HHsearch alignment for GI: 254780947 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=90.29 E-value=0.47 Score=26.84 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=33.1
Q ss_pred CCEEEECCCCCCHHHHHHHHH-----HHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 860898037652279999999-----8629989999299899999999999857
Q gi|254780947|r 15 CKKITLSPVIDGTEGFILAEI-----ARLGLSLVYICSDERILINLKKILTLVV 63 (1187)
Q Consensus 15 ~~~i~l~Gl~gs~~allla~l-----~~~~rpilvI~~d~~~A~~l~~dL~~f~ 63 (1187)
T Consensus 19 gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~e-e~~~~l~~~~~~~g 71 (231)
T pfam06745 19 GRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLE-EPPEDLRENAKSFG 71 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHHHCC
T ss_conf 969999858972599999999999998658968999813-79999999999829