BLAST/PSIBLAST alignment of GI: 254780947 and GI: 15965404 at iteration 1
>gi|15965404|ref|NP_385757.1| transcription-repair coupling factor (TRCF) protein [Sinorhizobium meliloti 1021] Length = 1171
>gi|15074585|emb|CAC46230.1| Probable transcription-repair coupling factor (TRCF) protein [Sinorhizobium meliloti 1021] Length = 1171
 Score = 1318 bits (3411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1173 (54%), Positives = 837/1173 (71%), Gaps = 10/1173 (0%)

Query: 1    MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
            MI G D  +I     ++IT+ PV  G E  +LAE+AR G  + YI SD + + +L+++L 
Sbjct: 3    MIPGFDPRKILAA-TREITIGPVPTGAEALVLAELARAGAPVAYILSDGQKVADLEQVLG 61

Query: 61   LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
             V PDI V+  P WDCLPYDRVSPS     RRL+ +S L++        IVL T++A + 
Sbjct: 62   FVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQ 121

Query: 121  RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
            R      I+    + +  +QI M  +  +LE NGF+RV  V ++GE+AVRGGILDVY P 
Sbjct: 122  RISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPG 181

Query: 181  KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
               P+RLDFFG+T++++R FD ++QRTI ++   ++N +SEV LT + IS FR+ YL+ F
Sbjct: 182  SGEPLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLF 241

Query: 241  GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
            G  T++D LY A+S+GRRY GMEHWLP FY  +ET+F YL  F I+TD L +E A +RS+
Sbjct: 242  GAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSK 301

Query: 301  LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
            L+ DYY+ARL  +S  K    Q + YKP+ P+ LYL  + F   +   +  V+++ F + 
Sbjct: 302  LVLDYYDARLASASPGKSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNA-VRLSPFTEH 360

Query: 357  ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISAS 416
            E    +VV++ A  G  W   A    E+ ++      FD+ + H+A++  KG K I+S  
Sbjct: 361  EGEARQVVNIEARQGLRWAKPAG---EADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGW 417

Query: 417  SQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD 476
            ++G+L  L+ ++  HG   I+ +  L++I SL   E A+ +L +  GFET  ++++ E D
Sbjct: 418  TEGSLDRLLQVLAEHGLANIRPVKALSDIGSLKPGEAASAVLSLEAGFETGDLVVIGEQD 477

Query: 477  LLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE 536
            +LG ++ RR  R+K   A    + + ++EG+ +VHAEHGIGRFV L +IE +G  HDCLE
Sbjct: 478  ILGDRLVRRSKRRKR-GADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLE 536

Query: 537  LHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI 596
            L YAD+AKLF+PVENI+L+SRY +E T   LDKLGG AW+ RKA LKKRL D+A  L+ I
Sbjct: 537  LVYADDAKLFLPVENIELLSRYGSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRI 596

Query: 597  AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVG 656
            AA+R     P L     +Y +F  RFP+ ETEDQ  +IDAV  DL  GR MDRL+CGDVG
Sbjct: 597  AAERHTRHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVG 656

Query: 657  FGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716
            FGKTE+ALRAAFIA MNG+QVAV+ PTTLL RQHF+ FS+RF+G  +RI   SR V +K+
Sbjct: 657  FGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKD 716

Query: 717  AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV 776
             AL KK + EG+ DIV+GTHALL   I FANLGL+IIDEEQHFGVKHKE LKE  T VHV
Sbjct: 717  LALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHV 776

Query: 777  LTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQ 836
            LTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+YRGGQ
Sbjct: 777  LTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQ 836

Query: 837  SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896
            SFYVCPR+SDL + + FL+S+VPELK+A+AHGQM    LED MNAFYEG+YDVLLST+IV
Sbjct: 837  SFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIV 896

Query: 897  ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR 956
            ESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT  A++RL+
Sbjct: 897  ESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLK 956

Query: 957  ILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKD 1016
            +LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +KG+++
Sbjct: 957  VLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEE 1016

Query: 1017 LVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLP 1076
            + ++ WSPQ+ +   VMIPE YV D+NLRL LYRRLG +TD  +I  F  E++DRFGPLP
Sbjct: 1017 IHDTGWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLP 1076

Query: 1077 IEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIR 1136
             EV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP AL+ YIA+Q     IR
Sbjct: 1077 TEVQHLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIR 1136

Query: 1137 PDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
            PDQ++ F   L T  +R   A  ++T L  +  
Sbjct: 1137 PDQSIFFQRELATPEKRLSGAAMVMTQLAALAK 1169