQ~a-~~~a~~F~~~~~~~ 243 (453)
T PRK10867 172 VNA---ALKEAK---LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVET-LFVVDAMTGQDA-ANTAKAFNEALPLT 243 (453)
T ss_pred HHH---HHHHHH---HCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCE-EEEEECCCCHHH-HHHHHHHHHHCCCC
T ss_conf 999---999999---7799999997876012108889999999876378713-797432235668-99999999855987
Q ss_pred ECCCCCCCCEEEEECCE-EEEECCCCCCCEEEECCCCEEEEEEEEECCCC
Q ss_conf 55452178316545747-57306988872688634872210154513748
Q gi|254780947|r 157 RVNAVYKVGEYAVRGGI-LDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQ 205 (1187)
Q Consensus 157 Rv~~Ve~~GEFAvRGgI-IDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQ 205 (1187)
-+=.----| .-|||. +-+-. ....||.--=.|..+|.+-.|+|+.=
T Consensus 244 gvIlTKlDg--darGG~alS~~~-~t~~PI~FiG~GEk~ddle~F~p~r~ 290 (453)
T PRK10867 244 GVVLTKVDG--DARGGAALSIRH-ITGKPIKFLGVGEKTDALEPFHPDRI 290 (453)
T ss_pred EEEEECCCC--CCCCHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCHHHH
T ss_conf 078750467--876138989999-97869678866998245887684899
No 340
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=60.79 E-value=2.7 Score=21.03 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=28.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 443166543248999999987511275499982436655589999998606789833541066630256777
Q gi|254780947|r 649 RLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH 720 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i 720 (1187)
=+++||.|-|||.-+ |+-.++. |.+-.|--||=.|.+.+ + ..++++-=-=|-|..+..|-..+
T Consensus 18 i~L~G~LGaGKTtfv-r~i~~~l--g~~~~V~SPTF~lv~~Y-~-----~~~~~i~H~DlYRl~~~~e~~~l 80 (123)
T pfam02367 18 VLLSGDLGAGKTTFV-RGLAKGL--GITGNVTSPTFTLVNVY-E-----PGKLPLYHYDLYRLEDPEELELL 80 (123)
T ss_pred EEEECCCCCCHHHHH-HHHHHHC--CCCCCCCCCCEEEEEEE-C-----CCCCEEEEEEEECCCCHHHHHHC
T ss_conf 999888778899999-9999985--99887379955889997-0-----89963999983326997789877
No 341
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=60.78 E-value=10 Score=16.53 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=5.9
Q ss_pred HHHHCCCEEEEEEC
Q ss_conf 99867982999958
Q gi|254780947|r 403 QQAQKGIKTIISAS 416 (1187)
Q Consensus 403 ~~~k~g~rViI~a~ 416 (1187)
.++.+|-.|++.+.
T Consensus 174 ~li~~GaDvI~~~a 187 (260)
T cd06304 174 ALIDQGADVIFAAA 187 (260)
T ss_pred HHHHCCCCEEEECC
T ss_conf 99976998999888
No 342
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=60.54 E-value=10 Score=16.50 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=10.2
Q ss_pred EEECCCCCCHHHHHHHHHH
Q ss_conf 8980376522799999998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIA 36 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~ 36 (1187)
|-++|-+||+|+.++..|.
T Consensus 2 IgIaG~SgSGKTT~a~~L~ 20 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFV 20 (196)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8998998571999999999
No 343
>PRK10865 protein disaggregation chaperone; Provisional
Probab=60.45 E-value=10 Score=16.48 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=67.5
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHH----HHHHHHHHHHHCCE
Q ss_conf 88899886316788489995353408899997122254122015788775379998579789----89999989871885
Q gi|254780947|r 761 VKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLV----VRETLMREYYRGGQ 836 (1187)
Q Consensus 761 V~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~----i~~ai~rEl~RgGQ 836 (1187)
+-|.+.++. |-+.+..|-+|++|= +.||-+|.--=-..+ +..|+-.+|.-+..
T Consensus 571 iGQd~AI~~--------------v~~aI~~sraGL~dp---------~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~ 627 (857)
T PRK10865 571 IGQNEAVEA--------------VSNAIRRSRAGLSDP---------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDD 627 (857)
T ss_pred CCHHHHHHH--------------HHHHHHHHHCCCCCC---------CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHH
T ss_conf 280999999--------------999999986389999---------997389998689878889999999999838933
Q ss_pred EEEEECCCCCHHHHHHHHHHHC--CCCCEEEEE-CCCCHH------------HHHHHHHHHHCCCCCEEEECCCEEC-CC
Q ss_conf 9998264469288999998616--546488861-346747------------8999999996388757976102003-63
Q gi|254780947|r 837 SFYVCPRLSDLEKCYTFLQSEV--PELKIAMAH-GQMSPK------------NLEDKMNAFYEGQYDVLLSTSIVES-GL 900 (1187)
Q Consensus 837 vf~v~nrv~~i~~~~~~l~~l~--p~~~i~vaH-Gqm~~~------------~le~~m~~F~~~~~dvLv~TtIiEs-Gl 900 (1187)
-..-.|=-|=.+. .-+.+|+ |-.-||+.. ||+.+. |+||.--+.++==+.||=--++--+ |=
T Consensus 628 ~liriDMSEy~E~--hsVSrLiGaPPGYVGy~eGG~LTeaVRr~PySVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr 705 (857)
T PRK10865 628 AMVRIDMSEFMEK--HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred HEEEECCHHHCCC--HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEECCCCC
T ss_conf 4256253321130--12767558998766757788110999819877886325766385899999987036832079998
Q ss_pred CCCCCCEEEEECHH
Q ss_conf 32233266762502
Q gi|254780947|r 901 DLPKANTMIVQRAD 914 (1187)
Q Consensus 901 Dip~aNTiii~~ad 914 (1187)
.|---|||||.-++
T Consensus 706 ~vdF~NtIIImTSN 719 (857)
T PRK10865 706 TVDFRNTVVIMTSN 719 (857)
T ss_pred EEEEEEEEEEECCC
T ss_conf 88513348996462
No 344
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=60.43 E-value=10 Score=16.48 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=12.5
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHHHHHH
Q ss_conf 6733467613346535899998899999
Q gi|254780947|r 276 IFPYLSEFCIITDPLVKETARKRSQLIQ 303 (1187)
Q Consensus 276 LfDYLp~~~iii~~~~~e~~~~~~~~i~ 303 (1187)
|..+.|+..+|+.+-..|......++..
T Consensus 254 l~~~~~~~llIlVPRHpERf~~v~~l~~ 281 (419)
T COG1519 254 LKKQFPNLLLILVPRHPERFKAVENLLK 281 (419)
T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 9963899569991587556799999999
No 345
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=60.13 E-value=11 Score=16.45 Aligned_cols=33 Identities=9% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 8589999999999867982999958945899999867
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLI 428 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL 428 (1187)
++++.|+.+|+ ++|.|+|+++|-+||.|+++.-
T Consensus 181 ~~IEeLi~eLk----~~YTivIVTHnMqQA~RiSD~t 213 (248)
T TIGR00972 181 GKIEELIQELK----KKYTIVIVTHNMQQAARISDRT 213 (248)
T ss_pred HHHHHHHHHHH----HCCEEEEEECCHHHHHHHHHHH
T ss_conf 99999999876----5297998817756789999999
No 346
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.04 E-value=11 Score=16.44 Aligned_cols=132 Identities=6% Similarity=0.009 Sum_probs=63.4
Q ss_pred HHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHC-CCCEEEE---ECCHHHHHHHHHHHHH---HCCCCEEEECCCCCC
Q ss_conf 77887651-48860898037652279999999862-9989999---2998999999999998---579980998572246
Q gi|254780947|r 5 SDIERISE-KYCKKITLSPVIDGTEGFILAEIARL-GLSLVYI---CSDERILINLKKILTL---VVPDIRVIIFPAWDC 76 (1187)
Q Consensus 5 ~~~~~~~~-k~~~~i~l~Gl~gs~~allla~l~~~-~rpilvI---~~d~~~A~~l~~dL~~---f~~~~~V~~FP~~E~ 76 (1187)
..+.++.+ ..-.++.+-|-||++|+-++.-+++. +...+-+ +..-++..+..++-+. +.+...|++.-
T Consensus 41 ~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~sgvkdlr~ii~~A~~~~~~~g~~tILFID---- 116 (726)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDAAKERLERHGKRTILFID---- 116 (726)
T ss_pred CHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----
T ss_conf 2899999769998278889799999999999988748867998562037799999999999998745996599986----
Q ss_pred CCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 70100489989999999999998412446887699956678523699866885154899409741999999999
Q gi|254780947|r 77 LPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKL 150 (1187)
Q Consensus 77 LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~L 150 (1187)
-.|.-..++.=..|-.+ .++.-.+|=+|.++=.-.+.|+=.-.-..+.|+.=+.-|+..++++-
T Consensus 117 ------EIHRfNK~QQD~LLp~v----E~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rA 180 (726)
T PRK13341 117 ------EVHRFNKAQQDALLPWV----ENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRA 180 (726)
T ss_pred ------CHHHCCHHHHHHHHHHH----CCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHH
T ss_conf ------25425887899878886----06838999704789743642988832346674389999999999999
No 347
>KOG1370 consensus
Probab=59.83 E-value=4.6 Score=19.22 Aligned_cols=67 Identities=31% Similarity=0.556 Sum_probs=41.5
Q ss_pred CCCCCCCCEEEE--CCCCCCH-------------HHHHHHHHHHHHCCCCEEE----------EEECHH----HHHHHHH
Q ss_conf 059885414431--6654324-------------8999999987511275499----------982436----6555899
Q gi|254780947|r 641 LSSGRLMDRLIC--GDVGFGK-------------TEIALRAAFIAVMNGLQVA----------VIAPTT----LLVRQHF 691 (1187)
Q Consensus 641 mes~~PMDRLiC--GDVGfGK-------------TEVA~RAafkav~~gkQva----------vlvPTT----iLa~QH~ 691 (1187)
|-.+|-- .|| ||||=|= |||-==-|.-|+|+|+||. |.|-|| |.-.+||
T Consensus 211 M~aGKv~--Vv~GYGdVGKgCaqaLkg~ga~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~ 288 (434)
T KOG1370 211 MIAGKVA--VVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHF 288 (434)
T ss_pred EECCCEE--EEECCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEEEEHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 4525179--99635764566899975068689996058068999875253754688764127789975687312339999
Q ss_pred HHHHHH-----HCCCCCCEEEEC
Q ss_conf 999986-----067898335410
Q gi|254780947|r 692 RLFSER-----FQGFSVRIASIS 709 (1187)
Q Consensus 692 ~tf~~R-----f~~~pv~i~~ls 709 (1187)
+..++- +..|-+.|++..
T Consensus 289 ~~mk~d~IvCN~Ghfd~EiDv~~ 311 (434)
T KOG1370 289 DQMKNDAIVCNIGHFDTEIDVKW 311 (434)
T ss_pred HHCCCCCEEECCCCCCCEEEHHH
T ss_conf 74767737852565430110433
No 348
>PRK07831 short chain dehydrogenase; Provisional
Probab=59.60 E-value=11 Score=16.38 Aligned_cols=58 Identities=19% Similarity=0.000 Sum_probs=37.9
Q ss_pred CCEEEECCCCCCHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 86089803765227999999-98629989999299899999999999857998099857
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~-l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
++.+.++|..|+.-.+.+|. |++.+..+++.-.+.+.+.+..+++..-.+...+..++
T Consensus 16 gKvalVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~ 74 (261)
T PRK07831 16 GKVVVVTAAAGTGIGSATARRALEEGADVVISDIHERRLGETADELAAELGLGRVEGVV 74 (261)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98499949996478999999999879989998087777899999999843877289997
No 349
>PRK00654 glgA glycogen synthase; Provisional
Probab=59.21 E-value=11 Score=16.33 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Q ss_conf 85899999999998679829999589458999
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQH 423 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eR 423 (1187)
+-++.+++-+....+.+.+.+++...+...+.
T Consensus 306 KG~~ll~~a~~~~~~~~~~~vi~G~G~~~~~~ 337 (476)
T PRK00654 306 KGLDLVLEALDEILEQGGQLVLLGTGDPELEE 337 (476)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf 78899999999999709989999459789999
No 350
>pfam09572 RE_XamI XamI restriction endonuclease. This family includes the XamI (recognizes GTCGAC but cleavage site unknown) restriction endonuclease.
Probab=58.67 E-value=11 Score=16.27 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHCCCEECCCCC-------CCCEEEEECCEE
Q ss_conf 999999999982884554521-------783165457475
Q gi|254780947|r 142 DMAKVIEKLETNGFQRVNAVY-------KVGEYAVRGGIL 174 (1187)
Q Consensus 142 d~~~L~~~Lv~~GY~Rv~~Ve-------~~GEFAvRGgII 174 (1187)
-.+.+.++|.+.||+++.... .||.|+.|=.+.
T Consensus 125 Ql~~I~~~L~A~Gy~k~~~~~~~~~~~m~Pgt~sFr~nv~ 164 (251)
T pfam09572 125 QLAAIKSWLEARGYTQLATGAALPVNSMPPGTFSFRRNVP 164 (251)
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCHHHCCCCCCEEEEECC
T ss_conf 8999999999669656467788745334987624667233
No 351
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=58.46 E-value=11 Score=16.24 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=20.9
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 6798299995894589999986776
Q gi|254780947|r 406 QKGIKTIISASSQGALQHLIHLIES 430 (1187)
Q Consensus 406 k~g~rViI~a~s~~~~eRL~elL~e 430 (1187)
..+.+|.+++.|-+-+.||.|-+..
T Consensus 192 ~~~l~I~LaAPTGKAAaRL~Esi~~ 216 (607)
T PRK10875 192 GERCRIRLAAPTGKAAARLTESLGK 216 (607)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 8997089988228999999999987
No 352
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=57.85 E-value=11 Score=16.17 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 9829999589458999998677648873
Q gi|254780947|r 408 GIKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 408 g~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
+.+++.+| .-+.-+++.+.|++.|+..
T Consensus 221 ~~~v~a~s-GIanP~~F~~~L~~~g~~i 247 (318)
T pfam02606 221 GKRVLAFA-GIGNPQRFFDTLRALGLEV 247 (318)
T ss_pred CCEEEEEE-ECCCHHHHHHHHHHCCCEE
T ss_conf 98489999-6478799999999769878
No 353
>PRK08263 short chain dehydrogenase; Provisional
Probab=57.72 E-value=12 Score=16.16 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf 6089803765227999999986299899992998999999999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKI 58 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~d 58 (1187)
+-+.++|...+--.-++-.+++.+-.+++...|.....++.+.
T Consensus 4 Kv~lITGassGIG~a~A~~la~~G~~Vv~~~R~~~~l~~l~~~ 46 (275)
T PRK08263 4 KVWFITGASRGFGREWTEAALERGDRVVATARDTATLADLAER 46 (275)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 9899946743999999999998799899997989999999997
No 354
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=57.66 E-value=12 Score=16.15 Aligned_cols=29 Identities=31% Similarity=0.269 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHH-HHHHCCCCEEEEECCHH
Q ss_conf 376522799999-99862998999929989
Q gi|254780947|r 22 PVIDGTEGFILA-EIARLGLSLVYICSDER 50 (1187)
Q Consensus 22 Gl~gs~~allla-~l~~~~rpilvI~~d~~ 50 (1187)
|+.-+.-+..+| .+++.++++++|=-|.+
T Consensus 10 GvGKtt~~~~la~~~a~~g~~vl~iD~DpQ 39 (104)
T cd02042 10 GVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 876899999999999977992999977988
No 355
>KOG2126 consensus
Probab=57.58 E-value=7.4 Score=17.62 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=24.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 9977624889889999999999999999869759996098599
Q gi|254780947|r 1066 EEMVDRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGII 1108 (1187)
Q Consensus 1066 ~el~drfG~~P~~~~~l~~~~~lk~~~~~~~i~~i~~~~~~~~ 1108 (1187)
.|..++ ++=.-.-+|+....+....+++-|.+++.+...+-
T Consensus 738 ~~f~~~--~~~~v~~~lls~~~ff~~gh~~~i~s~~w~~afv~ 778 (895)
T KOG2126 738 AEFVEL--PLYVVTLGLLSFSMFFATGHQAAISSLDWNAAFVG 778 (895)
T ss_pred HHHHCC--CCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 887527--00100067767999998377013578876522025
No 356
>KOG0078 consensus
Probab=57.55 E-value=7.3 Score=17.68 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=13.8
Q ss_pred ECCCCCCCEEEECCCCEEEEE
Q ss_conf 069888726886348722101
Q gi|254780947|r 177 YEPTKKYPVRLDFFGNTIDSL 197 (1187)
Q Consensus 177 Fp~~~~~PiRIEFFGDeIESI 197 (1187)
|.+.+-..+=|||+...|+.=
T Consensus 37 f~~~~~sTiGIDFk~kti~l~ 57 (207)
T KOG0078 37 FNTSFISTIGIDFKIKTIELD 57 (207)
T ss_pred CCCCCCCEEEEEEEEEEEEEC
T ss_conf 767765158788788899838
No 357
>PRK07429 phosphoribulokinase; Provisional
Probab=57.35 E-value=12 Score=16.11 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=24.3
Q ss_pred HCCCCEE--EECCCCCCHHHHHHHHHHHC-C-CCEEEEECCHH
Q ss_conf 1488608--98037652279999999862-9-98999929989
Q gi|254780947|r 12 EKYCKKI--TLSPVIDGTEGFILAEIARL-G-LSLVYICSDER 50 (1187)
Q Consensus 12 ~k~~~~i--~l~Gl~gs~~allla~l~~~-~-rpilvI~~d~~ 50 (1187)
+...+++ -+.|-+||+++-++..+.+. + ..+.+|+.|+.
T Consensus 3 ~m~~rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdY 45 (331)
T PRK07429 3 SMPDRPVIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDY 45 (331)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8999998999857887789999999999838887799947867
No 358
>PRK07832 short chain dehydrogenase; Provisional
Probab=57.34 E-value=12 Score=16.11 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=34.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 60898037652279999999862998999929989999999999985799
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPD 65 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~ 65 (1187)
+++.++|...+--.-++-+|++.+..++++..|+...+++.+++....++
T Consensus 1 K~alITGassGIG~a~A~~la~~Ga~v~l~~r~~~~l~~~~~~l~~~g~~ 50 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGT 50 (272)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 97999472019999999999988998999989889999999999845897
No 359
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847 This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=57.33 E-value=6.4 Score=18.14 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999998679829999589
Q gi|254780947|r 395 DKFLSHVAQQAQKGIKTIISASS 417 (1187)
Q Consensus 395 ~~L~~~I~~~~k~g~rViI~a~s 417 (1187)
..|.+.+.---|.-..+++|.+|
T Consensus 176 ~YL~~kL~~~GK~p~~TlVCGDS 198 (257)
T TIGR01485 176 QYLLQKLKIEGKQPSQTLVCGDS 198 (257)
T ss_pred HHHHHHHHHCCCCCCCCEEECCC
T ss_conf 99999998438897771785884
No 360
>KOG0152 consensus
Probab=57.10 E-value=12 Score=16.08 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=4.1
Q ss_pred HHHHHHHHHCC
Q ss_conf 99998677648
Q gi|254780947|r 422 QHLIHLIESHG 432 (1187)
Q Consensus 422 eRL~elL~e~g 432 (1187)
..+..+|....
T Consensus 374 ~~f~~~l~~~~ 384 (463)
T KOG0152 374 NNFRNLLKSLN 384 (463)
T ss_pred HHHHHHHHHHC
T ss_conf 76789999841
No 361
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=57.08 E-value=12 Score=16.08 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=17.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 8608980376522799999998
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIA 36 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~ 36 (1187)
++-..+.|.+|++|+.++.+++
T Consensus 19 G~ItEi~G~~gsGKT~l~lqla 40 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 8399999999998999999999
No 362
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.03 E-value=12 Score=16.08 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=100.1
Q ss_pred EECCCCCCHH-HHHHHHHHHHHCCCCEEEEEECHH--HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 3166543248-999999987511275499982436--6555899999986067898335410666302567777531225
Q gi|254780947|r 651 ICGDVGFGKT-EIALRAAFIAVMNGLQVAVIAPTT--LLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEG 727 (1187)
Q Consensus 651 iCGDVGfGKT-EVA~RAafkav~~gkQvavlvPTT--iLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G 727 (1187)
+.|=-|-||| =+|==||-.+...||.||++.=-| |=|..-.+||.+-+ +.|+.|.. ++++-++.+.. .+
T Consensus 228 lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il-~iPv~vv~-----~~~el~~al~~--~~ 299 (432)
T PRK12724 228 FVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTM-GMPFYPVK-----DIKKFKETLAR--DG 299 (432)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEE-----CHHHHHHHHHH--CC
T ss_conf 989999888999999999999974992799952665377999999999985-99459951-----89999999985--69
Q ss_pred CCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC------CCC-EEEEECCCCCHHHHHHHHCCCCCCE
Q ss_conf 760898520654278520236569972223300888998863167------884-8999535340889999712225412
Q gi|254780947|r 728 QVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHT------GVH-VLTLSATPIPRTLQLAITGVRELSL 800 (1187)
Q Consensus 728 ~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~------~vd-vLtlsATPIPRTL~msl~g~rd~S~ 800 (1187)
.==|+|-|--.=++| ..|=+.||.+-. +++ .|.||||-=.|+|.-..-.-..+.
T Consensus 300 ~DlILIDTAGrS~rd------------------~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~- 360 (432)
T PRK12724 300 SELILIDTAGYSHRN------------------LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLN- 360 (432)
T ss_pred CCEEEEECCCCCCCC------------------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCC-
T ss_conf 999999299989789------------------9999999999986366788517999978899899999999842699-
Q ss_pred EECCCCCCCCEEEEEEECCHHHHHHHHHHH-HHHCCEEEEEECC
Q ss_conf 201578877537999857978989999989-8718859998264
Q gi|254780947|r 801 ISMPPINRIACRTSISIFDPLVVRETLMRE-YYRGGQSFYVCPR 843 (1187)
Q Consensus 801 i~tpP~~R~~v~T~v~~~~~~~i~~ai~rE-l~RgGQvf~v~nr 843 (1187)
.++. |-| .-|+..---+|..= ..-+=.+-|+-|=
T Consensus 361 -----~~~l-IfT---KLDET~s~G~ilni~~~~~~PisYiT~G 395 (432)
T PRK12724 361 -----YRRI-LLT---KLDEADFLGSFLELADTYSKSFTYLSVG 395 (432)
T ss_pred -----CCEE-EEE---ECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf -----9849-997---1227798669999999988986998089
No 363
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=56.84 E-value=12 Score=16.05 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----CCHHHHHH
Q ss_conf 888999999875089989999999997762488-----98899999
Q gi|254780947|r 1042 INLRLSLYRRLGNITDHADISHFKEEMVDRFGP-----LPIEVIHL 1082 (1187)
Q Consensus 1042 ~~~rl~~Y~ri~~~~~~~~~~~~~~el~drfG~-----~P~~~~~l 1082 (1187)
.++|...|.++..-+|+.++-+ -|.+|||+ +|-...++
T Consensus 64 ~DlR~~V~e~l~eGkS~~qIid---~mVaRYG~FVly~Pp~~~~T~ 106 (153)
T COG3088 64 RDLRHQVYELLQEGKSDQQIID---YMVARYGEFVLYKPPLTGQTL 106 (153)
T ss_pred HHHHHHHHHHHHCCCCHHHHHH---HHHHHHCCEEEECCCCCHHHH
T ss_conf 9999999999985786899999---999853463432699743589
No 364
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=56.44 E-value=10 Score=16.56 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999986776
Q gi|254780947|r 421 LQHLIHLIES 430 (1187)
Q Consensus 421 ~eRL~elL~e 430 (1187)
.+++.+++..
T Consensus 269 l~~~v~~~s~ 278 (337)
T cd01302 269 LETLVEILSE 278 (337)
T ss_pred HHHHHHHHHH
T ss_conf 9999999978
No 365
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=56.20 E-value=12 Score=15.98 Aligned_cols=54 Identities=24% Similarity=0.426 Sum_probs=37.3
Q ss_pred EEEECHHHCCC-CHHHHH---------HHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 67625023588-604553---------2210356767369999668888898899999999972
Q gi|254780947|r 908 MIVQRADMFGL-AQLYQL---------RGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 908 iii~~ad~~GL-aqlyQl---------rGRVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
++|.+-|+-|. ++.=++ .=+|||..+...||.++.-+..+++++.+.|+.+...
T Consensus 2 Lii~~~D~PGvIg~v~~~Lg~~~INIa~m~l~R~~~g~~A~~vi~vD~~v~~~~l~~i~~~~~V 65 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGI 65 (73)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 8998169899289999999870977888432576899878999990899999999999759895
No 366
>PRK09165 replicative DNA helicase; Provisional
Probab=56.05 E-value=12 Score=15.96 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=10.1
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 940974199999999998
Q gi|254780947|r 135 IQSKDQIDMAKVIEKLET 152 (1187)
Q Consensus 135 L~vGd~id~~~L~~~Lv~ 152 (1187)
...|..+|+-.+...|..
T Consensus 58 ~~~g~~iD~itv~~~L~~ 75 (484)
T PRK09165 58 IRKGKLATPVTLKTFLEN 75 (484)
T ss_pred HHCCCCCCHHHHHHHHHH
T ss_conf 976999879899999864
No 367
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=56.03 E-value=9.1 Score=16.94 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC-CCCEEEEECC--------HHHHHHHHHHHH
Q ss_conf 8860898037652279999999862-9989999299--------899999999999
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIARL-GLSLVYICSD--------ERILINLKKILT 60 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~~-~rpilvI~~d--------~~~A~~l~~dL~ 60 (1187)
..++|..-|-+|-+++=++-.|++. +.|.+=|=.+ -++.+.+-.||-
T Consensus 46 ~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfTEVGYVGrdVeSmvRDL~ 101 (463)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLV 101 (463)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCEECCCHHHHHHHHH
T ss_conf 87430432788985447999999984489146664100110214241003678789
No 368
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=56.03 E-value=12 Score=15.96 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=69.5
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECH---HHHHC
Q ss_conf 992998999999999998579980998572246701004899899999999999984124468876999566---78523
Q gi|254780947|r 44 YICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTV---SAVMC 120 (1187)
Q Consensus 44 vI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~---~ALlq 120 (1187)
.++-+...-.+|.+.|+-|.+....++||+= ...-+.++..|.. +. .+|+.-- .++..
T Consensus 50 l~~G~~~~h~~LE~~lA~f~g~e~allf~sG--------------y~AN~~~i~al~~----~~-d~i~~D~l~HaSi~d 110 (370)
T PRK05937 50 AILGPSSLLDDLEHKIAHFHGAPEAFIVPSG--------------YMANLGLCAHLSS----VT-DYVLWDEQVHISVVY 110 (370)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCH--------------HHHHHHHHHHCCC----CC-CEEEEECCCHHHHHH
T ss_conf 2627869999999999998699939998766--------------8899999996089----99-989996306199999
Q ss_pred CCCCHHHHHCCEEEEECCCCCCHHHHHHHHH---HCCCEECCCCCCCCEEEEECCEEEEECC---CCCCCEEEECCCCEE
Q ss_conf 6998668851548994097419999999999---8288455452178316545747573069---888726886348722
Q gi|254780947|r 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLE---TNGFQRVNAVYKVGEYAVRGGILDVYEP---TKKYPVRLDFFGNTI 194 (1187)
Q Consensus 121 klpp~~~l~~~~l~L~vGd~id~~~L~~~Lv---~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~---~~~~PiRIEFFGDeI 194 (1187)
-+ ..-......++-+ |++.|.+.|. ..++.|+=.|.+ |=||.-|+|-|+=-. ..++-.+ ++=||-
T Consensus 111 G~---rls~a~~~~f~Hn---d~~~Le~~L~~~~~~~~~~~~iv~e-gVfSMdGdiapL~~l~~l~~~y~a~--l~vDeA 181 (370)
T PRK05937 111 SL---SVISGKHQSFRHN---DLDHLESLLESCRAVSFGRIFIFVC-SVYSFKGTLAPLEQIIALSKKYHAH--LIVDEA 181 (370)
T ss_pred HH---HHCCCCEEEECCC---CHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCCHHHHHHHHHHCCCE--EEEECC
T ss_conf 99---8649986996899---9899999998533117885599994-0566778755899999999981978--997330
Q ss_pred EEEEEEEC
Q ss_conf 10154513
Q gi|254780947|r 195 DSLRLFDS 202 (1187)
Q Consensus 195 ESIR~FDp 202 (1187)
-++=.+-+
T Consensus 182 H~~Gv~G~ 189 (370)
T PRK05937 182 HAMGIFGD 189 (370)
T ss_pred HHCCCCCC
T ss_conf 00043379
No 369
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=56.03 E-value=12 Score=16.02 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=57.5
Q ss_pred CEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHH
Q ss_conf 608980376522799999998----6299899992998999999999998579980998572246701004899899999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTR 91 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~e 91 (1187)
--+-++|++||+++-++..+. +.+.+++++--|+-+. .|.++ +.|+.. +......
T Consensus 3 ~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~--------~l~~d-----------lgys~~--~R~~n~~ 61 (157)
T pfam01583 3 CTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRH--------GLNKD-----------LGFSEE--DRTENIR 61 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHC--------CCCCC-----------CCCCHH--HHHHHHH
T ss_conf 89998898999999999999999997599779976887750--------12577-----------798989--9999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHCCCC--CHHHHHC-CEEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 99999998412446887699956678523699--8668851-548994097419999999999828845
Q gi|254780947|r 92 RLSCISNLVSFNSSKETIIVLTTVSAVMCRSV--NIMSIKD-YKLSIQSKDQIDMAKVIEKLETNGFQR 157 (1187)
Q Consensus 92 Rl~~L~~L~~~~~~~~~~IIVtt~~ALlqklp--p~~~l~~-~~l~L~vGd~id~~~L~~~Lv~~GY~R 157 (1187)
|+.-|.+++.. ...+||+++-+.....- -++.+.. ..+.+- =..+++.+.++=..-=|.+
T Consensus 62 r~~~lak~l~~----~g~~VIvs~isp~~~~R~~~r~~~~~~~y~EIy--v~~~le~~~~RD~KglY~k 124 (157)
T pfam01583 62 RIAEVAKLFAD----AGLIVITSFISPYRADRDMARELHEDGKFIEVF--VDTPLEVCEQRDPKGLYKK 124 (157)
T ss_pred HHHHHHHHHHC----CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEE--ECCCHHHHHHCCCHHHHHH
T ss_conf 99999999842----896588721578999999999864788579999--6386788775162106778
No 370
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=55.76 E-value=12 Score=15.93 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHHC-CCEEEEEECCHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 999867-98299995894589999986776-----48873323452245520466847999810446874
Q gi|254780947|r 402 AQQAQK-GIKTIISASSQGALQHLIHLIES-----HGFKKIKKINTLTEINSLLKEEIAAVILPINQGFE 465 (1187)
Q Consensus 402 ~~~~k~-g~rViI~a~s~~~~eRL~elL~e-----~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~~GF~ 465 (1187)
..+.+. +..|+|+=.|..++++|.+.+.. +|-......+.. ....|.+.+++-..+-|..
T Consensus 138 ~~L~~~t~~~~~i~NRT~~ka~~La~~~~~kln~~~G~~~~~~~~~~----~l~~G~~DlIINATs~G~~ 203 (286)
T TIGR00507 138 LELLKATDCNVIIANRTVEKAEELAERFQRKLNKKYGEIQAFSLDEV----PLHKGKVDLIINATSAGMS 203 (286)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC----CCCCCCEEEEEECCCCCCC
T ss_conf 99986009978998287789999999989885342485365211335----5557856799854677888
No 371
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=55.64 E-value=12 Score=15.91 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEE
Q ss_conf 1548994097419999999999828845545217831654
Q gi|254780947|r 130 DYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAV 169 (1187)
Q Consensus 130 ~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAv 169 (1187)
.+.+.+..+..-....+.+.+...|+.|+-.+.....|..
T Consensus 111 ~~~F~~~~~~~~~~~~~~~~~~~~g~kkvavl~~d~~~g~ 150 (336)
T cd06326 111 RNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQDDAFGK 150 (336)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 8568967783899999999999709975999935875889
No 372
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=55.02 E-value=13 Score=15.84 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=37.2
Q ss_pred EEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEE
Q ss_conf 999566785236998668851548994097419999999999828845545217831654
Q gi|254780947|r 110 IVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAV 169 (1187)
Q Consensus 110 IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAv 169 (1187)
|.+.|..+-...+..+..+ .+.+.....+..--..+.+.+..+|+.|+..+.+..+|-.
T Consensus 91 ip~is~~~t~~~l~~~~~~-~~~~R~~~~d~~~~~a~~~l~~~~gw~~vail~~~~~~g~ 149 (350)
T cd06366 91 VPVLSFAATSPSLSSRLQY-PYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGS 149 (350)
T ss_pred CEEECCCCCCCCCCCCCCC-CEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH
T ss_conf 1250355588410224678-6589816886788999999999769969999997680048
No 373
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=54.99 E-value=13 Score=15.84 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=7.3
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 4431665432489999
Q gi|254780947|r 649 RLICGDVGFGKTEIAL 664 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~ 664 (1187)
=|+||--|-|||-.|.
T Consensus 39 lLf~GPpG~GKTt~A~ 54 (337)
T PRK12402 39 LVVYGPSGSGKTAAVR 54 (337)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9888929848999999
No 374
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=54.91 E-value=13 Score=15.83 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=14.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEE
Q ss_conf 5489940974199999999998288455452178316
Q gi|254780947|r 131 YKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEY 167 (1187)
Q Consensus 131 ~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEF 167 (1187)
....|.+|..- .+.|..-|.+.-...|--|||
T Consensus 81 ~~~~isTg~~~-----lD~lLgGGi~~g~ITEi~Ge~ 112 (318)
T PRK04301 81 SIGKITTGSKE-----LDELLGGGIETQSITEFYGEF 112 (318)
T ss_pred CCCCCCCCCHH-----HHHHCCCCCCCCEEEEEECCC
T ss_conf 47824788878-----880547983367078886688
No 375
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase; InterPro: IPR013371 The genes encoding proteins in this entry are largely adjacent to genes involved in the biosynthesis of threonine (aspartate kinase, homoserine dehydrogenase and threonine synthase) in genomes which are lacking any other known homoserine kinase, and in which the presence of a homoserine kinase would indicate a complete pathway for the biosynthesis of threonine. These proteins are homologous to the archaeal form of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase and form part of a superfamily of metalloenzymes including phosphopentomutases, alkaline phosphatases and sulphatases. The proposal that these proteins encode a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate, resulting in kinase activity.; GO: 0004619 phosphoglycerate mutase activity.
Probab=54.88 E-value=2.1 Score=21.93 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=38.8
Q ss_pred CCCEEEECCCCCCCCCCCCCEEEEEECCC-----------CEEEEEHHHHHHHHHHCC
Q ss_conf 54233112310145666663599998699-----------879966675211110036
Q gi|254780947|r 514 HGIGRFVRLYSIEVSGTFHDCLELHYADN-----------AKLFVPVENIDLISRYST 560 (1187)
Q Consensus 514 HGIGrY~GLe~l~v~G~~~DyL~IeYa~~-----------DkLYVPv~~l~lIskYg~ 560 (1187)
-|||+|.||+.++|.|.+ .||==-|.|. |-+||=||--|-.+==|+
T Consensus 276 kGlG~~aGl~~i~V~GAT-GYLDTNY~GKv~~A~~AL~~~DFV~~HvEApDEAGHeGd 332 (431)
T TIGR02535 276 KGLGIYAGLEVIEVEGAT-GYLDTNYEGKVRAALEALEEYDFVVIHVEAPDEAGHEGD 332 (431)
T ss_pred HHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCC
T ss_conf 999998088852136634-775667557999999865318838999726864476468
No 376
>TIGR03138 QueF 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=54.85 E-value=13 Score=15.82 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=6.3
Q ss_pred CCCEECCHHHHHHHHH
Q ss_conf 7732179999999999
Q gi|254780947|r 219 LSEVMLTSQNISRFRE 234 (1187)
Q Consensus 219 a~E~il~~e~i~~fr~ 234 (1187)
.+..++...+++-+.+
T Consensus 76 ~S~~iVESKSlKLYLN 91 (275)
T TIGR03138 76 TSPNLIESKSFKLYLN 91 (275)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 9975000135899987
No 377
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=54.68 E-value=9.5 Score=16.82 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=15.1
Q ss_pred EEECCCCCCHHHHHHHHHHH-CCCCEEEE
Q ss_conf 89803765227999999986-29989999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIAR-LGLSLVYI 45 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~-~~rpilvI 45 (1187)
+.|-|-+|.+|+.++.++++ .+++..-|
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~i 30 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRRI 30 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 87898998769999999999959981688
No 378
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=54.36 E-value=13 Score=15.77 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=15.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEECCCCCC
Q ss_conf 548994097419999999999828845545217
Q gi|254780947|r 131 YKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYK 163 (1187)
Q Consensus 131 ~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~ 163 (1187)
+.+............+.+++.+.+..++-.+..
T Consensus 108 ~~f~~~~~~~~~~~~~~~~~~~~~~kkvai~~~ 140 (333)
T cd06331 108 NVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGS 140 (333)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 879960780888899999999737987999944
No 379
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=54.25 E-value=13 Score=15.75 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=10.1
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHHC
Q ss_conf 99848888874489---9999998760
Q gi|254780947|r 618 FIKRFPHVETEDQE---KAIDAVIQDL 641 (1187)
Q Consensus 618 Fe~~FpyeET~DQ~---~AI~eV~~Dm 641 (1187)
|.++|---|+-+.+ .++.+|+.|+
T Consensus 416 ~a~~f~n~e~~~~~l~~e~~~~v~edi 442 (487)
T PRK13655 416 FAARFFNPEVAEKLLDEETVKEVKEDI 442 (487)
T ss_pred HHHHHCCHHHHHHHCCHHHHHHHHHHH
T ss_conf 999833988888735799999999999
No 380
>KOG0399 consensus
Probab=53.98 E-value=13 Score=15.72 Aligned_cols=101 Identities=27% Similarity=0.349 Sum_probs=65.4
Q ss_pred CCCCCCEE-EEEEECCHHHHHHHHHHHHHHCCEE-------------------EE----EECCCCCHHHHHHH---HHHH
Q ss_conf 78877537-9998579789899999898718859-------------------99----82644692889999---9861
Q gi|254780947|r 805 PINRIACR-TSISIFDPLVVRETLMREYYRGGQS-------------------FY----VCPRLSDLEKCYTF---LQSE 857 (1187)
Q Consensus 805 P~~R~~v~-T~v~~~~~~~i~~ai~rEl~RgGQv-------------------f~----v~nrv~~i~~~~~~---l~~l 857 (1187)
-..|.-|. +|.+--|+-.||-|-----.-|||. =. -|..|-+||..|.. |+..
T Consensus 1016 ASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLIyDLk~a 1095 (2142)
T KOG0399 1016 ASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLIYDLKCA 1095 (2142)
T ss_pred HCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 61346665111047156654775179999788787614668999863688998757899866623488999999886506
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC---CCEECCCCCCCCCEEEEECHH------------------HC
Q ss_conf 654648886134674789999999963887579761---020036332233266762502------------------35
Q gi|254780947|r 858 VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLST---SIVESGLDLPKANTMIVQRAD------------------MF 916 (1187)
Q Consensus 858 ~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~T---tIiEsGlDip~aNTiii~~ad------------------~~ 916 (1187)
-|.|||.|- ||+- -||-||+--.||.-|.|-.-| -+
T Consensus 1096 NP~ArVSVK-----------------------LVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWEL 1152 (2142)
T KOG0399 1096 NPRARVSVK-----------------------LVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWEL 1152 (2142)
T ss_pred CCCCEEEEE-----------------------EEECCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 987603799-----------------------974056126651101366766998146788676654123347987310
Q ss_pred CCCHHHH------HHHHC
Q ss_conf 8860455------32210
Q gi|254780947|r 917 GLAQLYQ------LRGRV 928 (1187)
Q Consensus 917 GLaqlyQ------lrGRV 928 (1187)
|||.-|| |||||
T Consensus 1153 GlAEThQtLv~NdLR~rv 1170 (2142)
T KOG0399 1153 GLAETHQTLVLNDLRGRV 1170 (2142)
T ss_pred CCHHHHHHHHHCCCCCCE
T ss_conf 404665677642613027
No 381
>KOG1969 consensus
Probab=53.38 E-value=13 Score=15.76 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=42.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 44316654324899999998751127549998243665558999999860678983354106663025677775312257
Q gi|254780947|r 649 RLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQ 728 (1187)
Q Consensus 649 RLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~ 728 (1187)
-|+||=-|-|||-+|-=+ |-++|+-|.=+ --|-=||+..-++.+++
T Consensus 329 lLL~GppGlGKTTLAHVi---AkqaGYsVvEI--------------------------NASDeRt~~~v~~kI~~----- 374 (877)
T KOG1969 329 LLLCGPPGLGKTTLAHVI---AKQAGYSVVEI--------------------------NASDERTAPMVKEKIEN----- 374 (877)
T ss_pred EEEECCCCCCHHHHHHHH---HHHCCCEEEEE--------------------------CCCCCCCHHHHHHHHHH-----
T ss_conf 875368878724799999---98628548873--------------------------25554347889999999-----
Q ss_pred CEEEEECHHHHCCCCCCCCCCEEEEECH
Q ss_conf 6089852065427852023656997222
Q gi|254780947|r 729 VDIVIGTHALLNPKITFANLGLIIIDEE 756 (1187)
Q Consensus 729 idiviGTH~ll~~~v~f~~LgLliiDEE 756 (1187)
+|-+|+.|+-|-+-+ -|||||=
T Consensus 375 ---avq~~s~l~adsrP~---CLViDEI 396 (877)
T KOG1969 375 ---AVQNHSVLDADSRPV---CLVIDEI 396 (877)
T ss_pred ---HHHHCCCCCCCCCCC---EEEEECC
T ss_conf ---886411225688863---5998424
No 382
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=53.32 E-value=9.3 Score=16.87 Aligned_cols=16 Identities=56% Similarity=0.927 Sum_probs=8.4
Q ss_pred EEECCCCCCHHHHHHH
Q ss_conf 4316654324899999
Q gi|254780947|r 650 LICGDVGFGKTEIALR 665 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~R 665 (1187)
||+|+-|-||+|.|+.
T Consensus 18 Li~G~SG~GKS~lal~ 33 (149)
T cd01918 18 LITGPSGIGKSELALE 33 (149)
T ss_pred EEECCCCCCHHHHHHH
T ss_conf 9987899998999999
No 383
>PHA02518 ParA-like protein; Provisional
Probab=53.21 E-value=13 Score=15.64 Aligned_cols=29 Identities=17% Similarity=0.013 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHH-HHHHCCCCEEEEECCHH
Q ss_conf 376522799999-99862998999929989
Q gi|254780947|r 22 PVIDGTEGFILA-EIARLGLSLVYICSDER 50 (1187)
Q Consensus 22 Gl~gs~~allla-~l~~~~rpilvI~~d~~ 50 (1187)
|+.-+.-|.-+| .|++.++.+++|=-|.+
T Consensus 11 GvGKTT~a~nLA~~la~~G~~VlliD~DpQ 40 (211)
T PHA02518 11 GAGKTTVATNLASWLHADGHKVLLVDLDPQ 40 (211)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 974999999999999978994899977999
No 384
>pfam04477 consensus
Probab=53.19 E-value=13 Score=15.63 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=10.9
Q ss_pred HHHHCCCCCCHH---HHHHHHHHHHHCC
Q ss_conf 998488888744---8999999987605
Q gi|254780947|r 618 FIKRFPHVETED---QEKAIDAVIQDLS 642 (1187)
Q Consensus 618 Fe~~FpyeET~D---Q~~AI~eV~~Dme 642 (1187)
|.++|---|+.+ ...++++|+.|+.
T Consensus 422 ~a~~f~n~e~~~~~~~~~~~k~v~edi~ 449 (498)
T pfam04477 422 FAARFLNPEVLKLLKDEEAIKEVKEDID 449 (498)
T ss_pred HHHHHCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9998339878876257899999999999
No 385
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=53.14 E-value=13 Score=15.70 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=5.0
Q ss_pred CEEEECCCCC
Q ss_conf 8099857224
Q gi|254780947|r 66 IRVIIFPAWD 75 (1187)
Q Consensus 66 ~~V~~FP~~E 75 (1187)
-.|+++|.-.
T Consensus 67 Y~Vlfl~GGa 76 (381)
T PRK03080 67 YEVGIVPGSD 76 (381)
T ss_pred CEEEEECCCH
T ss_conf 4799967846
No 386
>KOG0060 consensus
Probab=52.99 E-value=6.3 Score=18.20 Aligned_cols=15 Identities=13% Similarity=-0.088 Sum_probs=8.4
Q ss_pred HCCCCCCCCHHHHHH
Q ss_conf 015677878467898
Q gi|254780947|r 603 HSVPPLMVSQDLYSQ 617 (1187)
Q Consensus 603 ~~g~~f~~d~~~~~e 617 (1187)
.-|..-+.+-+|++.
T Consensus 556 ~ggld~~~~~dW~dv 570 (659)
T KOG0060 556 EGGLDQQVDWDWMDV 570 (659)
T ss_pred HCCCCCHHHCCHHHH
T ss_conf 578882222057763
No 387
>PRK10329 glutaredoxin-like protein; Provisional
Probab=52.98 E-value=7.7 Score=17.51 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=37.5
Q ss_pred EEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEEC
Q ss_conf 99956678523699866885154899409741999999999982884554521783165457
Q gi|254780947|r 110 IVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRG 171 (1187)
Q Consensus 110 IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRG 171 (1187)
|.|=|-..+.|--..+.+|.++-+.+..=+-=.-.+.++.|.++||+.++.|.. |+.+.-|
T Consensus 3 ITVYTkp~C~qC~aTKr~L~~~gI~y~~vdi~~dpea~~~vk~~G~~q~PVV~~-~~~~wsG 63 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAADTLRAQGFRQLPVVIA-GDLSWSG 63 (81)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEE-CCCEECC
T ss_conf 999769998247989999998799429985899999999999769855998996-9954436
No 388
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=52.87 E-value=14 Score=15.60 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=21.1
Q ss_pred HHCCCCCEEECCCCCEEEECCCCCCC--CCCCCCEEE
Q ss_conf 40323511203554233112310145--666663599
Q gi|254780947|r 502 NIEEGAIIVHAEHGIGRFVRLYSIEV--SGTFHDCLE 536 (1187)
Q Consensus 502 eL~~GDyVVH~dHGIGrY~GLe~l~v--~G~~~DyL~ 536 (1187)
+=.||+++.|.--..=.|+|+-.++. .|...-|..
T Consensus 292 ~EaPG~~~~~~G~~~K~yrGMgS~~Am~~g~~~ry~~ 328 (404)
T PRK06843 292 KESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQ 328 (404)
T ss_pred CCCCCCEEEECCEEEEEEECCCCHHHHHCCCCCCCCC
T ss_conf 6699737857894878873475399986447100023
No 389
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=52.62 E-value=14 Score=15.57 Aligned_cols=14 Identities=0% Similarity=-0.204 Sum_probs=6.6
Q ss_pred EEECCCCCCHHHHH
Q ss_conf 89803765227999
Q gi|254780947|r 18 ITLSPVIDGTEGFI 31 (1187)
Q Consensus 18 i~l~Gl~gs~~all 31 (1187)
..++|-.|.++..+
T Consensus 29 yLF~Gp~G~GK~~~ 42 (313)
T PRK05564 29 SLIVGEDGIGKSIL 42 (313)
T ss_pred EEEECCCCCCHHHH
T ss_conf 43279998509999
No 390
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.53 E-value=14 Score=15.56 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=98.6
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHCCCCE---EEEEECHH--HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 431665432489-999999875112754---99982436--655589999998606789833541066630256777753
Q gi|254780947|r 650 LICGDVGFGKTE-IALRAAFIAVMNGLQ---VAVIAPTT--LLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKS 723 (1187)
Q Consensus 650 LiCGDVGfGKTE-VA~RAafkav~~gkQ---vavlvPTT--iLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~ 723 (1187)
.+.|=-|-|||- +|==||+-+...+++ |++++--| |=|..-.+||.+.+ +.|+.+. .++++-++.+..
T Consensus 178 ~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il-~vp~~v~-----~~~~dl~~~l~~ 251 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKAI-----ESFKDLKEEITQ 251 (388)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCEEEE-----CCHHHHHHHHHH
T ss_conf 9989988757879999999999862676773799980787588999999999997-8806985-----788999999997
Q ss_pred HCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 12257608985206542785202365699722233008889988631678848-99953534088999971222541220
Q gi|254780947|r 724 ITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV-LTLSATPIPRTLQLAITGVRELSLIS 802 (1187)
Q Consensus 724 l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk~~~~~vdv-LtlsATPIPRTL~msl~g~rd~S~i~ 802 (1187)
+++-.+ |+|-|--..++| ++ +.. ..|+-+.....++.+ |+||||-=++.+.-.+..-+.+
T Consensus 252 ~~~~D~-IlIDTAGrs~~d------------~~-~~~-el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~---- 312 (388)
T PRK12723 252 SKDFDL-VLIDTIGKSPKD------------FM-KLA-EMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPF---- 312 (388)
T ss_pred HCCCCE-EEEECCCCCCCC------------HH-HHH-HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC----
T ss_conf 249999-999589988568------------99-999-99999974189845999987989999999999984279----
Q ss_pred CCCCCCCCEEEEEEECCHHHH-HHHHHHHHHHCCEEEEEEC--CC-CCHHH
Q ss_conf 157887753799985797898-9999989871885999826--44-69288
Q gi|254780947|r 803 MPPINRIACRTSISIFDPLVV-RETLMREYYRGGQSFYVCP--RL-SDLEK 849 (1187)
Q Consensus 803 tpP~~R~~v~T~v~~~~~~~i-~~ai~rEl~RgGQvf~v~n--rv-~~i~~ 849 (1187)
+.++. |-| ..|+..- -.++.-=..-|=.+-|+-| || +||+.
T Consensus 313 --~~~~~-I~T---KlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~ 357 (388)
T PRK12723 313 --SYKTV-IFT---KLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISI 357 (388)
T ss_pred --CCCEE-EEE---ECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf --99849-998---3227898669999999988886999389968302033
No 391
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=52.45 E-value=14 Score=15.55 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=14.6
Q ss_pred HHHHHHHHHHCCCEECCCCC-CCC--EEEEECC
Q ss_conf 99999999982884554521-783--1654574
Q gi|254780947|r 143 MAKVIEKLETNGFQRVNAVY-KVG--EYAVRGG 172 (1187)
Q Consensus 143 ~~~L~~~Lv~~GY~Rv~~Ve-~~G--EFAvRGg 172 (1187)
...|++.|...||.-+-.+. ++| +|+.=|.
T Consensus 17 ~~~L~~~~~~~g~~~~~~~~~d~gq~~~~~pG~ 49 (122)
T pfam03205 17 IRKLLNYLKRRGYRVAVVKHLDHGQGEIDKPGK 49 (122)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
T ss_conf 999999999879944899989999877689986
No 392
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=52.33 E-value=6.1 Score=18.27 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q ss_conf 89458999998677648873
Q gi|254780947|r 416 SSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 416 ~s~~~~eRL~elL~e~gI~~ 435 (1187)
-++...+|+.++|...|++.
T Consensus 283 ~~~~~~~~i~~ll~~~glp~ 302 (360)
T PRK00002 283 LSEADAERIRALLERAGLPT 302 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999869897
No 393
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.22 E-value=14 Score=15.53 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=39.9
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 1488608980376522799999998629989999299899999999999857
Q gi|254780947|r 12 EKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVV 63 (1187)
Q Consensus 12 ~k~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~ 63 (1187)
+...+++.+.|..|+++|.+.+-...--+.+.|+..|...+.++.+.+....
T Consensus 16 ~~~~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~ 67 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG 67 (155)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8579999998675899999999997199822886089999999999850136
No 394
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=52.15 E-value=12 Score=16.13 Aligned_cols=14 Identities=0% Similarity=-0.280 Sum_probs=4.8
Q ss_pred EECCCCCCHHHHHH
Q ss_conf 98037652279999
Q gi|254780947|r 19 TLSPVIDGTEGFIL 32 (1187)
Q Consensus 19 ~l~Gl~gs~~alll 32 (1187)
.+.|-+|.++..++
T Consensus 7 l~~GPsGvGKT~lA 20 (168)
T pfam07724 7 LFLGPTGVGKTELA 20 (168)
T ss_pred EEECCCCCCHHHHH
T ss_conf 98898998999999
No 395
>PRK09242 tropinone reductase; Provisional
Probab=52.15 E-value=14 Score=15.52 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHH
Q ss_conf 88608980376522799999998629989999299899999999999857998099857224670100489989999999
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRL 93 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl 93 (1187)
.++...++|...+--.-++..|++.+-.++++..+.+.+.+...++..-.+..++..++. |. + +.+-+.+
T Consensus 9 ~gK~alITGgs~GIG~a~a~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~-Dv------~-~~~~~~~-- 78 (258)
T PRK09242 9 DGQTALITGASKGIGLAIARELLGLGADVLIVARDADALAQARDELAEEFPERELHGLAA-DV------S-DDEDRRA-- 78 (258)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEE-EC------C-CHHHHHH--
T ss_conf 999999948486899999999998799899996988999999999986447972999993-07------9-9999999--
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHH
Q ss_conf 999998412446887699956678
Q gi|254780947|r 94 SCISNLVSFNSSKETIIVLTTVSA 117 (1187)
Q Consensus 94 ~~L~~L~~~~~~~~~~IIVtt~~A 117 (1187)
....+.. .-++-.|+|-.+..
T Consensus 79 -~~~~~~~--~~g~iDiLVnnAG~ 99 (258)
T PRK09242 79 -ILDWVED--HWDGLHILVNNAGG 99 (258)
T ss_pred -HHHHHHH--HCCCCCEEEECCCC
T ss_conf -9999999--74999799989988
No 396
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=52.14 E-value=14 Score=15.52 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf 89999999999867982999958945899999867764
Q gi|254780947|r 394 FDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESH 431 (1187)
Q Consensus 394 l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~ 431 (1187)
+..+.+.+.+..+....|+|..++-.-.+.++..+...
T Consensus 147 m~~v~~~i~~~a~~~~pVLI~GE~GTGK~~~Ar~IH~~ 184 (469)
T PRK10923 147 MQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99999999998588997899898982699999999974
No 397
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=51.99 E-value=4 Score=19.69 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=18.6
Q ss_pred HHCCCHH-HHHHHHHHHHH-CCCEEEEEECCH
Q ss_conf 0018589-99999999986-798299995894
Q gi|254780947|r 389 ESGGRFD-KFLSHVAQQAQ-KGIKTIISASSQ 418 (1187)
Q Consensus 389 ~~~g~l~-~L~~~I~~~~k-~g~rViI~a~s~ 418 (1187)
+.+++++ .|++-++-..+ .+.+|+++|...
T Consensus 118 q~Y~~~~~~~~d~~~vl~~l~~~~i~~tAwe~ 149 (229)
T TIGR01618 118 QHYQKLDLYFLDLLTVLKELKNKNIYVTAWED 149 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 00368889999999999855898799987656
No 398
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.98 E-value=10 Score=16.56 Aligned_cols=10 Identities=0% Similarity=-0.017 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q ss_conf 7673346761
Q gi|254780947|r 275 TIFPYLSEFC 284 (1187)
Q Consensus 275 tLfDYLp~~~ 284 (1187)
.|++++|.+.
T Consensus 179 aL~~~ip~~e 188 (332)
T PRK13900 179 AALREIPAIE 188 (332)
T ss_pred HHHHCCCCCC
T ss_conf 9983589535
No 399
>PRK10985 putative hydrolase; Provisional
Probab=51.88 E-value=14 Score=15.49 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=27.6
Q ss_pred CEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEE
Q ss_conf 7699956678523699866885154899409741999999999982884554521783165457475730
Q gi|254780947|r 108 TIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVY 177 (1187)
Q Consensus 108 ~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIF 177 (1187)
-.+||...+++-. .|. ........|+.-|+...++.+... |-....+ ..| ||.=|.|+==|
T Consensus 88 ~~~vv~n~RGc~g-~~~-----~~~r~y~~g~t~Dl~~~v~~i~~~-~p~~~i~-~vG-fSlGgnillky 148 (325)
T PRK10985 88 WLGVVMHFRGCSG-EPN-----RLHRIYHSGETEDARFFLRWLQRE-FGHVPTA-AVG-YSLGGNMLACY 148 (325)
T ss_pred CEEEEEECCCCCC-CCC-----CCCCEECCCCHHHHHHHHHHHHHH-CCCCCEE-EEE-CCHHHHHHHHH
T ss_conf 9799980778999-977-----776736278568999999999987-8998578-862-01578999999
No 400
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=51.87 E-value=14 Score=15.49 Aligned_cols=11 Identities=0% Similarity=0.274 Sum_probs=3.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 52279999999
Q gi|254780947|r 25 DGTEGFILAEI 35 (1187)
Q Consensus 25 gs~~allla~l 35 (1187)
-|+-+.-+++|
T Consensus 30 qsaVS~~I~~L 40 (300)
T PRK11074 30 PSAVSYTVRQL 40 (300)
T ss_pred HHHHHHHHHHH
T ss_conf 78999999999
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.54 E-value=14 Score=15.45 Aligned_cols=173 Identities=15% Similarity=0.137 Sum_probs=94.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCC-CCCCHHCCCCCHH
Q ss_conf 488608980376522799999998----62998999929989999999999985799809985722-4670100489989
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAW-DCLPYDRVSPSPY 87 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~-E~LPYd~~sp~~d 87 (1187)
+...-|.+-||.||+++-.++.|+ +.++.+++|+.|-.+...+ +.|+-+.....|-+||.- +.-| .+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~-eQL~~La~q~~v~~f~~~~~~~P-------v~ 169 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI-EQLKQLAEQVGVPFFGSGTEKDP-------VE 169 (451)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHHCCCCEECCCCCCCH-------HH
T ss_conf 99858999815679748689999999997499458985056786899-99999998609853167788997-------99
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECHHH-------------HHCCCCCHHHHHCCEEEEECCCCCCHHHHHHH-HHHC
Q ss_conf 999999999998412446887699956678-------------52369986688515489940974199999999-9982
Q gi|254780947|r 88 VVTRRLSCISNLVSFNSSKETIIVLTTVSA-------------VMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEK-LETN 153 (1187)
Q Consensus 88 i~~eRl~~L~~L~~~~~~~~~~IIVtt~~A-------------Llqklpp~~~l~~~~l~L~vGd~id~~~L~~~-Lv~~ 153 (1187)
|..+-++.... ..-..|||-|+-= +-.-+-|-+.+ ..+.-..||..- ...+. =...
T Consensus 170 Iak~al~~ak~------~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~l--lVvDam~GQdA~--~~A~aF~e~l 239 (451)
T COG0541 170 IAKAALEKAKE------EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETL--LVVDAMIGQDAV--NTAKAFNEAL 239 (451)
T ss_pred HHHHHHHHHHH------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE--EEEECCCCHHHH--HHHHHHHHHC
T ss_conf 99999999997------4998899968873303099999999998553987489--987644456789--9999986626
Q ss_pred CCEECCCCCCCCEEEEECC-EEEEECCCCCCCEEEECCCCEEEEEEEEECCCCC
Q ss_conf 8845545217831654574-7573069888726886348722101545137485
Q gi|254780947|r 154 GFQRVNAVYKVGEYAVRGG-ILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQR 206 (1187)
Q Consensus 154 GY~Rv~~Ve~~GEFAvRGg-IIDIFp~~~~~PiRIEFFGDeIESIR~FDp~TQR 206 (1187)
|.+-+=.----| .-||| -+-+=..+ ..||.--=-|..|+.+..|+|..=-
T Consensus 240 ~itGvIlTKlDG--daRGGaALS~~~~t-g~PIkFiGtGEki~dLE~F~P~R~a 290 (451)
T COG0541 240 GITGVILTKLDG--DARGGAALSARAIT-GKPIKFIGTGEKIDDLEPFHPDRFA 290 (451)
T ss_pred CCCEEEEECCCC--CCCCHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 986499971467--87622888569987-8985997458873547774958899
No 402
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family; InterPro: IPR006423 This group of sequences represents a set of bacterial lipoproteins belonging to a larger acid phosphatase family, which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles..
Probab=51.53 E-value=8.6 Score=17.14 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHCCCCC
Q ss_conf 99999998679829999589--458999998677648873
Q gi|254780947|r 398 LSHVAQQAQKGIKTIISASS--QGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 398 ~~~I~~~~k~g~rViI~a~s--~~~~eRL~elL~e~gI~~ 435 (1187)
++++.---++|-.|+-++.- +..++--.+-|...||+.
T Consensus 149 ~~Fl~ya~~kGv~iFYvsnR~~~~~~~aTl~nLk~~g~P~ 188 (295)
T TIGR01533 149 LEFLNYANSKGVKIFYVSNRSDEKEKEATLENLKKKGFPQ 188 (295)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 8899999875925899656873012442079998638795
No 403
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=51.51 E-value=14 Score=15.45 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=7.6
Q ss_pred HHHHCCEEEEECCCCCCH
Q ss_conf 688515489940974199
Q gi|254780947|r 126 MSIKDYKLSIQSKDQIDM 143 (1187)
Q Consensus 126 ~~l~~~~l~L~vGd~id~ 143 (1187)
+.+..+-+-+---|.++-
T Consensus 112 ~l~~~~DiViDctDN~~t 129 (209)
T PRK08644 112 ELFKDCDIVVEAFDNAET 129 (209)
T ss_pred HHHHCCCEEEECCCCHHH
T ss_conf 998579999999999999
No 404
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=51.50 E-value=6.4 Score=18.11 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=20.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 886089803765227999999986-29989999299
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIAR-LGLSLVYICSD 48 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d 48 (1187)
.+.-+.|.|--||+|+=+.-++++ .|-..-+..|+
T Consensus 27 ~~~v~~L~GDlGaGKTtl~~G~~~~LG~~~~~~SPT 62 (147)
T TIGR00150 27 LGTVVLLKGDLGAGKTTLVKGLLQGLGITGNVTSPT 62 (147)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 753899732346665899999998379226885793
No 405
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=51.48 E-value=14 Score=15.44 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH-HCCCCEEEEECC----------HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 73577887651488608980376522799999998-629989999299----------8999999999998579980998
Q gi|254780947|r 2 IFGSDIERISEKYCKKITLSPVIDGTEGFILAEIA-RLGLSLVYICSD----------ERILINLKKILTLVVPDIRVII 70 (1187)
Q Consensus 2 ~f~~~~~~~~~k~~~~i~l~Gl~gs~~allla~l~-~~~rpilvI~~d----------~~~A~~l~~dL~~f~~~~~V~~ 70 (1187)
+.|.--.++..|..+=+.|.|-||++|+|++-+.| ..+-|..-|.-+ ..+-++|.+.-+-- .++..
T Consensus 79 K~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVGVGASRVRDLFeqAK~n---APCII 155 (505)
T TIGR01241 79 KNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKN---APCII 155 (505)
T ss_pred CCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCCCCCEEHHHHHHHHHHH---CCCEE
T ss_conf 696379872788987147317878424678875202588962474076101112056400014457999971---89705
Q ss_pred CCCCCCCCHHCCCCCH--H-HH---HHHHHHHHHHHH---CCCCCCCEEEEECH-------HHHHCCC--------CC--
Q ss_conf 5722467010048998--9-99---999999999841---24468876999566-------7852369--------98--
Q gi|254780947|r 71 FPAWDCLPYDRVSPSP--Y-VV---TRRLSCISNLVS---FNSSKETIIVLTTV-------SAVMCRS--------VN-- 124 (1187)
Q Consensus 71 FP~~E~LPYd~~sp~~--d-i~---~eRl~~L~~L~~---~~~~~~~~IIVtt~-------~ALlqkl--------pp-- 124 (1187)
|=+ |+ |.+=.+. - +. -||=+||++|+. +=.+....||++-- .|||++= .-
T Consensus 156 FID-EI---DAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~~PD 231 (505)
T TIGR01241 156 FID-EI---DAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 231 (505)
T ss_pred EEE-CH---HHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 640-10---00033356436676541355433233133178589885799850488411651006878744513458887
Q ss_pred ----HHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECC---CCCCCCEEEEEC
Q ss_conf ----66885154899409741999999999982884554---521783165457
Q gi|254780947|r 125 ----IMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVN---AVYKVGEYAVRG 171 (1187)
Q Consensus 125 ----~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~---~Ve~~GEFAvRG 171 (1187)
.+.|+=|...++.-+++|++.+++. .=||+=.| .|-|--=+|.|-
T Consensus 232 ~~GR~~IL~VH~~~~kLa~~vdL~~~Ar~--TPGfSGADLaNl~NEAALlAAR~ 283 (505)
T TIGR01241 232 IKGREEILKVHAKNKKLAPDVDLKAVARR--TPGFSGADLANLLNEAALLAARK 283 (505)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 46789999998548899702477999701--56876788999999999998617
No 406
>pfam00493 MCM MCM2/3/5 family.
Probab=51.37 E-value=11 Score=16.32 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=6.7
Q ss_pred CCEEEEECCEE
Q ss_conf 83165457475
Q gi|254780947|r 164 VGEYAVRGGIL 174 (1187)
Q Consensus 164 ~GEFAvRGgII 174 (1187)
-|+|.+++|-+
T Consensus 107 ~~~~~leaGal 117 (327)
T pfam00493 107 TGEWTLEAGAL 117 (327)
T ss_pred CCCEEEECCCE
T ss_conf 88369836847
No 407
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=51.35 E-value=11 Score=16.34 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCEECC
Q ss_conf 7676733467613346
Q gi|254780947|r 273 METIFPYLSEFCIITD 288 (1187)
Q Consensus 273 ~~tLfDYLp~~~iii~ 288 (1187)
++-+|||.+.+-+-+.
T Consensus 39 l~G~f~~~~~~riq~~ 54 (308)
T COG1493 39 LAGFFDYYPPERIQLL 54 (308)
T ss_pred EEEEEECCCCCEEEEE
T ss_conf 4455500376717896
No 408
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.33 E-value=14 Score=15.43 Aligned_cols=130 Identities=7% Similarity=0.031 Sum_probs=58.8
Q ss_pred HHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHH-CCCCEEEEECC---HHHHHHHHHHHHHH-CCCCEEEECCCCCCCCH
Q ss_conf 78876514-886089803765227999999986-29989999299---89999999999985-79980998572246701
Q gi|254780947|r 6 DIERISEK-YCKKITLSPVIDGTEGFILAEIAR-LGLSLVYICSD---ERILINLKKILTLV-VPDIRVIIFPAWDCLPY 79 (1187)
Q Consensus 6 ~~~~~~~k-~~~~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d---~~~A~~l~~dL~~f-~~~~~V~~FP~~E~LPY 79 (1187)
.+.++.+. .-.++.+.|-+|++|+-++..+++ .+.+.+-+-.. -.+..++.+.-+.. .+...|++.-+ +
T Consensus 27 ~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~~gv~dir~ii~~a~~~~~~~~tilfiDE--I--- 101 (417)
T PRK13342 27 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVTSGVKDLREVIEEAKQSRLGRRTILFIDE--I--- 101 (417)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC--H---
T ss_conf 99999976999759988969998999999999986898899614103889999999998863148965999978--2---
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 0048998999999999999841244688769995667852369986688515489940974199999999998
Q gi|254780947|r 80 DRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLET 152 (1187)
Q Consensus 80 d~~sp~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~ 152 (1187)
.+++ .++.-..|..+ . ++.-..|-+|.++=...+.|+=.=.-..+.| ..++.+++...|..
T Consensus 102 HRfn-----K~QQD~LLp~v-E---~g~iiLIgATTENP~f~in~aLlSRc~vf~l---~~L~~~di~~iL~r 162 (417)
T PRK13342 102 HRFN-----KAQQDALLPHV-E---DGTITLIGATTENPSFEVNPALLSRAQVFEL---KPLSEEDLEQLLKR 162 (417)
T ss_pred HHCC-----HHHHHHHHHHH-H---CCCEEEEEECCCCCHHHCCHHHHHHHHHEEC---CCCCHHHHHHHHHH
T ss_conf 0058-----89999998751-1---2656999741579225348989856570020---58999999999999
No 409
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=51.24 E-value=8.9 Score=17.01 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCEECCC
Q ss_conf 76767334676133465
Q gi|254780947|r 273 METIFPYLSEFCIITDP 289 (1187)
Q Consensus 273 ~~tLfDYLp~~~iii~~ 289 (1187)
++-+|+|++.+-+.+..
T Consensus 40 L~G~~~~~~~~RIQi~G 56 (308)
T PRK05428 40 LAGYFNYFHPERVQLLG 56 (308)
T ss_pred HCCCCCCCCCCEEEEEC
T ss_conf 56456555887599986
No 410
>KOG1803 consensus
Probab=51.11 E-value=14 Score=15.40 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=62.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 89984888887448999999987605988541443166543248999999987511275499982436655589999998
Q gi|254780947|r 617 QFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE 696 (1187)
Q Consensus 617 eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~ 696 (1187)
.=..-||...-+-|.+|+.- -|..-.|| +|-|-=|-|||-.-.--.--+|.-||||.|++||-+=. .|..+
T Consensus 177 ~~~~~~~~~ln~SQk~Av~~---~~~~k~l~--~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AV----dNive 247 (649)
T KOG1803 177 KKITFFNKNLNSSQKAAVSF---AINNKDLL--IIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAV----DNIVE 247 (649)
T ss_pred CCCCCCCCCCCHHHHHHHHH---HHCCCCCE--EEECCCCCCCEEEHHHHHHHHHHCCCEEEEECCCHHHH----HHHHH
T ss_conf 00136774323779999999---73568835--75579988840439999999997288599976736789----99998
Q ss_pred HHCCC--C-CCEEEECCCCCCHHHH
Q ss_conf 60678--9-8335410666302567
Q gi|254780947|r 697 RFQGF--S-VRIASISRFVQTKEAA 718 (1187)
Q Consensus 697 Rf~~~--p-v~i~~lsRf~~~~e~~ 718 (1187)
|...- + +++++-.|.-.....+
T Consensus 248 rl~~~~~~l~R~g~paRl~~~~~~~ 272 (649)
T KOG1803 248 RLTHLKLNLVRVGHPARLLESVADH 272 (649)
T ss_pred HHCCCCCCHHHCCCHHHHHHHHHHH
T ss_conf 7500355201137556665553046
No 411
>CHL00095 clpC Clp protease ATP binding subunit
Probab=50.83 E-value=15 Score=15.37 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHH
Q ss_conf 66555899999986067898335410666302567777531225760898520654278520236569972223300888
Q gi|254780947|r 684 TLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKH 763 (1187)
Q Consensus 684 TiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~ 763 (1187)
.+...++-..-..|..+.||.- -.++.++-+..| -..|++.| +-|
T Consensus 470 ~~v~~~dI~~vvs~~tgiPv~~-------~~~~e~~~l~~l-----------e~~L~~~V-----------------iGQ 514 (823)
T CHL00095 470 PVVTEKDIAEIVSAWTGIPVNK-------LTKSESEKLIHM-----------EETLHKRI-----------------IGQ 514 (823)
T ss_pred CCCCHHHHHHHHHHHHCCCHHH-------HCCCHHHHHHHH-----------HHHHHHHH-----------------CCC
T ss_conf 7207999999999986898476-------334588999878-----------88787784-----------------076
Q ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHH----HHHHHHHHHHHCCEEEE
Q ss_conf 99886316788489995353408899997122254122015788775379998579789----89999989871885999
Q gi|254780947|r 764 KEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLV----VRETLMREYYRGGQSFY 839 (1187)
Q Consensus 764 Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~----i~~ai~rEl~RgGQvf~ 839 (1187)
-|.+++ |-+.+..|-+|++|- +.||-+|.--=-..+ +..++-..|--+..-+.
T Consensus 515 d~AI~~--------------vs~ai~rsraGl~~~---------~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~li 571 (823)
T CHL00095 515 DEAVVA--------------VSKAIRRARVGLKNP---------NRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMI 571 (823)
T ss_pred HHHHHH--------------HHHHHHHHHCCCCCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 999999--------------999999997089989---------997468998789988779999999999747820258
Q ss_pred EECCCCCHHHHHHHHHHHC--CCCCEEEEE-CCCCHH------------HHHHHHHHHHCCCCCEEEECCCE-ECCCCCC
Q ss_conf 8264469288999998616--546488861-346747------------89999999963887579761020-0363322
Q gi|254780947|r 840 VCPRLSDLEKCYTFLQSEV--PELKIAMAH-GQMSPK------------NLEDKMNAFYEGQYDVLLSTSIV-ESGLDLP 903 (1187)
Q Consensus 840 v~nrv~~i~~~~~~l~~l~--p~~~i~vaH-Gqm~~~------------~le~~m~~F~~~~~dvLv~TtIi-EsGlDip 903 (1187)
-.+=-|=.+ ..-+.+|+ |-.-||+.. ||+.+. |+||.--+.++==++||=--++- -.|=.|-
T Consensus 572 R~DMSEy~E--~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vd 649 (823)
T CHL00095 572 RLDMSEYME--KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTID 649 (823)
T ss_pred EECCCCCCC--CCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 853510155--420767458998766778788201988719986998621311388999988765168843489999884
Q ss_pred CCCEEEEECH
Q ss_conf 3326676250
Q gi|254780947|r 904 KANTMIVQRA 913 (1187)
Q Consensus 904 ~aNTiii~~a 913 (1187)
--|||||.-+
T Consensus 650 F~NtIIImTS 659 (823)
T CHL00095 650 FKNTLIIMTS 659 (823)
T ss_pred CEEEEEEECC
T ss_conf 3103999716
No 412
>pfam11605 Vps36_ESCRT-II Vacuolar protein sorting protein 36 Vps36. Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes.
Probab=50.58 E-value=8.2 Score=17.29 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=28.1
Q ss_pred HCCCCCEEECCCCCEEEECCCCCC-CCCCCCCEE---EEEECCCC
Q ss_conf 032351120355423311231014-566666359---99986998
Q gi|254780947|r 503 IEEGAIIVHAEHGIGRFVRLYSIE-VSGTFHDCL---ELHYADNA 543 (1187)
Q Consensus 503 L~~GDyVVH~dHGIGrY~GLe~l~-v~G~~~DyL---~IeYa~~D 543 (1187)
|.+|...|+.++|||.|.|=.++. -++ -+=|| .|-|.+.+
T Consensus 10 L~~~E~~v~~q~~V~lY~G~~K~~~~q~-G~l~LTshRli~~d~~ 53 (92)
T pfam11605 10 LRENEVDIYVQDSVGLYDGKEKILNRQN-GRLYLTTHRLIYVDSA 53 (92)
T ss_pred ECCCCEEEEEECCEEEECCCCCCCCCCC-CEEEEEEEEEEEECCC
T ss_conf 0699459999578578658643523306-6899995079996698
No 413
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.53 E-value=15 Score=15.34 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=17.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 885414431665432489999999875112754
Q gi|254780947|r 644 GRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQ 676 (1187)
Q Consensus 644 ~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQ 676 (1187)
.-+|-=.|-|-+|-|||+++.+-|=+.-..|+-
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 754599986799845899999999999855966
No 414
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=50.49 E-value=15 Score=15.33 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=46.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHH-----------------HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH--------
Q ss_conf 59885414431665432489999-----------------99987511275499982436655589999998--------
Q gi|254780947|r 642 SSGRLMDRLICGDVGFGKTEIAL-----------------RAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSE-------- 696 (1187)
Q Consensus 642 es~~PMDRLiCGDVGfGKTEVA~-----------------RAafkav~~gkQvavlvPTTiLa~QH~~tf~~-------- 696 (1187)
+.++|+==||-|--|-||.-+|. |..+..+.+-.|. | -=|..||..
T Consensus 258 ~~~~PiiILIGGaSGvGKSTlAseLA~RLGI~~VIsTDsIREVMR~~is~el~----P-----~Lh~SSy~Awk~L~~~~ 328 (492)
T PRK12337 258 KPPRPLHVLLGGVSGTGKSVLAAELAYRLGITRVVPTDAIREVMRAMVSKDLL----P-----TLHASTFNAWEALVPPG 328 (492)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHC----C-----HHHHHHHHHHHHCCCCC
T ss_conf 56887699960788866888999999960988102544799999984597648----4-----57775568888608734
Q ss_pred -HHCCCCCCEEEECCCCCCHHHH-----H-HHHHHCCCCCEEEEECHHHH
Q ss_conf -6067898335410666302567-----7-77531225760898520654
Q gi|254780947|r 697 -RFQGFSVRIASISRFVQTKEAA-----L-HKKSITEGQVDIVIGTHALL 739 (1187)
Q Consensus 697 -Rf~~~pv~i~~lsRf~~~~e~~-----~-i~~~l~~G~idiviGTH~ll 739 (1187)
....-|.+-.++.-|....++- . +-..++.|.-=||=|.|=+.
T Consensus 329 ~~~~~~~~~~~vi~GF~~Qv~~V~vGl~aVieRa~~EG~SvVIEGVHLvP 378 (492)
T PRK12337 329 LGLPGEPTRVELLAGFRDQVQQVSVGLKAVVRRSILEGTSLVLEGVHLVP 378 (492)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECH
T ss_conf 57777860768998999999999999999999999728867998333070
No 415
>PRK07369 dihydroorotase; Provisional
Probab=50.44 E-value=15 Score=15.33 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHC---CCCCCCC
Q ss_conf 60678983354106663025677775312257608985206542---7852023
Q gi|254780947|r 697 RFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN---PKITFAN 747 (1187)
Q Consensus 697 Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~---~~v~f~~ 747 (1187)
-++.+.-...+---+|++.+++...++|++|.||+|---|+=.+ |...|.+
T Consensus 270 ~~~~~~~~~k~~PPLR~~~d~~aLw~al~~G~Id~i~SDHaP~~~~eK~~~f~~ 323 (419)
T PRK07369 270 ALASYDPNLRLDPPLGNPSDRQALIEGIRTGIIDAIAIDHTPYTYEEKTVAFAE 323 (419)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCHHH
T ss_conf 872757757985899898899999878736976799828889998884488534
No 416
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=50.31 E-value=15 Score=15.31 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 69999668888898899999999972556
Q gi|254780947|r 936 FALFLLPENRPLTAAAQKRLRILQSLNTL 964 (1187)
Q Consensus 936 yayl~~~~~~~l~~~a~kRL~ai~~~~~l 964 (1187)
-.|+++++++.|+..|+.=++.++||+..
T Consensus 272 ~~~lv~~k~~~ls~a~~~fie~~ke~~s~ 300 (312)
T PRK10341 272 RYAAVWSKNYRIKKAASVLVELAKEYSSY 300 (312)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 89999989398899999999999987065
No 417
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=50.29 E-value=11 Score=16.35 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=33.1
Q ss_pred CCCCCCCEEEEEECCCCEEEEEH---------HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56666635999986998799666---------75211110036788853234340348999999999999999999
Q gi|254780947|r 527 VSGTFHDCLELHYADNAKLFVPV---------ENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKL 593 (1187)
Q Consensus 527 v~G~~~DyL~IeYa~~DkLYVPv---------~~l~lIskYg~~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eL 593 (1187)
.-|..-|++.|-++-+-+-+-.. +.++++..+++-..+++.==+.=+.+.-..+.+++.++++.+++
T Consensus 211 L~Gs~Pd~lIL~H~p~R~~~~~~~~~~iP~l~~~i~l~e~~a~~~~~~kvvgIslNt~~l~~~ea~~~~~~~~~~~ 286 (302)
T pfam07755 211 LHGSQPDALVLCHRPGRKHRRGFPHYPLPPLEEEIELIEALAGTTPPAKVVGISLNTRGLSEAEAREAIERIEEEL 286 (302)
T ss_pred HCCCCCCEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 6078998699963789862278766889998999999999736479973999995578799999999999999998
No 418
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=50.27 E-value=11 Score=16.26 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHCCCEEC
Q ss_conf 4199999999998288455
Q gi|254780947|r 140 QIDMAKVIEKLETNGFQRV 158 (1187)
Q Consensus 140 ~id~~~L~~~Lv~~GY~Rv 158 (1187)
...-..|+.++....|...
T Consensus 10 ~VGKTsli~r~~~~~F~~~ 28 (173)
T cd04130 10 AVGKTSLIVSYTTNGYPTE 28 (173)
T ss_pred CCCHHHHHHHHHHCCCCCC
T ss_conf 9788999999961999998
No 419
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=50.23 E-value=15 Score=15.30 Aligned_cols=89 Identities=6% Similarity=0.047 Sum_probs=51.0
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH-------HHH--CCC-CEEEE-ECCHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 35778876514886089803765227999999-------986--299-89999-29989999999999985799809985
Q gi|254780947|r 3 FGSDIERISEKYCKKITLSPVIDGTEGFILAE-------IAR--LGL-SLVYI-CSDERILINLKKILTLVVPDIRVIIF 71 (1187)
Q Consensus 3 f~~~~~~~~~k~~~~i~l~Gl~gs~~allla~-------l~~--~~r-pilvI-~~d~~~A~~l~~dL~~f~~~~~V~~F 71 (1187)
+..+++.+.+.+..-+.+.|-+|-+-++-..+ ..+ .++ |++.- ..+-+++.++.+..+-..- ..++..
T Consensus 24 l~~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gvg~~t~~ai~la~~A~~~Ga-dai~v~ 102 (296)
T PRK03620 24 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAGAGGGTAQAIEYAQAAERAGA-DGILLL 102 (296)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC-CEEEEC
T ss_conf 9999999997799989968423134348999999999999998389735982577537999999999998299-989966
Q ss_pred CCCCCCCHHCCCCCHHHHHHHHHHHHH
Q ss_conf 722467010048998999999999999
Q gi|254780947|r 72 PAWDCLPYDRVSPSPYVVTRRLSCISN 98 (1187)
Q Consensus 72 P~~E~LPYd~~sp~~di~~eRl~~L~~ 98 (1187)
|++ -..++.+-+-+-.+.+..
T Consensus 103 pPy------y~~~~~~~l~~~~~~ia~ 123 (296)
T PRK03620 103 PPY------LTEAPQEGLAAHVEAVCK 123 (296)
T ss_pred CCC------CCCCCHHHHHHHHHHHHH
T ss_conf 986------789999999999999998
No 420
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=50.22 E-value=15 Score=15.30 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=15.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-CEEEEECCHHH
Q ss_conf 6089803765227999999986299-89999299899
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGL-SLVYICSDERI 51 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~r-pilvI~~d~~~ 51 (1187)
.++.+-|+.|- -+.++-.|++.+- .+.+|=+|.-+
T Consensus 22 s~VlivG~GGl-Gs~~~~~La~~Gvg~i~lvD~D~ve 57 (228)
T cd00757 22 ARVLVVGAGGL-GSPAAEYLAAAGVGKLGLVDDDVVE 57 (228)
T ss_pred CCEEEECCCHH-HHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 97899887788-9999999998399758999787455
No 421
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=50.12 E-value=15 Score=15.29 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999986776
Q gi|254780947|r 421 LQHLIHLIES 430 (1187)
Q Consensus 421 ~eRL~elL~e 430 (1187)
.+++.+++..
T Consensus 289 l~~~v~~~s~ 298 (361)
T cd01318 289 LSRVVRLTSH 298 (361)
T ss_pred HHHHHHHHHH
T ss_conf 9999999968
No 422
>PRK06949 short chain dehydrogenase; Provisional
Probab=49.87 E-value=15 Score=15.26 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=40.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 48860898037652279999999862998999929989999999999985799809985
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF 71 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~F 71 (1187)
=.++.+.++|...+--.-++..|++.+..+++...+.+.++++.++++....+ +.++
T Consensus 7 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~--~~~~ 63 (258)
T PRK06949 7 LEGKVALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGA--AHVV 63 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEE
T ss_conf 89998999585779999999999987999999969889999999999965992--8999
No 423
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=49.81 E-value=15 Score=15.26 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHCCCCCEEEEECHHHHCCCCC
Q ss_conf 0256777753122576089852065427852
Q gi|254780947|r 714 TKEAALHKKSITEGQVDIVIGTHALLNPKIT 744 (1187)
Q Consensus 714 ~~e~~~i~~~l~~G~idiviGTH~ll~~~v~ 744 (1187)
...|++.-+.+-+--+|+|||+|.=.-..++
T Consensus 189 ~~~q~~~a~~lidaGaDlIiGhHpHv~q~iE 219 (237)
T pfam09587 189 TPEQRELAHALIDAGADLVIGHHPHVLQPIE 219 (237)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCCCEE
T ss_conf 9999999999997799999918998788749
No 424
>PRK06125 short chain dehydrogenase; Provisional
Probab=49.75 E-value=15 Score=15.25 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 88608980376522799999998629989999299899999999999857998099857
Q gi|254780947|r 14 YCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 14 ~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
.++.+.++|...+--.-++-.|++.+..++++..|+..+++..++|....+ ..+..++
T Consensus 6 ~gK~alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~-~~~~~~~ 63 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHG-VDVAVHA 63 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 999899968776899999999998799899997988999999999987009-8669998
No 425
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=49.70 E-value=15 Score=15.25 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 9999999998679829999589458999998677648
Q gi|254780947|r 396 KFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHG 432 (1187)
Q Consensus 396 ~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~g 432 (1187)
..++.+...+..|+-+++.+.+.+...+...-|-+..
T Consensus 94 ~~i~~l~~HRH~G~DiiliTQ~~~~id~~ir~lve~~ 130 (183)
T pfam05707 94 PVLDAFSTHRHLGWDIILITQNPSKIDKQIRALVEHH 130 (183)
T ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCEE
T ss_conf 8999999807788208999189799729999861489
No 426
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=49.64 E-value=15 Score=15.24 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=21.9
Q ss_pred EEECCCCCCHHHHHHHHHHHC-CC-CEEEEECCH
Q ss_conf 898037652279999999862-99-899992998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIARL-GL-SLVYICSDE 49 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~~-~r-pilvI~~d~ 49 (1187)
|-++|-+||+++-+...+.+. ++ .+.+|+-|.
T Consensus 2 IgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~ 35 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDD 35 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8997888786999999999985848769996577
No 427
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=49.45 E-value=14 Score=15.42 Aligned_cols=18 Identities=6% Similarity=0.122 Sum_probs=11.5
Q ss_pred CCCCHHHHCCCCCEEECC
Q ss_conf 012244403235112035
Q gi|254780947|r 496 SFFDSSNIEEGAIIVHAE 513 (1187)
Q Consensus 496 ~i~dl~eL~~GDyVVH~d 513 (1187)
.-+|++||++=|+||--.
T Consensus 140 YgIDidDlsiYDLvinT~ 157 (173)
T TIGR02173 140 YGIDIDDLSIYDLVINTS 157 (173)
T ss_pred CCCCCCCCEEEEEEEECC
T ss_conf 250234322220033447
No 428
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=49.41 E-value=15 Score=15.21 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=37.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 608980376522799999998629989999299899999999999857998099857
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
+-..++|..++--.-++-.|++.+..++++..+...++...+++..-.+..++..++
T Consensus 3 KvalITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 59 (259)
T PRK12384 3 KVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFG 59 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 789994688689999999999879999999798899999999998624886089998
No 429
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=49.40 E-value=15 Score=15.21 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=4.0
Q ss_pred HHHCCCCCEEEE
Q ss_conf 531225760898
Q gi|254780947|r 722 KSITEGQVDIVI 733 (1187)
Q Consensus 722 ~~l~~G~idivi 733 (1187)
+.|.+|++|+.|
T Consensus 110 ~~l~~g~~D~ai 121 (269)
T PRK11716 110 EKVQSGEADLAI 121 (269)
T ss_pred HHHHCCCCCEEE
T ss_conf 999869955899
No 430
>COG3875 Uncharacterized conserved protein [Function unknown]
Probab=49.29 E-value=15 Score=15.20 Aligned_cols=67 Identities=24% Similarity=0.150 Sum_probs=34.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCEEEECCCCCCHHHH------HHHHHHHHHCCCCEEEEEECH
Q ss_conf 98998488888744899999998760-598854144316654324899------999998751127549998243
Q gi|254780947|r 616 SQFIKRFPHVETEDQEKAIDAVIQDL-SSGRLMDRLICGDVGFGKTEI------ALRAAFIAVMNGLQVAVIAPT 683 (1187)
Q Consensus 616 ~eFe~~FpyeET~DQ~~AI~eV~~Dm-es~~PMDRLiCGDVGfGKTEV------A~RAafkav~~gkQvavlvPT 683 (1187)
+|--..|.=.=+.-|.++.+.|.+=- -.--|-||-+.---||-|-+| ||-+|-.||++|- +.+|||-
T Consensus 247 keii~~~aGdf~~Ahrkg~e~v~~ly~v~v~p~d~~~v~~gG~p~D~niyqa~k~~~~a~~avk~~G-~Ii~va~ 320 (423)
T COG3875 247 KEIIAAFAGDFLEAHRKGCELVDQLYKVKVEPADAAVVSCGGFPKDINIYQAKKALKNARPAVKAGG-SIILVAE 320 (423)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCCCC-EEEEEHH
T ss_conf 4320011331899998776899875520257620321003785431469877546654110114786-5997355
No 431
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=49.17 E-value=15 Score=15.19 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=79.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCC
Q ss_conf 77887651488608980376522799999998629989999299899999999999857998099857224670100489
Q gi|254780947|r 5 SDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSP 84 (1187)
Q Consensus 5 ~~~~~~~~k~~~~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp 84 (1187)
++++.|.+.+-+.+. |++|+.-.-++-++.+.+.--++.+.+|..|.-+++-..-..+.--|+.- .+
T Consensus 2 Alv~~L~~~GV~~vF--g~pG~~~~~l~~a~~~~~~i~~i~~~hE~~A~~mA~gyar~tgkp~v~~~-----------t~ 68 (162)
T cd07037 2 ALVEELKRLGVRDVV--ISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVC-----------TS 68 (162)
T ss_pred HHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEE-----------CC
T ss_conf 689999987999999--90770289999999858997699536677899999999998799879994-----------78
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 989999999999998412446887699956678523699866885154899409741999999999982884
Q gi|254780947|r 85 SPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQ 156 (1187)
Q Consensus 85 ~~di~~eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~ 156 (1187)
.+... .++..|.....+.-|.|++|.- .|.+... .-..|++|...+.+..+.+-++
T Consensus 69 GPG~~----N~~~gl~~A~~d~~Pvl~itg~-------~~~~~~g-----~g~~Q~~dq~~l~~~itK~s~~ 124 (162)
T cd07037 69 GTAVA----NLLPAVVEAYYSGVPLLVLTAD-------RPPELRG-----TGANQTIDQVGLFGDYVRWSVD 124 (162)
T ss_pred CCHHH----HHHHHHHHHHHCCCCEEEEECC-------CCHHHCC-----CCCCCCCCHHHHHHHHHCEEEE
T ss_conf 83588----8889999875329988999689-------9788617-----8988643787773655207877
No 432
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=49.01 E-value=15 Score=15.17 Aligned_cols=13 Identities=8% Similarity=0.072 Sum_probs=6.9
Q ss_pred CCCEEEEEECCHH
Q ss_conf 7982999958945
Q gi|254780947|r 407 KGIKTIISASSQG 419 (1187)
Q Consensus 407 ~g~rViI~a~s~~ 419 (1187)
+|+.|++..+|-.
T Consensus 161 ~G~dVLll~DslT 173 (274)
T cd01133 161 EGQDVLLFIDNIF 173 (274)
T ss_pred CCCEEEEEEECHH
T ss_conf 8985999971868
No 433
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=48.82 E-value=8.3 Score=17.26 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 0898037652279999999
Q gi|254780947|r 17 KITLSPVIDGTEGFILAEI 35 (1187)
Q Consensus 17 ~i~l~Gl~gs~~allla~l 35 (1187)
-..++|-+||+++-++=++
T Consensus 32 LFlI~G~TGAGKSTIlDAI 50 (1047)
T PRK10246 32 LFAITGPTGAGKTTLLDAI 50 (1047)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7888899999889999999
No 434
>PRK00889 adenylylsulfate kinase; Provisional
Probab=48.81 E-value=16 Score=15.15 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=55.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHH
Q ss_conf 8608980376522799999998----629989999299899999999999857998099857224670100489989999
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEIA----RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVT 90 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l~----~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~ 90 (1187)
+--+-++|++||+++-++..|. +.+.+++++=-|+-+. .|.++. -| +.. +...-.
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~--------~l~~~l---gf--------s~~--dR~~n~ 62 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRT--------NLSKGL---GF--------SKE--DRDTNI 62 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH--------HHCCCC---CC--------CHH--HHHHHH
T ss_conf 889998898999999999999999998699679977688887--------536788---98--------989--999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHC---CEEEEECCCCCCHHHHHHHHHHCCCEEC
Q ss_conf 9999999984124468876999566785236998668851---5489940974199999999998288455
Q gi|254780947|r 91 RRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKD---YKLSIQSKDQIDMAKVIEKLETNGFQRV 158 (1187)
Q Consensus 91 eRl~~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~---~~l~L~vGd~id~~~L~~~Lv~~GY~Rv 158 (1187)
.|+.-|.+++.. ...+||+++-|..... ++..++ ..+.+- =..+++.+.++=...=|.+.
T Consensus 63 ~r~~~la~~l~~----~g~~vIvs~isp~~~~--R~~~r~~~~~~~EIy--v~~~l~~~~~RD~KgLY~ka 125 (175)
T PRK00889 63 RRIGFVAHLLTR----HGVIVLVSAISPYRET--REEVRGTIGNFVEVF--VNAPLEVCEQRDVKGLYAKA 125 (175)
T ss_pred HHHHHHHHHHHH----CCCEEEEEECCCCHHH--HHHHHHHCCCCEEEE--ECCCHHHHHHCCHHHHHHHH
T ss_conf 999999999981----8986888504799999--999998578766998--42888999880705477897
No 435
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=48.46 E-value=16 Score=15.11 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=20.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4886089803765227999999986
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEIAR 37 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l~~ 37 (1187)
.+.+-+.|-|-.|.+|++++..+..
T Consensus 59 ~~~kGlYl~G~VGrGKTmLMDlFy~ 83 (361)
T pfam03969 59 QPVRGLYLWGGVGRGKTHLMDSFFE 83 (361)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998689889988869999999998
No 436
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.45 E-value=16 Score=15.11 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=11.6
Q ss_pred HHHHHH-HHHCCCCEEEEE
Q ss_conf 999999-986299899992
Q gi|254780947|r 29 GFILAE-IARLGLSLVYIC 46 (1187)
Q Consensus 29 allla~-l~~~~rpilvI~ 46 (1187)
.+.+|. +++.++.+++|-
T Consensus 15 G~~aA~~aa~~G~kValIE 33 (466)
T PRK06115 15 GYNAAIRAGQLGLKVACVE 33 (466)
T ss_pred HHHHHHHHHHCCCCEEEEE
T ss_conf 9999999997899399996
No 437
>PRK08643 acetoin reductase; Validated
Probab=48.24 E-value=16 Score=15.08 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=15.0
Q ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 99862998999929989999999999985
Q gi|254780947|r 34 EIARLGLSLVYICSDERILINLKKILTLV 62 (1187)
Q Consensus 34 ~l~~~~rpilvI~~d~~~A~~l~~dL~~f 62 (1187)
.|++.+-.+++.-.|...+++..++++..
T Consensus 21 ~la~~Ga~V~i~d~~~~~~~~~~~~~~~~ 49 (256)
T PRK08643 21 RLVEDGFKVAIVDYNEETAKAAADKLSSD 49 (256)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 99987999999969889999999999853
No 438
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=48.12 E-value=16 Score=15.07 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=27.5
Q ss_pred EEEEEEEEECCCCCCCCCCC-EEEEECCCCEECCHHHHHHHHHHHHHH
Q ss_conf 22101545137485312221-699943773217999999999999974
Q gi|254780947|r 193 TIDSLRLFDSSTQRTIREIS-IFEINTLSEVMLTSQNISRFRENYLAN 239 (1187)
Q Consensus 193 eIESIR~FDp~TQRSi~~i~-~i~I~Pa~E~il~~e~i~~fr~~~r~~ 239 (1187)
..=.|-.-||.+-.+++++. -+.=.+++-.+...+.+....+.+.+.
T Consensus 23 ~~~~~~v~~p~d~~Al~e~rn~~~G~~~~l~~~~~~~~~~~~~~~Y~~ 70 (495)
T TIGR02533 23 DTLVVLVSDPLDLAALDEVRNRLFGAAVELIIATASEIDDAINSVYAR 70 (495)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCC
T ss_conf 879999747889657999986433852000016847899999987416
No 439
>pfam01870 Hjc Archaeal holliday junction resolvase (hjc). This family of archaebacterial proteins are holliday junction resolvases (hjc gene). The Holliday junction is an essential intermediate of homologous recombination. This protein is the archaeal equivalent of RuvC but is not sequence similar.
Probab=48.11 E-value=15 Score=15.34 Aligned_cols=43 Identities=14% Similarity=0.401 Sum_probs=29.8
Q ss_pred EEEEEECCCCEEEEEHHHHHHHHHHCC--CCCCCCCCCCCHHHHH
Q ss_conf 599998699879966675211110036--7888532343403489
Q gi|254780947|r 534 CLELHYADNAKLFVPVENIDLISRYST--EITTVTLDKLGGSAWK 576 (1187)
Q Consensus 534 yL~IeYa~~DkLYVPv~~l~lIskYg~--~~~~p~L~kLGg~~W~ 576 (1187)
.|...+..++++|++-+|++.+..++. ++..--.-|+.+..|.
T Consensus 43 ~iEvKst~~~kiyl~~eqve~L~~f~~~fg~~p~iavk~~~~~W~ 87 (93)
T pfam01870 43 VIEVKSRKKDKIYLKKEQVEKLVEFARRFGGEPFLAVKFQGKPWR 87 (93)
T ss_pred EEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEEEECCCCEE
T ss_conf 999996169818878999999999999739969999996799429
No 440
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=48.03 E-value=16 Score=15.06 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Q ss_conf 858999999999986798299995894589999
Q gi|254780947|r 392 GRFDKFLSHVAQQAQKGIKTIISASSQGALQHL 424 (1187)
Q Consensus 392 g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL 424 (1187)
+-++.+++-+....+++.+.+++...+...++.
T Consensus 309 KG~dll~~a~~~~~~~~~~~vi~G~G~~~~e~~ 341 (476)
T cd03791 309 KGIDLLLEALPELLELGGQLVILGSGDPEYEEA 341 (476)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 489999999999996398899994697789999
No 441
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=48.02 E-value=16 Score=15.06 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCEECCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCEEEEEEEEECC
Q ss_conf 9999999998288455452178316545747573069888726886348722101545137
Q gi|254780947|r 143 MAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSS 203 (1187)
Q Consensus 143 ~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~ 203 (1187)
..-|.++|.+-||.-.-.-.++|| =||+||+. +=+-|=..-+-+++.+.+.
T Consensus 90 t~~LaN~~l~rG~~v~iiDaDvGQ-------~ei~pPg~---ISL~~~~s~~~~L~~l~~~ 140 (398)
T COG1341 90 TTYLANKLLARGRKVAIIDADVGQ-------SEIGPPGF---ISLAFPESPVISLSELEPF 140 (398)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCC-------CCCCCCCE---EEEECCCCCCCCHHHCCCC
T ss_conf 999998876447418999689997-------66679746---7741256777777775865
No 442
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=47.94 E-value=16 Score=15.05 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=29.9
Q ss_pred CCEEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 860898037652279999999----86299899992998999999999998579980998
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEI----ARLGLSLVYICSDERILINLKKILTLVVPDIRVII 70 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l----~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~ 70 (1187)
.+++.+.|.+|++|+-++..+ .+.+.+++|.=+.-.-.+.+ +.+...+++
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~f------y~~~~d~il 95 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKF------YRPATDIIL 95 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH------HCCCCCEEE
T ss_conf 274799889999889999999999998699099995885499997------544776686
No 443
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=47.73 E-value=7 Score=17.81 Aligned_cols=17 Identities=0% Similarity=0.114 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 99999986798299995
Q gi|254780947|r 399 SHVAQQAQKGIKTIISA 415 (1187)
Q Consensus 399 ~~I~~~~k~g~rViI~a 415 (1187)
++|.+..++--||++..
T Consensus 233 ~Di~d~lenTpRvlL~~ 249 (335)
T TIGR01546 233 EDILDVLENTPRVLLLE 249 (335)
T ss_pred HHHHHHHCCCCEEEEEE
T ss_conf 56876532886089873
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=47.66 E-value=16 Score=15.02 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=13.0
Q ss_pred EEECCCCCCHHHHHHHH----HHHCCCCEEEEEC
Q ss_conf 89803765227999999----9862998999929
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE----IARLGLSLVYICS 47 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~----l~~~~rpilvI~~ 47 (1187)
+.++|=.|-+|+-+.|+ +++.++.+++|.-
T Consensus 5 v~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvSt 38 (322)
T COG0003 5 VFFTGKGGVGKTTIAAATAVKLAESGKKVLLVST 38 (322)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9993688545899999999999975990799984
No 445
>PRK05899 transketolase; Reviewed
Probab=47.44 E-value=16 Score=15.00 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHH-HCCEEEEEECC
Q ss_conf 222541220157887753799985797898999998987-18859998264
Q gi|254780947|r 794 GVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYY-RGGQSFYVCPR 843 (1187)
Q Consensus 794 g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~-RgGQvf~v~nr 843 (1187)
|+-|||.+.+ .|=-|.+.|.|..-++.++..-+. ..|-+|+..+|
T Consensus 473 ~i~dla~lr~-----iPn~~v~~P~d~~E~~~~~~~a~~~~~gp~~ir~~r 518 (661)
T PRK05899 473 PVEQLASLRA-----IPNLTVIRPADANETAAAWKLALERKDGPSALVLSR 518 (661)
T ss_pred HHHHHHHHHC-----CCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 4678999855-----899679815999999999999996699978999668
No 446
>PRK01211 dihydroorotase; Provisional
Probab=47.17 E-value=15 Score=15.32 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHCCCCCEEEEECH
Q ss_conf 302567777531225760898520
Q gi|254780947|r 713 QTKEAALHKKSITEGQVDIVIGTH 736 (1187)
Q Consensus 713 ~~~e~~~i~~~l~~G~idiviGTH 736 (1187)
|+.++....++|++|.||+|.--|
T Consensus 256 s~~d~~aL~~al~dG~ID~IaSDH 279 (413)
T PRK01211 256 DRSTQSRLLNSYISGNFDILSSDH 279 (413)
T ss_pred CHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 979999999987439988896378
No 447
>PHA00350 putative assembly protein
Probab=47.17 E-value=16 Score=14.97 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCEEE-EEECCCCEEEEEHHHHHHHHHH-CCCCCCCCCCCCCH
Q ss_conf 63599-9986998799666752111100-36788853234340
Q gi|254780947|r 532 HDCLE-LHYADNAKLFVPVENIDLISRY-STEITTVTLDKLGG 572 (1187)
Q Consensus 532 ~DyL~-IeYa~~DkLYVPv~~l~lIskY-g~~~~~p~L~kLGg 572 (1187)
.||+. |.|.+. +-||--. -.+|| ......+.++.+|+
T Consensus 362 ~dClv~Lt~~~~-~~~VTC~---p~~~~~~~~~~~~~~~~~~~ 400 (402)
T PHA00350 362 DDCVYRLTWESN-SRVVTCI---PRERFAQQKAQTVPDHVPGA 400 (402)
T ss_pred CCEEEEEEECCE-EEEEECC---CCCCCHHHHHHCCCCCCCCC
T ss_conf 363899877788-5589658---51020045540666567867
No 448
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=47.03 E-value=8.5 Score=17.18 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=8.3
Q ss_pred CCCCHHHHCCCCCEE
Q ss_conf 012244403235112
Q gi|254780947|r 496 SFFDSSNIEEGAIIV 510 (1187)
Q Consensus 496 ~i~dl~eL~~GDyVV 510 (1187)
.+++..+.++||-+.
T Consensus 71 gik~~~d~~vGDTit 85 (86)
T cd03699 71 GIKTVKDARVGDTIT 85 (86)
T ss_pred CCCCCCCCCCCCEEE
T ss_conf 342015573447875
No 449
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type; InterPro: IPR011835 This family consists of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; GO: 0009011 starch synthase activity, 0009250 glucan biosynthetic process.
Probab=47.00 E-value=17 Score=14.95 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH
Q ss_conf 185899999999998679--829999589458999998677
Q gi|254780947|r 391 GGRFDKFLSHVAQQAQKG--IKTIISASSQGALQHLIHLIE 429 (1187)
Q Consensus 391 ~g~l~~L~~~I~~~~k~g--~rViI~a~s~~~~eRL~elL~ 429 (1187)
++=++.+++-+......+ .++|+........|+=..-|.
T Consensus 338 QKG~Dl~~~a~~~ll~~~~~~Qlv~lG~Gdp~le~~l~~la 378 (517)
T TIGR02095 338 QKGVDLLLAALPELLELGDFGQLVVLGTGDPELEEALRELA 378 (517)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 44278999999999711796689997048879999999999
No 450
>KOG3063 consensus
Probab=46.94 E-value=7.8 Score=17.45 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=17.0
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf 323511203554233112310145666663599998699
Q gi|254780947|r 504 EEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADN 542 (1187)
Q Consensus 504 ~~GDyVVH~dHGIGrY~GLe~l~v~G~~~DyL~IeYa~~ 542 (1187)
+.-|+|||.-------....+++|+ ..|||+|||.=+
T Consensus 144 ke~d~~V~~~~~~P~~nn~IkmeVG--IedCLHIEFEYn 180 (301)
T KOG3063 144 KEKDLVVHNLSTYPEINNSIKMEVG--IEDCLHIEFEYN 180 (301)
T ss_pred HHHEEEEEECCCCCCCCCCEEEEEC--HHHCEEEEEEEC
T ss_conf 3101578962358888984667624--114168999951
No 451
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=46.87 E-value=17 Score=14.93 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=5.0
Q ss_pred CCEEEEEECCH
Q ss_conf 98299995894
Q gi|254780947|r 408 GIKTIISASSQ 418 (1187)
Q Consensus 408 g~rViI~a~s~ 418 (1187)
+.+++++|...
T Consensus 119 ~~~vliTsRp~ 129 (165)
T pfam05729 119 GASLLLTSRPD 129 (165)
T ss_pred CCEEEEEECCC
T ss_conf 86499996803
No 452
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=46.78 E-value=17 Score=14.92 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=16.4
Q ss_pred CCCCCHHHH-HHHHHHHCCCCEEEEECCHH
Q ss_conf 376522799-99999862998999929989
Q gi|254780947|r 22 PVIDGTEGF-ILAEIARLGLSLVYICSDER 50 (1187)
Q Consensus 22 Gl~gs~~al-lla~l~~~~rpilvI~~d~~ 50 (1187)
|+.-+.-|. +++.|++.++.+++|=-|.+
T Consensus 12 GVGKTT~avNLA~~La~~G~rVLlIDlDpQ 41 (246)
T TIGR03371 12 GVGRTTLTAALASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 854999999999999968997899975999
No 453
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=46.67 E-value=17 Score=14.91 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999986798299995894589999986776488733
Q gi|254780947|r 396 KFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI 436 (1187)
Q Consensus 396 ~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~ 436 (1187)
.|++.+.+...+...|++.|.|-.|...-+++|.+.|...+
T Consensus 52 ~f~~~l~~~~~~d~~ivv~C~sG~RS~~Aa~~L~~~Gf~nV 92 (117)
T cd01522 52 NFLAELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNV 92 (117)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCE
T ss_conf 27899997459998699988998159999999998598777
No 454
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=46.53 E-value=11 Score=16.45 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=15.8
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 829999589458999998677648873
Q gi|254780947|r 409 IKTIISASSQGALQHLIHLIESHGFKK 435 (1187)
Q Consensus 409 ~rViI~a~s~~~~eRL~elL~e~gI~~ 435 (1187)
|.|++=....--+.-.-.+|-++|+..
T Consensus 193 yPvl~P~~g~~IR~~~erll~a~G~~~ 219 (300)
T TIGR02424 193 YPVLLPPEGSIIRPLVERLLIACGIPA 219 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 881048622267999999998747655
No 455
>KOG0926 consensus
Probab=46.52 E-value=17 Score=14.90 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECH
Q ss_conf 986067898335410666302567777531225760898520
Q gi|254780947|r 695 SERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTH 736 (1187)
Q Consensus 695 ~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH 736 (1187)
..-|++=|..|=-|--+-|+++|..+....-.|.==.||.|.
T Consensus 597 ~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926 597 KGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN 638 (1172)
T ss_pred CCCCCCCCEEEEEHHHHCCHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 688888862886456534878763211579887368999613
No 456
>PRK07201 short chain dehydrogenase; Provisional
Probab=46.43 E-value=17 Score=14.89 Aligned_cols=46 Identities=4% Similarity=-0.003 Sum_probs=25.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 089803765227999999986-29989999299899999999999857
Q gi|254780947|r 17 KITLSPVIDGTEGFILAEIAR-LGLSLVYICSDERILINLKKILTLVV 63 (1187)
Q Consensus 17 ~i~l~Gl~gs~~allla~l~~-~~rpilvI~~d~~~A~~l~~dL~~f~ 63 (1187)
++.|+|.+|---++++..|.+ .+..+.+++.. ....++.+.+..+.
T Consensus 2 nyflTGaTGFLG~~LL~~LL~~~~a~V~cLVR~-~s~~r~~~~~~~~~ 48 (663)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRPGARVHVLVRR-QSLGRFERLAEYWG 48 (663)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHHC
T ss_conf 365406842889999999984899989999787-74999999999748
No 457
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=46.41 E-value=11 Score=16.29 Aligned_cols=133 Identities=22% Similarity=0.358 Sum_probs=84.3
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHCCCC----CCC-CCCCCCHHHHHHHHHHHHH--------
Q ss_conf 311231014566666359999869987996667521111003678----885-3234340348999999999--------
Q gi|254780947|r 518 RFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRYSTEI----TTV-TLDKLGGSAWKTRKANLKK-------- 584 (1187)
Q Consensus 518 rY~GLe~l~v~G~~~DyL~IeYa~~DkLYVPv~~l~lIskYg~~~----~~p-~L~kLGg~~W~k~K~Kakk-------- 584 (1187)
+-+||+.- .-+|=.+.|.+.. =-.-.+|=.||..|- ++. =+|=.|...==+.+.+=++
T Consensus 381 ILkGLk~~-----YE~fH~V~Y~~ea----l~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGl 451 (774)
T TIGR02639 381 ILKGLKEQ-----YEEFHHVKYSDEA----LEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGL 451 (774)
T ss_pred HHHHHHHH-----HHCCCCEECCHHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 99865542-----0132501138699----99999998886025789854322889999999971202776432011253
Q ss_pred --------HHHHHHHHHHHHHHHHHHHCCCCCCCCH-H-HHHHHHHHCCCCCCHHHHHHHHHHHHHC--------CCCCC
Q ss_conf --------9999999999999988740156778784-6-7898998488888744899999998760--------59885
Q gi|254780947|r 585 --------RLEDLAQKLVDIAAKRAIHSVPPLMVSQ-D-LYSQFIKRFPHVETEDQEKAIDAVIQDL--------SSGRL 646 (1187)
Q Consensus 585 --------~v~diA~eLl~lyA~R~~~~g~~f~~d~-~-~~~eFe~~FpyeET~DQ~~AI~eV~~Dm--------es~~P 646 (1187)
.++||.. +=|+=...+-..++.|+ . -.+.|+..-- .-==-|-.||+.|-.=. +..||
T Consensus 452 eetalPev~~~diE~----vvak~a~iP~~~~s~ddD~~~L~~L~~~L~-~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP 526 (774)
T TIGR02639 452 EETALPEVNVKDIEE----VVAKMAKIPVKTVSSDDDREKLKNLEKELK-AKIFGQDEAIEQLVSAIKRSRAGLGEPNKP 526 (774)
T ss_pred CCCCCCCCCHHHHHH----HHHHHHCCCCEEECCCHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 000478785444999----998871899415426447988720447630-131515899999999999987424778881
Q ss_pred CCE-EEECCCCCCHHHHHH
Q ss_conf 414-431665432489999
Q gi|254780947|r 647 MDR-LICGDVGFGKTEIAL 664 (1187)
Q Consensus 647 MDR-LiCGDVGfGKTEVA~ 664 (1187)
.== |=.|==|-||||||=
T Consensus 527 ~GSFLF~GPTGVGKTElak 545 (774)
T TIGR02639 527 VGSFLFVGPTGVGKTELAK 545 (774)
T ss_pred EEEEEEECCCCCCHHHHHH
T ss_conf 6888864798962578899
No 458
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=46.40 E-value=14 Score=15.51 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999998288
Q gi|254780947|r 144 AKVIEKLETNGF 155 (1187)
Q Consensus 144 ~~L~~~Lv~~GY 155 (1187)
..|+.++...-|
T Consensus 15 Tsli~r~~~~~f 26 (163)
T cd04176 15 SALTVQFVSGTF 26 (163)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999970989
No 459
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=46.37 E-value=14 Score=15.50 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=8.2
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 43166543248999999
Q gi|254780947|r 650 LICGDVGFGKTEIALRA 666 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RA 666 (1187)
++.||+|.|||-..+|=
T Consensus 4 v~iGd~gvGks~l~~rf 20 (124)
T smart00010 4 VGIGDSGVGKVGKSARF 20 (124)
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99899998899999998
No 460
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=46.36 E-value=17 Score=14.88 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99999999999999998874------015677878467898998488888744899999998760598854144316654
Q gi|254780947|r 583 KKRLEDLAQKLVDIAAKRAI------HSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVG 656 (1187)
Q Consensus 583 kk~v~diA~eLl~lyA~R~~------~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVG 656 (1187)
|++|-..++++=.....=.+ ..|.-..-+|+|+- |.. ++.+--.++.. ..=+|. |
T Consensus 279 K~~i~~~lDeld~~A~~iGAVNTiv~~~gkl~G~NTD~~G-~~~------------~L~~~~~~~~~---~~~~vl---G 339 (477)
T PRK09310 279 KTAVLDFLDKLDPSVKLCGSCNTLVFRNGKILGYNTDGEG-LFS------------LLKQKNISLNN---QHVAIV---G 339 (477)
T ss_pred HHHHHHHHCCCCHHHHHHCCEEEEEEECCEEEEEECCHHH-HHH------------HHHHHCCCCCC---CEEEEE---C
T ss_conf 9999987152898899737665899889989998257899-999------------99970999444---622442---4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 32489999999875112754999824366555899999986067
Q gi|254780947|r 657 FGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 657 fGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
=|=+==| +|+.....|.+|.|.--|. ...+.+.++|.+
T Consensus 340 aGGaarA--i~~~l~~~g~~i~I~nRt~----~ka~~La~~~~~ 377 (477)
T PRK09310 340 AGGAAKA--IATTLARQGAELLIFNRTK----AHAEALASRCQG 377 (477)
T ss_pred CCHHHHH--HHHHHHHCCCEEEEEECCH----HHHHHHHHHCCC
T ss_conf 7507999--9999986799799997998----999999987488
No 461
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=46.36 E-value=17 Score=14.88 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=20.3
Q ss_pred EEECCCCCCHHHHHHHH----HHHCCCCEEEEECCH
Q ss_conf 89803765227999999----986299899992998
Q gi|254780947|r 18 ITLSPVIDGTEGFILAE----IARLGLSLVYICSDE 49 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~----l~~~~rpilvI~~d~ 49 (1187)
+.++|=.|-+|+-+.++ +++.|+.+++|.-|.
T Consensus 2 ~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DP 37 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDP 37 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 899789966199999999999996899499995898
No 462
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=46.29 E-value=17 Score=14.87 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=16.7
Q ss_pred CHHHHHHH-HHHHCCCCEEEEECC-HHHHHHHHH
Q ss_conf 22799999-998629989999299-899999999
Q gi|254780947|r 26 GTEGFILA-EIARLGLSLVYICSD-ERILINLKK 57 (1187)
Q Consensus 26 s~~allla-~l~~~~rpilvI~~d-~~~A~~l~~ 57 (1187)
+.-+..+| .+++.|+.+++|=-| ...+..|.+
T Consensus 16 tT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e 49 (231)
T PRK13849 16 TTALMGLCAALASDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 9999999999997899599996899868899998
No 463
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=46.25 E-value=17 Score=14.87 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCCCHHHHHCCEEEEECCC-CCCHHHHHHHHHHCCCEEC--CCCCCCCEEEEECCEEEEECCCCCCCEEEECCCC
Q ss_conf 36998668851548994097-4199999999998288455--4521783165457475730698887268863487
Q gi|254780947|r 120 CRSVNIMSIKDYKLSIQSKD-QIDMAKVIEKLETNGFQRV--NAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGN 192 (1187)
Q Consensus 120 qklpp~~~l~~~~l~L~vGd-~id~~~L~~~Lv~~GY~Rv--~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGD 192 (1187)
++.|-|..++- --+-+|| ...=..|+..+....|... ++| |++-.. -+++ ...+|.+.+||-
T Consensus 4 ~~~~~p~~~~~--KiVlVGD~~VGKTsLl~~~~~~~F~~~y~pTv---~~~~~~--~i~v----~~~~v~L~lWDT 68 (232)
T cd04174 4 RRIPQPLVMRC--KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTA--GLET----EEQRVELSLWDT 68 (232)
T ss_pred CCCCCCCCEEE--EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCE---EEEEEE--EEEE----CCEEEEEEEEEC
T ss_conf 67999985588--99999989989999999997398999858836---888899--9999----999999999838
No 464
>PRK09060 dihydroorotase; Validated
Probab=46.13 E-value=17 Score=14.85 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHH---HHCCCCCCCC
Q ss_conf 8983354106663025677775312257608985206---5427852023
Q gi|254780947|r 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHA---LLNPKITFAN 747 (1187)
Q Consensus 701 ~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~---ll~~~v~f~~ 747 (1187)
|+-...+---+|+..+++...++|++|.||+|---|. .-.|...|.+
T Consensus 271 ~g~~~k~~PPLR~~~d~~aL~~~l~~G~ID~I~SDH~P~~~~~K~~~f~~ 320 (444)
T PRK09060 271 LGTLAQMNPPVRDARHRDALWRGVRQGIVDVLGSDHAPHTLEEKAKPYPA 320 (444)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCC
T ss_conf 49639974898997999999999866996099708978897885787641
No 465
>KOG0921 consensus
Probab=46.12 E-value=17 Score=14.85 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=59.1
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEEECHHHCCC-----------------CHHHHHHH
Q ss_conf 8861346747899999999638875797610200363322332667625023588-----------------60455322
Q gi|254780947|r 864 AMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL-----------------AQLYQLRG 926 (1187)
Q Consensus 864 ~vaHGqm~~~~le~~m~~F~~~~~dvLv~TtIiEsGlDip~aNTiii~~ad~~GL-----------------aqlyQlrG 926 (1187)
-=.|-|..-.+--+|..---.|..|++++|.|.|+-+-|--.--+|+..--+.=+ --+-|-+|
T Consensus 678 lp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~g 757 (1282)
T KOG0921 678 LPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKG 757 (1282)
T ss_pred CCCHHHCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHCC
T ss_conf 65022014476641367554556540134533667642045068875200111121044320344552266430676426
Q ss_pred HCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 10356767369999668888898899999999972
Q gi|254780947|r 927 RVGRSKIASFALFLLPENRPLTAAAQKRLRILQSL 961 (1187)
Q Consensus 927 RVGRs~~~ayayl~~~~~~~l~~~a~kRL~ai~~~ 961 (1187)
|-||- |.+||+.+. ++-|++|++.+
T Consensus 758 r~grv-R~G~~f~lc---------s~arF~~l~~~ 782 (1282)
T KOG0921 758 RAGRV-RPGFCFHLC---------SRARFEALEDH 782 (1282)
T ss_pred CCCEE-CCCCCCCCC---------HHHHHHHHHHC
T ss_conf 67413-566231210---------78999998761
No 466
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=46.05 E-value=17 Score=14.87 Aligned_cols=27 Identities=7% Similarity=-0.000 Sum_probs=19.7
Q ss_pred EEECCCCCCHHHHHHHHHHH-CCCCEEE
Q ss_conf 89803765227999999986-2998999
Q gi|254780947|r 18 ITLSPVIDGTEGFILAEIAR-LGLSLVY 44 (1187)
Q Consensus 18 i~l~Gl~gs~~allla~l~~-~~rpilv 44 (1187)
..+.|.++++|+-++-++++ .+.|++.
T Consensus 4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis 31 (232)
T pfam01745 4 YLIWGATCTGKTAEAIALAKETGWPVIV 31 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 8997887777169999999995997796
No 467
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=46.01 E-value=17 Score=14.84 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=17.4
Q ss_pred CCCCCCEEEEECC-CCEECCHHHHHHHHHH
Q ss_conf 3122216999437-7321799999999999
Q gi|254780947|r 207 TIREISIFEINTL-SEVMLTSQNISRFREN 235 (1187)
Q Consensus 207 Si~~i~~i~I~Pa-~E~il~~e~i~~fr~~ 235 (1187)
++.+++.+.|.-+ .+-.++...+++|.-.
T Consensus 85 ~VANvDq~liV~s~~~P~~~~~~LDRfLv~ 114 (351)
T PRK12289 85 PIANVDQILLVFALAEPPLDPWQLSRFLVK 114 (351)
T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 756703599999657899887799999999
No 468
>PRK08328 hypothetical protein; Provisional
Probab=44.96 E-value=18 Score=14.73 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=13.4
Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 998616546488861346747899999
Q gi|254780947|r 853 FLQSEVPELKIAMAHGQMSPKNLEDKM 879 (1187)
Q Consensus 853 ~l~~l~p~~~i~vaHGqm~~~~le~~m 879 (1187)
+|+++-|+++|..-++..++..+++.+
T Consensus 90 ~l~~iNp~v~i~~~~~~i~~~n~~~ll 116 (230)
T PRK08328 90 KLERFNSDIKIETFVGRLTEENIDEVL 116 (230)
T ss_pred HHHHHCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 999759950575266442377798620
No 469
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=44.91 E-value=18 Score=14.72 Aligned_cols=23 Identities=0% Similarity=-0.077 Sum_probs=11.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 48860898037652279999999
Q gi|254780947|r 13 KYCKKITLSPVIDGTEGFILAEI 35 (1187)
Q Consensus 13 k~~~~i~l~Gl~gs~~allla~l 35 (1187)
+-.-...++|-.|+++.-++..+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~~A~~~ 46 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALAL 46 (319)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 94206875899987899999999
No 470
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=44.73 E-value=12 Score=15.90 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=11.0
Q ss_pred HHHHHHHHHCCCEEEEEECCH
Q ss_conf 999999986798299995894
Q gi|254780947|r 398 LSHVAQQAQKGIKTIISASSQ 418 (1187)
Q Consensus 398 ~~~I~~~~k~g~rViI~a~s~ 418 (1187)
++.++---++|..|.+.+...
T Consensus 128 ~eFl~Yvn~~Gg~ifyiSNR~ 148 (274)
T COG2503 128 VEFLNYVNSNGGKIFYISNRD 148 (274)
T ss_pred HHHHHHHHHCCCEEEEEECCC
T ss_conf 999999985596799983654
No 471
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=44.72 E-value=18 Score=14.70 Aligned_cols=24 Identities=0% Similarity=0.011 Sum_probs=14.6
Q ss_pred CCCCE--EEECCCCCCHHHHHHHHHH
Q ss_conf 48860--8980376522799999998
Q gi|254780947|r 13 KYCKK--ITLSPVIDGTEGFILAEIA 36 (1187)
Q Consensus 13 k~~~~--i~l~Gl~gs~~allla~l~ 36 (1187)
.++++ |-+.|.+||+|+-++..+.
T Consensus 30 ~~~rR~lIgIaG~pGSGKSTlA~~l~ 55 (230)
T PRK09270 30 EPQRRTVVGIAGPPGAGKSTLAETLW 55 (230)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 99971899998999889999999999
No 472
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=44.70 E-value=15 Score=15.24 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHHHCCCE
Q ss_conf 41999999999982884
Q gi|254780947|r 140 QIDMAKVIEKLETNGFQ 156 (1187)
Q Consensus 140 ~id~~~L~~~Lv~~GY~ 156 (1187)
...=..|+.++...-|.
T Consensus 10 ~VGKTsli~r~~~~~F~ 26 (187)
T cd04132 10 GCGKTCLLIVYSQGKFP 26 (187)
T ss_pred CCCHHHHHHHHHHCCCC
T ss_conf 97699999999639899
No 473
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=44.59 E-value=18 Score=14.69 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHH
Q ss_conf 98243665558999999860678983354106663025677775312257608985206542785202365699722233
Q gi|254780947|r 679 VIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQH 758 (1187)
Q Consensus 679 vlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqr 758 (1187)
.++++.| -..|...-..|..+-||.- | .+..++-+..|. ..|++.|
T Consensus 523 ~~~~~~V-~~~~ia~vvs~~tgIPv~~--l-----~~~e~~~l~~le-----------~~L~~~V--------------- 568 (852)
T TIGR03345 523 PLVFPEV-DAQAVAEVVADWTGIPVGR--M-----VRDEIEAVLSLP-----------DRLAERV--------------- 568 (852)
T ss_pred CCCCCCC-CHHHHHHHHHHHHCCCHHH--H-----HHHHHHHHHHHH-----------HHHHHHH---------------
T ss_conf 6443556-8999999999996898788--6-----178888888679-----------9999997---------------
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCHHHH----HHHHHHHHHHC
Q ss_conf 00888998863167884899953534088999971222541220157887753799985797898----99999898718
Q gi|254780947|r 759 FGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVV----RETLMREYYRG 834 (1187)
Q Consensus 759 FGV~~Ke~lk~~~~~vdvLtlsATPIPRTL~msl~g~rd~S~i~tpP~~R~~v~T~v~~~~~~~i----~~ai~rEl~Rg 834 (1187)
+-|.|.+++ |-+.+..|-+|++|- +.||-+|.--=-..+= ..|+-.+|--+
T Consensus 569 --iGQ~~Av~~--------------v~~ai~~sraGl~d~---------~rPigsFLFlGPTGVGKTElAK~LA~~LFg~ 623 (852)
T TIGR03345 569 --IGQDHALEA--------------IAERIRTARAGLEDP---------RKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred --CCHHHHHHH--------------HHHHHHHHHCCCCCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf --284999999--------------999999987179999---------9985689987899877899999999997198
Q ss_pred CEEEEEECCCCCHHHHHH-HHHHHC--CCCCEEEEEC-CCCH
Q ss_conf 859998264469288999-998616--5464888613-4674
Q gi|254780947|r 835 GQSFYVCPRLSDLEKCYT-FLQSEV--PELKIAMAHG-QMSP 872 (1187)
Q Consensus 835 GQvf~v~nrv~~i~~~~~-~l~~l~--p~~~i~vaHG-qm~~ 872 (1187)
..... |+.-=|-+.. -+.+|+ |-.-||+-.| |+.+
T Consensus 624 e~~li---R~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe 662 (852)
T TIGR03345 624 EQNLI---TINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTE 662 (852)
T ss_pred CCCEE---EECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 61147---8422432104368786389997667487772109
No 474
>PRK07667 uridine kinase; Provisional
Probab=44.49 E-value=18 Score=14.68 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCCE--EEECCCCCCHHHHHHHHHHH----CCCCEEEEECC
Q ss_conf 7788765148860--89803765227999999986----29989999299
Q gi|254780947|r 5 SDIERISEKYCKK--ITLSPVIDGTEGFILAEIAR----LGLSLVYICSD 48 (1187)
Q Consensus 5 ~~~~~~~~k~~~~--i~l~Gl~gs~~allla~l~~----~~rpilvI~~d 48 (1187)
++++-..++.+.+ |-+.|.+||+|+.++..|++ .+.|+.++--|
T Consensus 2 ~~~~~~~~~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~D 51 (190)
T PRK07667 2 ELINVMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 51 (190)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 37789985759869999779897889999999999986659837999666
No 475
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=44.34 E-value=16 Score=15.15 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHCCCEE
Q ss_conf 9999999999828845
Q gi|254780947|r 142 DMAKVIEKLETNGFQR 157 (1187)
Q Consensus 142 d~~~L~~~Lv~~GY~R 157 (1187)
.=..|+.+++...|..
T Consensus 12 GKTsLi~rf~~~~F~~ 27 (202)
T cd04120 12 GKTSLMRRFTDDTFCE 27 (202)
T ss_pred CHHHHHHHHHCCCCCC
T ss_conf 2999999995499999
No 476
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=44.25 E-value=15 Score=15.21 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=12.8
Q ss_pred HHHHHCCCEEEEEE---CCHHHHHHHH
Q ss_conf 99986798299995---8945899999
Q gi|254780947|r 402 AQQAQKGIKTIISA---SSQGALQHLI 425 (1187)
Q Consensus 402 ~~~~k~g~rViI~a---~s~~~~eRL~ 425 (1187)
.+..=.|..|+++. -.+|-+.|+.
T Consensus 205 Tn~LiAGk~vVVaGYGw~G~G~A~r~~ 231 (422)
T TIGR00936 205 TNLLIAGKTVVVAGYGWCGKGIAMRAR 231 (422)
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 557553887899703863078999850
No 477
>pfam11325 DUF3127 Protein of unknown function (DUF3127). This bacterial family of proteins has no known function.
Probab=43.87 E-value=18 Score=14.66 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=25.7
Q ss_pred CCCCCEEEEECCEEEEECCCCCCCEEEECCCCEEEEEEEEECC
Q ss_conf 2178316545747573069888726886348722101545137
Q gi|254780947|r 161 VYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSS 203 (1187)
Q Consensus 161 Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFGDeIESIR~FDp~ 203 (1187)
+...| |..|==||+- ...++.++.++||+|.++.+-.|.+-
T Consensus 16 ~~k~G-fkKrefVlet-~~qYp~~i~fe~~~dk~~~~~~~~vG 56 (84)
T pfam11325 16 VGKNG-WKKREFVLET-EGQYPQKICFEFWGDKIDLLDSLNVG 56 (84)
T ss_pred CCCCC-CEEEEEEEEC-CCCCCCEEEEEEECCCHHHHCCCCCC
T ss_conf 84898-3988999926-98689738999983675677068999
No 478
>KOG0732 consensus
Probab=43.87 E-value=18 Score=14.61 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHHCCCC
Q ss_conf 88744899999998760598
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLSSG 644 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dmes~ 644 (1187)
+.-++|..+|-..+.||...
T Consensus 617 ~~~~v~s~~issll~d~~~~ 636 (1080)
T KOG0732 617 EGLPVQSLDISSLLSDEGTE 636 (1080)
T ss_pred HCCCHHHHHHHHHHHCCCCC
T ss_conf 51405777788987556652
No 479
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=43.78 E-value=16 Score=14.99 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHCCCEEC--CCCCCCCEEEEECCEEEEECCCCCCCEEEECCC
Q ss_conf 74199999999998288455--452178316545747573069888726886348
Q gi|254780947|r 139 DQIDMAKVIEKLETNGFQRV--NAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFG 191 (1187)
Q Consensus 139 d~id~~~L~~~Lv~~GY~Rv--~~Ve~~GEFAvRGgIIDIFp~~~~~PiRIEFFG 191 (1187)
....=..|+.++....|... +++. -.|... +.+ ...++.+++||
T Consensus 12 ~~VGKTsli~r~~~~~F~~~y~pti~--~~~~~~---~~i----~~~~v~l~iwD 57 (191)
T cd01875 12 GAVGKTCLLICYTTNAFPKEYIPTVF--DNYSAQ---TAV----DGRTVSLNLWD 57 (191)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCC--EEEEEE---EEE----CCEEEEEEEEE
T ss_conf 99899999999972999986466210--004678---999----99999999985
No 480
>PRK08506 replicative DNA helicase; Provisional
Probab=43.75 E-value=18 Score=14.59 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=24.6
Q ss_pred EEEEHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9966675211110036--7888532343403489999999999999999999999
Q gi|254780947|r 545 LFVPVENIDLISRYST--EITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIA 597 (1187)
Q Consensus 545 LYVPv~~l~lIskYg~--~~~~p~L~kLGg~~W~k~K~Kakk~v~diA~eLl~ly 597 (1187)
|=|||=-|.+++|-.- .++.|.|+-|--+. +|+.-|+=.+=||
T Consensus 342 l~vPViaLSQLnR~vE~R~dkrP~lSDLReSG----------sIEQDADvV~fly 386 (473)
T PRK08506 342 LDIPIIALSQLNRSLESRADKRPMLSDLRESG----------AIEQDADIILFVY 386 (473)
T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC----------HHHHHCCEEEEEC
T ss_conf 69979997036876555789987600113433----------1354376899965
No 481
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters .; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm.
Probab=43.71 E-value=15 Score=15.30 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 89999999999867982999958945899999867764887
Q gi|254780947|r 394 FDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFK 434 (1187)
Q Consensus 394 l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~ 434 (1187)
+++.++-+.+-..++.+|++.|.|+...-.|. +.|++
T Consensus 62 ~~K~i~~~H~a~~~~~~i~l~f~~P~dv~~Lv----~~Gv~ 98 (152)
T TIGR00854 62 LEKVIKVIHKAAYEDQKIFLLFKTPADVLTLV----EGGVP 98 (152)
T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH----HCCCC
T ss_conf 51467661898866857999973927998998----74862
No 482
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=43.56 E-value=18 Score=14.57 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=36.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 08980376522799999998629989999299899999999999857998099857
Q gi|254780947|r 17 KITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILTLVVPDIRVIIFP 72 (1187)
Q Consensus 17 ~i~l~Gl~gs~~allla~l~~~~rpilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP 72 (1187)
++.++|..++--.-++..|++.+..+++.-.++..+++..+++..+. .+.+++
T Consensus 2 nVlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~ 54 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKELG---EVYAIK 54 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC---CEEEEE
T ss_conf 89997587789999999999879999999799899999999987418---879999
No 483
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=43.47 E-value=19 Score=14.56 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=60.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHHHHH
Q ss_conf 6089803765227999999986299-899992998999999999998579980998572246701004899899999999
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGL-SLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLS 94 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~r-pilvI~~d~~~A~~l~~dL~~f~~~~~V~~FP~~E~LPYd~~sp~~di~~eRl~ 94 (1187)
.++.+-|+.| --+.++..|++.|- .+.+|=+|.-+...|... ++|-+ - |.-.|-.+...+|++
T Consensus 33 s~VlivG~GG-lG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ---------~l~~~-~-----diG~~Kv~~a~~~l~ 96 (245)
T PRK05690 33 ARVLVVGLGG-LGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQ---------VLHDD-A-----TIGQPKVESAKAALA 96 (245)
T ss_pred CCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH---------HCCCH-H-----HCCCCHHHHHHHHHH
T ss_conf 9789987777-789999999985996599996886788867888---------64598-7-----789887999999999
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEECCEE
Q ss_conf 99998412446887699956678523699866885154899409741999999999982884554521783165457475
Q gi|254780947|r 95 CISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGIL 174 (1187)
Q Consensus 95 ~L~~L~~~~~~~~~~IIVtt~~ALlqklpp~~~l~~~~l~L~vGd~id~~~L~~~Lv~~GY~Rv~~Ve~~GEFAvRGgII 174 (1187)
.+. |.+-|.++..-+..---.+.+.++-+-+---|.+....+++..-. -.+.+.|.. |=...+|-+
T Consensus 97 ~in----------p~i~i~~~~~~i~~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~--~~~~P~v~g-~~~g~~Gqv- 162 (245)
T PRK05690 97 RIN----------PHIAIETINARLDDDELAALIAAHDLVLDCTDNVATRNQLNAACF--AAKKPLVSG-AAIRMEGQV- 162 (245)
T ss_pred HHC----------CCCCEEEEHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH--HCCCCEEEE-EEEEEEEEE-
T ss_conf 758----------875226333144888998875078889987899999999999999--719987987-788658999-
Q ss_pred EEECCCCCCCEEEECCCC
Q ss_conf 730698887268863487
Q gi|254780947|r 175 DVYEPTKKYPVRLDFFGN 192 (1187)
Q Consensus 175 DIFp~~~~~PiRIEFFGD 192 (1187)
=+|-|....|.-=.+|.+
T Consensus 163 ~~~~p~~~~pC~~Cl~~~ 180 (245)
T PRK05690 163 TVFTYQDNEPCYRCLSRL 180 (245)
T ss_pred EEEEECCCCCCHHHCCCC
T ss_conf 999707999705540789
No 484
>TIGR00600 rad2 DNA excision repair protein (rad2); InterPro: IPR001044 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XPGC, an acidic protein that confers normal UV resistance in expressing cells, can correct XP-G. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms. XPGC cleaves one strand of the duplex at the border with the single-stranded region , .; GO: 0003697 single-stranded DNA binding, 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=43.46 E-value=19 Score=14.56 Aligned_cols=79 Identities=10% Similarity=-0.004 Sum_probs=37.5
Q ss_pred CCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCC
Q ss_conf 11222200018589999999999867982999958945899999867764887332345224552046684799981044
Q gi|254780947|r 382 IESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPIN 461 (1187)
Q Consensus 382 i~~~~~~~~~g~l~~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI~~~~~~~~~~~~~~~~~~~i~i~~~~L~ 461 (1187)
+...+...-...+......++....+..|+- ..-|..+..--.|||+-.||+++...--..+- .-.+....+.
T Consensus 822 ~~~ee~~~~e~f~~~~~~~lk~~~qqq~R~A-~~VT~~M~~E~QELL~lFGiPYI~APmEAEAQ------CA~L~~~~~~ 894 (1127)
T TIGR00600 822 ISLEELEALEAFLLAEQNSLKAKKQQQKRIA-AEVTGQMILESQELLRLFGIPYIVAPMEAEAQ------CAILDLLDLV 894 (1127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH------HHHHHHHCCC
T ss_conf 1244776466689999999865302200113-55766798998999985688733463127899------7897541475
Q ss_pred CCCCCC
Q ss_conf 687466
Q gi|254780947|r 462 QGFETK 467 (1187)
Q Consensus 462 ~GF~~~ 467 (1187)
.|-+++
T Consensus 895 ~G~iTD 900 (1127)
T TIGR00600 895 DGIITD 900 (1127)
T ss_pred CCEEEC
T ss_conf 614743
No 485
>PRK06370 mercuric reductase; Validated
Probab=43.44 E-value=19 Score=14.56 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=12.5
Q ss_pred HHHHHH-HHHHCCCCEEEEEC
Q ss_conf 799999-99862998999929
Q gi|254780947|r 28 EGFILA-EIARLGLSLVYICS 47 (1187)
Q Consensus 28 ~allla-~l~~~~rpilvI~~ 47 (1187)
-.+.+| .+++.+..+++|-.
T Consensus 15 AG~~AA~~aa~~G~~V~liEk 35 (459)
T PRK06370 15 AGPPLAARAAGLGMKVALIER 35 (459)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999968991999968
No 486
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.39 E-value=19 Score=14.56 Aligned_cols=56 Identities=23% Similarity=0.180 Sum_probs=34.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 60898037652279999999862998999929-98999999999998579980998572
Q gi|254780947|r 16 KKITLSPVIDGTEGFILAEIARLGLSLVYICS-DERILINLKKILTLVVPDIRVIIFPA 73 (1187)
Q Consensus 16 ~~i~l~Gl~gs~~allla~l~~~~rpilvI~~-d~~~A~~l~~dL~~f~~~~~V~~FP~ 73 (1187)
+-..++|...+--.-++..|++.+..+++... ++..++.+.+++.... .++.+++.
T Consensus 6 KValVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~ 62 (259)
T PRK12745 6 PVALVTGGRRGIGLGIALALAAGGFDLAINDRPDAEKLAATQQELRALG--VEVIFFPA 62 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCC--CCEEEEEC
T ss_conf 9999968678999999999998799899997986678999999998449--94899984
No 487
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=43.25 E-value=19 Score=14.54 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 99999999986798299995894589999986776488
Q gi|254780947|r 396 KFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF 433 (1187)
Q Consensus 396 ~L~~~I~~~~k~g~rViI~a~s~~~~eRL~elL~e~gI 433 (1187)
.+..-+.+....|+||+|.|.++.+++.|-+.|=.+.=
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~ 54 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSA 54 (144)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCH
T ss_conf 99999999997699699994899999999876323661
No 488
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=43.03 E-value=19 Score=14.52 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 88999998616546488861346747899999999638875797610
Q gi|254780947|r 848 EKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTS 894 (1187)
Q Consensus 848 ~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~Tt 894 (1187)
+..+++|+++.|+.+|..-+...++...++.+ ..+||.++++
T Consensus 56 ~~a~~~l~~~np~v~i~~~~~~~~~~~~~~~~-----~~~dvvi~~~ 97 (143)
T cd01483 56 EVAARRLNELNPGVNVTAVPEGISEDNLDDFL-----DGVDLVIDAI 97 (143)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH-----CCCCEEEECC
T ss_conf 99999998568983899994568964699997-----5999999877
No 489
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=42.99 E-value=19 Score=14.51 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=0.0
Q ss_pred H-CCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHH-----HCCC
Q ss_conf 0-36788853234-----34034899999999999999999999999887401--5677878467898998-----4888
Q gi|254780947|r 558 Y-STEITTVTLDK-----LGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHS--VPPLMVSQDLYSQFIK-----RFPH 624 (1187)
Q Consensus 558 Y-g~~~~~p~L~k-----LGg~~W~k~K~Kakk~v~diA~eLl~lyA~R~~~~--g~~f~~d~~~~~eFe~-----~Fpy 624 (1187)
| .|+=+.|.|+. |...--++...+......-+...|+.....+.+.+ ..-|-..++.|+.|-+ |..|
T Consensus 62 Ym~G~W~s~dL~~ll~~ll~~~~~~~~~~~~~~~~~~~~~~l~n~~s~~~s~~ni~~HYDlgNdfy~l~LD~~M~YSca~ 141 (383)
T PRK11705 62 YMDGWWECDRLDEFFSRVLRAGLENKLPHHFKDTLRILGARLFNLQSKKRAWIVGKEHYDLGNDLFSAMLDPRMQYSCGY 141 (383)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 84698417769999999998457775014389999999998850477001777755322788189997169874422121
Q ss_pred CCCHHHHHHHHHHHHHCC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 887448999999987605----9885414431665432489999999875112754999824366555899999986067
Q gi|254780947|r 625 VETEDQEKAIDAVIQDLS----SGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQG 700 (1187)
Q Consensus 625 eET~DQ~~AI~eV~~Dme----s~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~ 700 (1187)
-+.+|-|.+=+.=|-|.- .-+|=||++ |+|-|=--.|+.|| ++--+=|-++-|+++++.--++|.++
T Consensus 142 f~~~~tLe~AQ~~Kl~~i~~kl~l~~G~~VL--eIGcGWGgla~~aA-------~~~g~~VtgiTlS~eQ~~~a~~r~~g 212 (383)
T PRK11705 142 WKDADTLEEAQEAKLDLICRKLQLKPGMRVL--DIGCGWGGLARYAA-------EHYGVSVVGVTISAEQQKLAQERCAG 212 (383)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE--EECCCHHHHHHHHH-------HHCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 6999999999999999999864899999798--85787499999999-------97497599985889999999999738
Q ss_pred CCCCEEEEC
Q ss_conf 898335410
Q gi|254780947|r 701 FSVRIASIS 709 (1187)
Q Consensus 701 ~pv~i~~ls 709 (1187)
.+|+|.+..
T Consensus 213 l~v~v~l~D 221 (383)
T PRK11705 213 LPVEIRLQD 221 (383)
T ss_pred CCCEEEECC
T ss_conf 987899715
No 490
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=42.92 E-value=19 Score=14.50 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 05988541443166543248999999987511275499982
Q gi|254780947|r 641 LSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIA 681 (1187)
Q Consensus 641 mes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gkQvavlv 681 (1187)
+ ++.--|=++.|||=|+|||-.-=-.++....++-.+|||
T Consensus 138 g-~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlv 177 (218)
T COG3897 138 G-SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLV 177 (218)
T ss_pred C-CCCCEEEEEEECEECCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8-986403898503002835889889999999857977997
No 491
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=42.88 E-value=18 Score=14.67 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEECH
Q ss_conf 6302567777531225760898520
Q gi|254780947|r 712 VQTKEAALHKKSITEGQVDIVIGTH 736 (1187)
Q Consensus 712 ~~~~e~~~i~~~l~~G~idiviGTH 736 (1187)
.....|++.-..+-+--+|+|||+|
T Consensus 189 ~p~~~q~~~a~~lid~GaD~IiGhH 213 (239)
T smart00854 189 EPTDEQRELAHALIDAGADVVIGHH 213 (239)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999999976999999289
No 492
>PRK13531 regulatory ATPase RavA; Provisional
Probab=42.79 E-value=19 Score=14.49 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH
Q ss_conf 4324899999998751127549998243665558999999860678983354106663025
Q gi|254780947|r 656 GFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716 (1187)
Q Consensus 656 GfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e 716 (1187)
|+=--|-++|.+..|+.+|.-|-++-|--.=--.--+.++.+|.+-..==-+|+||.+|.|
T Consensus 21 gl~ERe~~i~l~lLaalagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeE 81 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEE 81 (498)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
T ss_conf 1144699999999999728946988899513889999999985574089999874698888
No 493
>KOG0635 consensus
Probab=42.74 E-value=19 Score=14.48 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 876514886089803765227999999986---299899992998999999999998
Q gi|254780947|r 8 ERISEKYCKKITLSPVIDGTEGFILAEIAR---LGLSLVYICSDERILINLKKILTL 61 (1187)
Q Consensus 8 ~~~~~k~~~~i~l~Gl~gs~~allla~l~~---~~rpilvI~~d~~~A~~l~~dL~~ 61 (1187)
+++....+--+-++||+||+++-++.+|.+ +...+.++...+.--.-|..||.|
T Consensus 24 q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F 80 (207)
T KOG0635 24 QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGF 80 (207)
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 998568996899742577880259999999998658658985485401043445676
No 494
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=42.68 E-value=19 Score=14.48 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4316654324899999998751127549998
Q gi|254780947|r 650 LICGDVGFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~RAafkav~~gkQvavl 680 (1187)
||||-.|-|||...- |-...+.....+..+
T Consensus 29 lIsG~tGSGKTTll~-al~~~i~~~~rivti 58 (186)
T cd01130 29 LISGGTGSGKTTLLN-ALLAFIPPDERIITI 58 (186)
T ss_pred EEECCCCCCHHHHHH-HHHHHCCCCCCEEEE
T ss_conf 998999998999999-999613345645984
No 495
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=42.54 E-value=19 Score=14.46 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99988740156778784678989984888887448999999987605988541443166543248999999987511275
Q gi|254780947|r 596 IAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGL 675 (1187)
Q Consensus 596 lyA~R~~~~g~~f~~d~~~~~eFe~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~gk 675 (1187)
..-.++-.+-+.+-.|...+.++...++-....=+.-.=++=..+|.+....|-+|++=||| .+++..+.|+..||
T Consensus 40 ~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~i~~g~~~l~~~~~~~~~D~vi~AIsG~----aGL~pt~~ai~~gk 115 (129)
T pfam02670 40 AEQIKEFKPKYVAVADEEAAEELKEALAGAGLKTEVLAGEEGLCELAALPEADIVVNAIVGA----AGLLPTLAAIKAGK 115 (129)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCCEEEEECCCC----CHHHHHHHHHHCCC
T ss_conf 99999739979999589999999986324788737987889999997077889999815650----13999999998699
Q ss_pred EEEE
Q ss_conf 4999
Q gi|254780947|r 676 QVAV 679 (1187)
Q Consensus 676 Qvav 679 (1187)
-+|+
T Consensus 116 ~iaL 119 (129)
T pfam02670 116 TIAL 119 (129)
T ss_pred EEEE
T ss_conf 8999
No 496
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=42.53 E-value=19 Score=14.46 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCCE-EEECCCCCCHHHHHHHHH
Q ss_conf 89999999876059885414-431665432489999999
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDR-LICGDVGFGKTEIALRAA 667 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDR-LiCGDVGfGKTEVA~RAa 667 (1187)
|..+++..++-+++++-=-= |+||--|.|||=+|.+.|
T Consensus 22 qe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A 60 (363)
T PRK07471 22 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMA 60 (363)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 199999999999859976458767999818899999999
No 497
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=42.47 E-value=19 Score=14.45 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEEEEECCCC----CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 5999826446----9288999998616546488861346747899999999638875797610
Q gi|254780947|r 836 QSFYVCPRLS----DLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTS 894 (1187)
Q Consensus 836 Qvf~v~nrv~----~i~~~~~~l~~l~p~~~i~vaHGqm~~~~le~~m~~F~~~~~dvLv~Tt 894 (1187)
|+.|-.+.|. .....+++|+++-|+++|..-+...++..+++.+.++ |+.|.-|
T Consensus 67 Q~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~~l~~~n~~~li~~~-----DlViD~t 124 (337)
T PRK12475 67 QQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVTDVTVEEMEELIKEV-----DLIIDAT 124 (337)
T ss_pred CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHHCCCHHHHHHHHHHC-----CEEEECC
T ss_conf 300222121557488999999998449997447513119979999998618-----8999888
No 498
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=42.29 E-value=19 Score=14.44 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4324899999998751127549998
Q gi|254780947|r 656 GFGKTEIALRAAFIAVMNGLQVAVI 680 (1187)
Q Consensus 656 GfGKTEVA~RAafkav~~gkQvavl 680 (1187)
|-|||-+||--|-.-+..|+.|+++
T Consensus 11 GvGKTTtavnLA~aLA~~G~rVllI 35 (261)
T pfam09140 11 GSGKSTTAVHVAVALLYLGARVATI 35 (261)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8729999999999999889978999
No 499
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=42.27 E-value=18 Score=14.73 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHH
Q ss_conf 4316654324899999
Q gi|254780947|r 650 LICGDVGFGKTEIALR 665 (1187)
Q Consensus 650 LiCGDVGfGKTEVA~R 665 (1187)
+++||-|-|||-...|
T Consensus 5 ~liGd~~VGKTsli~r 20 (175)
T cd01870 5 VIVGDGACGKTCLLIV 20 (175)
T ss_pred EEECCCCCCHHHHHHH
T ss_conf 9999899669999999
No 500
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=42.21 E-value=19 Score=14.43 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEE----------------ECHHHHHHH--HHHHHHH--HHCCCCCCEEE----
Q ss_conf 16654324899999998751127549998----------------243665558--9999998--60678983354----
Q gi|254780947|r 652 CGDVGFGKTEIALRAAFIAVMNGLQVAVI----------------APTTLLVRQ--HFRLFSE--RFQGFSVRIAS---- 707 (1187)
Q Consensus 652 CGDVGfGKTEVA~RAafkav~~gkQvavl----------------vPTTiLa~Q--H~~tf~~--Rf~~~pv~i~~---- 707 (1187)
||==||+ ||-+|++-|-.||+. +||-=|-.- -|+.+++ .+..|+|.+..
T Consensus 131 ~G~GGy~-------AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~~~GI~~~~~g~~ 203 (673)
T PTZ00153 131 CGVGGHA-------AAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIHSDAFGKN 203 (673)
T ss_pred CCCCHHH-------HHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8762899-------999999849869999368787477242777321199998735799886145565337511323433
Q ss_pred -----------------ECCCCCCHHHHHHHHHHCCCC---------------CEEEEECHHHHCCCC
Q ss_conf -----------------106663025677775312257---------------608985206542785
Q gi|254780947|r 708 -----------------ISRFVQTKEAALHKKSITEGQ---------------VDIVIGTHALLNPKI 743 (1187)
Q Consensus 708 -----------------lsRf~~~~e~~~i~~~l~~G~---------------idiviGTH~ll~~~v 743 (1187)
+.+=+-.+..+.+.+.|..|- ||++=|+-+++.+.+
T Consensus 204 ~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~i~~~~~ 271 (673)
T PTZ00153 204 GKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGHIIDKNI 271 (673)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEEECCCCE
T ss_conf 32221111222354211569999999999999875017767540676666663599933037714634
Done!