HHsearch alignment for GI: 254780947 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=98.37 E-value=1.1e-05 Score=62.53 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 899999998760598854144316654324899999998751----1275499982436655589999998606789833
Q gi|254780947|r 630 QEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAV----MNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRI 705 (1187)
Q Consensus 630 Q~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav----~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i 705 (1187)
T Consensus 2 Q~~gv~wl~~-~~~~-~~ggiLaDeMGLGKTiq~i-a~l~~~~~~~~~~~~~LIV~P~sl~~~-W~~Ei~~~~~~~~~~~ 77 (295)
T pfam00176 2 QLEGVNWLIS-LYNN-GLGGILADEMGLGKTLQTI-SLLAYLKELKPLAGPHLVVCPLSTLDN-WLNEFEKWAPDLNIVV 77 (295)
T ss_pred HHHHHHHHHH-HHHC-CCCEEEECCCCCCHHHHHH-HHHHHHHHHCCCCCCEEEEECHHHHHH-HHHHHHHHCCCCCEEE
T ss_conf 7889999999-8727-9998972278757999999-999999983889998899975788876-7889998679970799
Q ss_pred EEECCCCCCHHHH-HHHHHHCCCCCEEEEECHHHHCCCCC-CCC--CCEEEEECHHHH---HHHHHHHHHHCCCCCCEEE
Q ss_conf 5410666302567-77753122576089852065427852-023--656997222330---0888998863167884899
Q gi|254780947|r 706 ASISRFVQTKEAA-LHKKSITEGQVDIVIGTHALLNPKIT-FAN--LGLIIIDEEQHF---GVKHKEALKETHTGVHVLT 778 (1187)
Q Consensus 706 ~~lsRf~~~~e~~-~i~~~l~~G~idiviGTH~ll~~~v~-f~~--LgLliiDEEqrF---GV~~Ke~lk~~~~~vdvLt 778 (1187)
T Consensus 78 ~~~~----~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~~~~w~~vI~DEaH~iKN~~s~~~~a~~~l~~~-~r~~ 152 (295)
T pfam00176 78 YYGD----GDSRSELLRNVLRTGKFDVLITSYEYIRRDKDELHKANWRYVILDEGHRIKNAKSKLSLALKSLKTN-NRLL 152 (295)
T ss_pred EEEC----HHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-CEEE
T ss_conf 9847----0768999886774168859993099999759998408765899876201258788999999952358-1899
Q ss_pred EECCCCCHHHH
Q ss_conf 95353408899
Q gi|254780947|r 779 LSATPIPRTLQ 789 (1187)
Q Consensus 779 lsATPIPRTL~ 789 (1187)
T Consensus 153 LTGTPiqN~l~ 163 (295)
T pfam00176 153 LTGTPIQNNLA 163 (295)
T ss_pred EECCCCCCCHH
T ss_conf 86874558889