HHsearch alignment for GI: 254780947 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=3.3e-16 Score=143.60 Aligned_cols=165 Identities=27% Similarity=0.303 Sum_probs=132.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 8488888744899999998760598854144316654324899999998751127--54999824366555899999986
Q gi|254780947|r 620 KRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG--LQVAVIAPTTLLVRQHFRLFSER 697 (1187)
Q Consensus 620 ~~FpyeET~DQ~~AI~eV~~Dmes~~PMDRLiCGDVGfGKTEVA~RAafkav~~g--kQvavlvPTTiLa~QH~~tf~~R 697 (1187)
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~-----~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGL-----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CCCCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 1379999988999999998389-----98899899996099999999999863389975999908599999999886010
Q ss_pred HCCCC-CCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC-----HHHHCCCCCCCCCCEEEEECHHHHHH-HHHHHH---
Q ss_conf 06789-833541066630256777753122576089852-----06542785202365699722233008-889988---
Q gi|254780947|r 698 FQGFS-VRIASISRFVQTKEAALHKKSITEGQVDIVIGT-----HALLNPKITFANLGLIIIDEEQHFGV-KHKEAL--- 767 (1187)
Q Consensus 698 f~~~p-v~i~~lsRf~~~~e~~~i~~~l~~G~idiviGT-----H~ll~~~v~f~~LgLliiDEEqrFGV-~~Ke~l--- 767 (1187)
T Consensus 78 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~ 153 (201)
T smart00487 78 GPSLGLKVVGLYGG----DSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred CCCCEEEEEEEECC----CCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 21020445565247----73799999997599989995589999999727545254319999896775125709999999
Q ss_pred -HHCCCCCCEEEEECCCC---CHHHHHHHH
Q ss_conf -63167884899953534---088999971
Q gi|254780947|r 768 -KETHTGVHVLTLSATPI---PRTLQLAIT 793 (1187)
Q Consensus 768 -k~~~~~vdvLtlsATPI---PRTL~msl~ 793 (1187)
T Consensus 154 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 183 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 996799997899924898689999999789