BLAST/PSIBLAST alignment of GI: 254780947 and GI: 15889082 at iteration 1
>gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens str. C58] Length = 1165
>gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens str. C58] Length = 1165
 Score = 1333 bits (3450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1170 (54%), Positives = 841/1170 (71%), Gaps = 9/1170 (0%)

Query: 1    MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
            MI G D + ++      +T+  V  G E  +LA++AR G S+ Y+ SD + + +L++IL 
Sbjct: 1    MIAGFDAKLVASADTP-LTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILG 59

Query: 61   LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
             V PDI V+  PAWDCLPYDRVSPS     RRL+ ++ L++        +VL TV+A++ 
Sbjct: 60   FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQ 119

Query: 121  RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
            +      I+    S +  +QI M  +  +LE NGF RV  V +VGE+AVRGGILDV+ P 
Sbjct: 120  KMAPRDVIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPG 179

Query: 181  KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
             + PVRLDFFG+T++S+R FD ++QRTI +    ++N +SEV LT   I RFR+NYL+ F
Sbjct: 180  TEEPVRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLF 239

Query: 241  GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
            G  T++D LY A+S+GRRY GMEHWLP FY+ +ET F YL  F I+TD   KE A++RS+
Sbjct: 240  GAATRDDALYQAVSEGRRYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAKEAAKERSK 299

Query: 301  LIQDYYEARLQYSSDK--KQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQET 358
            L+ DYYEAR      K   Q + YKP++P ++YL+ + F+A + + +  V++T FN+ ++
Sbjct: 300  LVLDYYEARRASGETKGSTQGAPYKPVSPGQIYLDGKSFEAALASVNA-VRLTPFNEHDS 358

Query: 359  AHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQ 418
                V  L+A  G  W     +     D+ E    FD  + H+A++  KG K +I+  S+
Sbjct: 359  EGRPVATLDAHVGPRWARPPTEG----DSEERVNVFDLAVKHIAERRAKGWKVLITGWSE 414

Query: 419  GALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLL 478
            G+L  L+ ++  HG +KIK + +L E+  L K E A  +L +  GFET  + ++ E D+L
Sbjct: 415  GSLDRLLQVLNEHGLEKIKPVTSLKEVKKLGKGEAACAVLSLEAGFETGTLAVIGEQDIL 474

Query: 479  GKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELH 538
            G ++ RR  R+K   A    + + ++EG+++VHAEHGIGRFV L +IE +G    CLELH
Sbjct: 475  GDRMVRRSKRRKR-GADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELH 533

Query: 539  YADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAA 598
            YAD+AKLF+PVENIDL+SRY ++    TLDKLGG AW+ RKA LKKRL D+A +L+ IAA
Sbjct: 534  YADDAKLFLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAA 593

Query: 599  KRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFG 658
             R +   P L+    LY +F  RFP+ ETEDQ  AI+AV  DL +GR MDRLICGDVGFG
Sbjct: 594  ARLVRHAPALIAPDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFG 653

Query: 659  KTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAA 718
            KTE+ALRAAF+A MNG+QVAV+ PTTLL RQHFR FSERF+G  +R+   SR V +KE A
Sbjct: 654  KTEVALRAAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELA 713

Query: 719  LHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLT 778
            L KK + EG+ DIV+GTHALL   I+FANLGL+IIDEEQHFGVKHKE LKE  + VHVLT
Sbjct: 714  LTKKEVAEGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLT 773

Query: 779  LSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSF 838
            LSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FDPLV+RETLMRE+YRGGQSF
Sbjct: 774  LSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSF 833

Query: 839  YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVES 898
            YVCPRL+DL   + FLQS+VPELK+A+AHGQM+   LED MNAFY+G+YDVLLST+IVES
Sbjct: 834  YVCPRLADLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVES 893

Query: 899  GLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRIL 958
            GLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT  A++RL++L
Sbjct: 894  GLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVL 953

Query: 959  QSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLV 1018
            QSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +KG +++ 
Sbjct: 954  QSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEEVR 1013

Query: 1019 ESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIE 1078
            +S WSPQ+ +  SVMIPE YV D++LR+ LYRRLG + D ++I  F  EM+DRFGPLP E
Sbjct: 1014 DSGWSPQISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKE 1073

Query: 1079 VIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPD 1138
            V HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP AL+ YI +Q     IRPD
Sbjct: 1074 VQHLLKIVYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPD 1133

Query: 1139 QNLVFDCLLPTINQRFFEAKRIITHLINMT 1168
             +L  +  LPT  +R   A  ++T L  + 
Sbjct: 1134 HSLFLNRDLPTPEKRLTGAAMVMTQLAELA 1163