BLAST/PSIBLAST alignment of GI: 254780947 and GI: 227822023 at iteration 1
>gi|227822023|ref|YP_002825994.1| putative transcription-repair coupling factor [Sinorhizobium fredii NGR234] Length = 1170
>gi|227341023|gb|ACP25241.1| putative transcription-repair coupling factor [Sinorhizobium fredii NGR234] Length = 1170
 Score = 1314 bits (3400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/1173 (54%), Positives = 838/1173 (71%), Gaps = 9/1173 (0%)

Query: 1    MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
            MI G D ++I     +++T+ PV  G E  ILA++AR G  + Y  SD + + +L+++L 
Sbjct: 1    MIPGLDSKKIFAS-AREVTIGPVPSGAEALILADLARAGAPVAYFLSDGQRIADLEQVLG 59

Query: 61   LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
             V PDI V+  P WDCLPYDRVSPS     RRL+ +S L++        IVL TV+A + 
Sbjct: 60   FVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPAIVLVTVNAALQ 119

Query: 121  RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
            +      I+    S +  +Q+ M  +  +LE NGF+RV  V +VGE+AVRGGILDVY P 
Sbjct: 120  KISPQDVIESLAFSARPGNQVRMDDLAAQLERNGFERVPTVREVGEFAVRGGILDVYVPG 179

Query: 181  KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
               P+RLDFFG+T++++R FD ++QRT  ++   ++N +SEV LT + IS FR+ YL+ F
Sbjct: 180  SGEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSLF 239

Query: 241  GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
            G  T++D LY A+S+GRRY GMEHWLP FY  +ETIF YL  F I+TD L +E A +RS+
Sbjct: 240  GAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLEGFRIVTDHLAREAAAERSK 299

Query: 301  LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
            LI DYYEAR   +S  K    Q + YKP+ PE LYL+ Q F A +   H  V+++ F++ 
Sbjct: 300  LILDYYEARHASASPSKSQISQGTPYKPVPPELLYLSAQGFSAGLTERHA-VRLSPFSEH 358

Query: 357  ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISAS 416
            E    +V+ + A  G  W  +A +  E   +      FD+ + H+A++  KG K +IS  
Sbjct: 359  EGEARQVMTVEARQGVRWAKTAGETEEG--DGARANVFDQAVKHIAERRAKGAKVVISGW 416

Query: 417  SQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD 476
            ++G+L  L+ ++  HG   I+ +  L ++ SL   E A+ +L +  GFET  ++++ E D
Sbjct: 417  TEGSLDRLLQVLAEHGLANIRPVKALADLRSLKPGEAASAVLSLESGFETGDLVVIGEQD 476

Query: 477  LLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE 536
            +LG ++ RR  R+K   A    + + ++EG+ +VHAEHGIGRFV L +IE +G  HDCLE
Sbjct: 477  ILGDRMVRRSKRRKR-GADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLE 535

Query: 537  LHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI 596
            L YA++AKLF+PVENI+L+SRY +E T   LDKLGG AW+ RKA LKKRL D+A  L+ I
Sbjct: 536  LVYAEDAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRI 595

Query: 597  AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVG 656
            AA+R     P L+    +Y +F  RFP+ ETEDQ  +I+AV  DL  GR MDRL+CGDVG
Sbjct: 596  AAERHTRHAPALVAQDGVYDEFAARFPYEETEDQLNSIEAVRDDLGGGRPMDRLVCGDVG 655

Query: 657  FGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716
            FGKTE+ALRAAFIA MNG+QVAV+ PTTLL RQHF+ FS+RF+G  +RI   SR V +K+
Sbjct: 656  FGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKD 715

Query: 717  AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV 776
             AL KK + +G+ DIV+GTHALL   I FANLGL+IIDEEQHFGVKHKE LKE  T VHV
Sbjct: 716  LALTKKEVADGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHV 775

Query: 777  LTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQ 836
            LTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+YRGGQ
Sbjct: 776  LTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQ 835

Query: 837  SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896
            SFYVCPRLSDL + + FL+S+VPELK+A+AHGQM    LED MNAFYEG+YDVLLST+IV
Sbjct: 836  SFYVCPRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIV 895

Query: 897  ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR 956
            ESGLD+P ANT++V RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT  A++RL+
Sbjct: 896  ESGLDVPTANTLVVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLK 955

Query: 957  ILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKD 1016
            +LQSL+TLGAGFQLAS+DLDIRG GNLLG EQSGHI+E+GFELYQ+MLEE VA +KG+++
Sbjct: 956  VLQSLDTLGAGFQLASHDLDIRGAGNLLGGEQSGHIKEVGFELYQQMLEEAVAELKGEEE 1015

Query: 1017 LVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLP 1076
            + ++ WSPQ+ +   VMIPE YV D+NLRL LYRRLG +TD  +I  F  E++DRFGPLP
Sbjct: 1016 IHDTGWSPQISVGTPVMIPEHYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLP 1075

Query: 1077 IEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIR 1136
            IEV HLLK+V++K LCR AN++K+D G KG+++QFR++ F NP AL+ +IA+Q     IR
Sbjct: 1076 IEVQHLLKIVYIKALCRTANVEKLDAGPKGVVVQFRNREFPNPAALVGHIAKQGTLAKIR 1135

Query: 1137 PDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
            PDQ++ F   L T ++R   A  ++T L  +  
Sbjct: 1136 PDQSIFFQRELATPDKRLSGAAMVMTQLATLAK 1168