HHsearch alignment for GI: 254780947 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.34 E-value=0.9 Score=24.70 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHH----HHCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 888744899999998----76059885414-4316654324899999998751127549998243665558999999860
Q gi|254780947|r 624 HVETEDQEKAIDAVI----QDLSSGRLMDR-LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERF 698 (1187)
Q Consensus 624 yeET~DQ~~AI~eV~----~Dmes~~PMDR-LiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf 698 (1187)
T Consensus 23 l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiA-k~~~~~~-~~~s~~---------------- 84 (234)
T pfam05496 23 LDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIA-NEMGVNI-RITSGP---------------- 84 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HHHCCCE-EEECCH----------------
T ss_conf 6660694999999999999887427776627887899998889999999-8408753-761426----------------
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH-HCCC-CCCE
Q ss_conf 6789833541066630256777753122576089852065427852023656997222330088899886-3167-8848
Q gi|254780947|r 699 QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALK-ETHT-GVHV 776 (1187)
Q Consensus 699 ~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk-~~~~-~vdv 776 (1187)
T Consensus 85 --------~---i~~~~di~~~l~~~~~~~---------------------ILFIDEIHr~nK~qqd~Llp~vE~g~i~i 132 (234)
T pfam05496 85 --------A---LEKPGDLAAILTNLEPGD---------------------VLFIDEIHRLNRAVEEILYPAMEDFRLDI 132 (234)
T ss_pred --------H---HHHHHHHHHHHHHCCCCC---------------------EEEEECHHHCCHHHHHHCCCCCCCCEEEE
T ss_conf --------6---643899999998458998---------------------89996654358768874455334616999
Q ss_pred EEEE-------CCCCCHHHHHHHHCCC-CCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 9995-------3534088999971222-541220157887753799985797898999998987
Q gi|254780947|r 777 LTLS-------ATPIPRTLQLAITGVR-ELSLISMPPINRIACRTSISIFDPLVVRETLMREYY 832 (1187)
Q Consensus 777 Ltls-------ATPIPRTL~msl~g~r-d~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~ 832 (1187)
T Consensus 133 ~ig~~~~A~~~~~e~P~---FtLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~ 193 (234)
T pfam05496 133 VIGKGPSARSIRLDLPP---FTLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSAR 193 (234)
T ss_pred EECCCCCCEEEECCCCC---EEEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
T ss_conf 96367663246526897---59985215666477779976211244246899999999999999