BLAST/PSIBLAST alignment of GI: 254780947 and GI: 15889082 at iteration 1
>gi|15889082|ref|NP_354763.1| transcription-repair coupling factor [Agrobacterium tumefaciens str. C58] Length = 1165
>gi|15156884|gb|AAK87548.1| transcription-repair coupling factor [Agrobacterium tumefaciens str. C58] Length = 1165
Score = 1333 bits (3450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/1170 (54%), Positives = 841/1170 (71%), Gaps = 9/1170 (0%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D + ++ +T+ V G E +LA++AR G S+ Y+ SD + + +L++IL
Sbjct: 1 MIAGFDAKLVASADTP-LTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILG 59
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ PAWDCLPYDRVSPS RRL+ ++ L++ +VL TV+A++
Sbjct: 60 FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQ 119
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
+ I+ S + +QI M + +LE NGF RV V +VGE+AVRGGILDV+ P
Sbjct: 120 KMAPRDVIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPG 179
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
+ PVRLDFFG+T++S+R FD ++QRTI + ++N +SEV LT I RFR+NYL+ F
Sbjct: 180 TEEPVRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLF 239
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G T++D LY A+S+GRRY GMEHWLP FY+ +ET F YL F I+TD KE A++RS+
Sbjct: 240 GAATRDDALYQAVSEGRRYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAKEAAKERSK 299
Query: 301 LIQDYYEARLQYSSDK--KQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQET 358
L+ DYYEAR K Q + YKP++P ++YL+ + F+A + + + V++T FN+ ++
Sbjct: 300 LVLDYYEARRASGETKGSTQGAPYKPVSPGQIYLDGKSFEAALASVNA-VRLTPFNEHDS 358
Query: 359 AHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQ 418
V L+A G W + D+ E FD + H+A++ KG K +I+ S+
Sbjct: 359 EGRPVATLDAHVGPRWARPPTEG----DSEERVNVFDLAVKHIAERRAKGWKVLITGWSE 414
Query: 419 GALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLL 478
G+L L+ ++ HG +KIK + +L E+ L K E A +L + GFET + ++ E D+L
Sbjct: 415 GSLDRLLQVLNEHGLEKIKPVTSLKEVKKLGKGEAACAVLSLEAGFETGTLAVIGEQDIL 474
Query: 479 GKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELH 538
G ++ RR R+K A + + ++EG+++VHAEHGIGRFV L +IE +G CLELH
Sbjct: 475 GDRMVRRSKRRKR-GADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELH 533
Query: 539 YADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAA 598
YAD+AKLF+PVENIDL+SRY ++ TLDKLGG AW+ RKA LKKRL D+A +L+ IAA
Sbjct: 534 YADDAKLFLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAA 593
Query: 599 KRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFG 658
R + P L+ LY +F RFP+ ETEDQ AI+AV DL +GR MDRLICGDVGFG
Sbjct: 594 ARLVRHAPALIAPDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFG 653
Query: 659 KTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAA 718
KTE+ALRAAF+A MNG+QVAV+ PTTLL RQHFR FSERF+G +R+ SR V +KE A
Sbjct: 654 KTEVALRAAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELA 713
Query: 719 LHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLT 778
L KK + EG+ DIV+GTHALL I+FANLGL+IIDEEQHFGVKHKE LKE + VHVLT
Sbjct: 714 LTKKEVAEGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLT 773
Query: 779 LSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSF 838
LSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FDPLV+RETLMRE+YRGGQSF
Sbjct: 774 LSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSF 833
Query: 839 YVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVES 898
YVCPRL+DL + FLQS+VPELK+A+AHGQM+ LED MNAFY+G+YDVLLST+IVES
Sbjct: 834 YVCPRLADLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVES 893
Query: 899 GLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRIL 958
GLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT A++RL++L
Sbjct: 894 GLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVL 953
Query: 959 QSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLV 1018
QSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +KG +++
Sbjct: 954 QSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEEVR 1013
Query: 1019 ESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIE 1078
+S WSPQ+ + SVMIPE YV D++LR+ LYRRLG + D ++I F EM+DRFGPLP E
Sbjct: 1014 DSGWSPQISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKE 1073
Query: 1079 VIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPD 1138
V HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP AL+ YI +Q IRPD
Sbjct: 1074 VQHLLKIVYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPD 1133
Query: 1139 QNLVFDCLLPTINQRFFEAKRIITHLINMT 1168
+L + LPT +R A ++T L +
Sbjct: 1134 HSLFLNRDLPTPEKRLTGAAMVMTQLAELA 1163