HHsearch alignment for GI: 254780947 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.34  E-value=0.9  Score=24.70  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=73.0

Q ss_pred             CCCCHHHHHHHHHHH----HHCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf             888744899999998----76059885414-4316654324899999998751127549998243665558999999860
Q gi|254780947|r  624 HVETEDQEKAIDAVI----QDLSSGRLMDR-LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERF  698 (1187)
Q Consensus       624 yeET~DQ~~AI~eV~----~Dmes~~PMDR-LiCGDVGfGKTEVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf  698 (1187)
T Consensus        23 l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiA-k~~~~~~-~~~s~~----------------   84 (234)
T pfam05496        23 LDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIA-NEMGVNI-RITSGP----------------   84 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HHHCCCE-EEECCH----------------
T ss_conf             6660694999999999999887427776627887899998889999999-8408753-761426----------------


Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH-HCCC-CCCE
Q ss_conf             6789833541066630256777753122576089852065427852023656997222330088899886-3167-8848
Q gi|254780947|r  699 QGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALK-ETHT-GVHV  776 (1187)
Q Consensus       699 ~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~idiviGTH~ll~~~v~f~~LgLliiDEEqrFGV~~Ke~lk-~~~~-~vdv  776 (1187)
T Consensus        85 --------~---i~~~~di~~~l~~~~~~~---------------------ILFIDEIHr~nK~qqd~Llp~vE~g~i~i  132 (234)
T pfam05496        85 --------A---LEKPGDLAAILTNLEPGD---------------------VLFIDEIHRLNRAVEEILYPAMEDFRLDI  132 (234)
T ss_pred             --------H---HHHHHHHHHHHHHCCCCC---------------------EEEEECHHHCCHHHHHHCCCCCCCCEEEE
T ss_conf             --------6---643899999998458998---------------------89996654358768874455334616999


Q ss_pred             EEEE-------CCCCCHHHHHHHHCCC-CCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf             9995-------3534088999971222-541220157887753799985797898999998987
Q gi|254780947|r  777 LTLS-------ATPIPRTLQLAITGVR-ELSLISMPPINRIACRTSISIFDPLVVRETLMREYY  832 (1187)
Q Consensus       777 Ltls-------ATPIPRTL~msl~g~r-d~S~i~tpP~~R~~v~T~v~~~~~~~i~~ai~rEl~  832 (1187)
T Consensus       133 ~ig~~~~A~~~~~e~P~---FtLIgATTe~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~  193 (234)
T pfam05496       133 VIGKGPSARSIRLDLPP---FTLVGATTRAGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSAR  193 (234)
T ss_pred             EECCCCCCEEEECCCCC---EEEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
T ss_conf             96367663246526897---59985215666477779976211244246899999999999999