HHsearch alignment for GI: 254780947 and conserved domain: pfam07652

>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.59  E-value=0.00019  Score=53.07  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=76.2

Q ss_pred             CCCCHH-HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC-CEEE
Q ss_conf             543248-99999998751127549998243665558999999860678983354106663025677775312257-6089
Q gi|254780947|r  655 VGFGKT-EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQ-VDIV  732 (1187)
Q Consensus       655 VGfGKT-EVA~RAafkav~~gkQvavlvPTTiLa~QH~~tf~~Rf~~~pv~i~~lsRf~~~~e~~~i~~~l~~G~-idiv  732 (1187)
T Consensus        11 PGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~~Em~e----AL~g~~vr~------~t~a~~~----~~~~~~ivdvm   76 (146)
T pfam07652        11 PGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVLAEMEE----ALRGLPIRY------HTPAVSS----EHTGREIVDVM   76 (146)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH----HHCCCCCEE------ECHHHHC----CCCCCCEEEEE
T ss_conf             999970224899999999728618997727999999999----975899467------5234313----66888418897


Q ss_pred             E---ECHHHHCCCCCCCCCCEEEEECHHHHHHHH---HHHHHHC--CCCCCEEEEECCCC
Q ss_conf             8---520654278520236569972223300888---9988631--67884899953534
Q gi|254780947|r  733 I---GTHALLNPKITFANLGLIIIDEEQHFGVKH---KEALKET--HTGVHVLTLSATPI  784 (1187)
Q Consensus       733 i---GTH~ll~~~v~f~~LgLliiDEEqrFGV~~---Ke~lk~~--~~~vdvLtlsATPI  784 (1187)
T Consensus        77 CHAT~t~r~l~-~~~~~ny~viIMDE~H~~DP~SIAarG~~~~~~~~g~~a~i~mTATPP  135 (146)
T pfam07652        77 CHATFTQRLLS-PVRVPNYEVIIMDEAHFTDPASIAARGYISTLVELGEAAAIFMTATPP  135 (146)
T ss_pred             CHHHHHHHHHC-CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             15988889736-888564479998512238989999889999885438657999956899