HHsearch alignment for GI: 254780947 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.59 E-value=0.00019 Score=53.07 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCCCHH-HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC-CEEE
Q ss_conf 543248-99999998751127549998243665558999999860678983354106663025677775312257-6089
Q gi|254780947|r 655 VGFGKT-EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQ-VDIV 732 (1187)
Q Consensus 655 VGfGKT-EVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~-idiv 732 (1187)
T Consensus 11 PGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~~Em~e----AL~g~~vr~------~t~a~~~----~~~~~~ivdvm 76 (146)
T pfam07652 11 PGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVLAEMEE----ALRGLPIRY------HTPAVSS----EHTGREIVDVM 76 (146)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH----HHCCCCCEE------ECHHHHC----CCCCCCEEEEE
T ss_conf 999970224899999999728618997727999999999----975899467------5234313----66888418897
Q ss_pred E---ECHHHHCCCCCCCCCCEEEEECHHHHHHHH---HHHHHHC--CCCCCEEEEECCCC
Q ss_conf 8---520654278520236569972223300888---9988631--67884899953534
Q gi|254780947|r 733 I---GTHALLNPKITFANLGLIIIDEEQHFGVKH---KEALKET--HTGVHVLTLSATPI 784 (1187)
Q Consensus 733 i---GTH~ll~~~v~f~~LgLliiDEEqrFGV~~---Ke~lk~~--~~~vdvLtlsATPI 784 (1187)
T Consensus 77 CHAT~t~r~l~-~~~~~ny~viIMDE~H~~DP~SIAarG~~~~~~~~g~~a~i~mTATPP 135 (146)
T pfam07652 77 CHATFTQRLLS-PVRVPNYEVIIMDEAHFTDPASIAARGYISTLVELGEAAAIFMTATPP 135 (146)
T ss_pred CHHHHHHHHHC-CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 15988889736-888564479998512238989999889999885438657999956899