BLAST/PSIBLAST alignment of GI: 254780947 and GI: 241204639 at iteration 1
>gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1166
>gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1166
Score = 1307 bits (3383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/1175 (54%), Positives = 846/1175 (72%), Gaps = 25/1175 (2%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D ++++ + +T+ V G E +LAE+AR G + Y+ SD + +L+++L+
Sbjct: 1 MIPGFDAKKLA-AIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLS 59
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ PAWDCLPYDRVSPS RRL+ + L++ IVL T +A++
Sbjct: 60 FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQ 119
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
+ I+ S + +Q+ M + +LE NGF+RV V +VGEYAVRGGILDV+ P
Sbjct: 120 KVAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPG 179
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
+ PVRLDFFG+T++S+R FD ++QRTI ++ ++N +SEV LT ISRFR+NYL+ F
Sbjct: 180 SEEPVRLDFFGDTLESIRSFDPASQRTIGQVRALDLNPMSEVTLTPDTISRFRKNYLSAF 239
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G TT++D LY+A+S+GRRYPGMEHWLP FY+ ++T+F YLS F I+ D V+E A +RS+
Sbjct: 240 GATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSK 299
Query: 301 LIQDYYEARL---QYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKL--VQMTAFNQ 355
L+ DYY+ARL Q S Q + YKP+ P +LYL+ + F ++T L ++++ FN+
Sbjct: 300 LVFDYYDARLNSGQPSKGMTQGTPYKPVTPGQLYLDSKLF---VKTLDALGAIRISPFNE 356
Query: 356 QETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGR------FDKFLSHVAQQAQKGI 409
E RVV+++A G+ W ++ N E GG FD + H+A + G
Sbjct: 357 HEGEARRVVNVDARQGQRW---------ARSNAEGGGDAERINIFDVVVKHIADRRAAGA 407
Query: 410 KTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHM 469
K +++A ++G+L+ L+ ++ HG +K+K I L ++ SL + E AA +L + GFE +
Sbjct: 408 KVLVTAWTEGSLERLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDL 467
Query: 470 ILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSG 529
+++ E D+LG ++ RR R+K A + + ++EG+I+VHAEHGIGRF+ L +IE +G
Sbjct: 468 VVIGEQDILGDRMVRRSKRRKRA-ADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAG 526
Query: 530 TFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDL 589
H CLEL YAD AKLF+PVENIDL+SRY E T LDKLGG AW+ RKA LKKRL D+
Sbjct: 527 APHACLELQYADEAKLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDM 586
Query: 590 AQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDR 649
A L+ IAA+R P L + LY +F RFP+ ETEDQE AI+AV DL +GR MDR
Sbjct: 587 ADALIRIAAERLTRHAPMLTTPEGLYDEFAARFPYDETEDQENAIEAVRSDLGAGRPMDR 646
Query: 650 LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASIS 709
L+CGDVGFGKTE+ALRAAF+A MNG QVAV+ PTTLL RQHF+ FS+RF+G VRI S
Sbjct: 647 LVCGDVGFGKTEVALRAAFVAAMNGAQVAVVVPTTLLSRQHFKTFSDRFRGLPVRIQQAS 706
Query: 710 RFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKE 769
R V KE AL KK + EG+ DIV+GTHALL I FANLGL++IDEEQHFGVKHKE LKE
Sbjct: 707 RLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKE 766
Query: 770 THTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMR 829
+ VHVLTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMR
Sbjct: 767 LKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMR 826
Query: 830 EYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDV 889
E+YRGGQSFYVCPRL+DLE + FLQS++PELK+A+AHGQM LED MNAFYEG+YDV
Sbjct: 827 EHYRGGQSFYVCPRLADLEDVHAFLQSDLPELKVAVAHGQMPAGELEDIMNAFYEGRYDV 886
Query: 890 LLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTA 949
LLST+IVESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LTA
Sbjct: 887 LLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTA 946
Query: 950 AAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVA 1009
A++RL++LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA
Sbjct: 947 TAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVA 1006
Query: 1010 SIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMV 1069
+KG ++ ++ WSPQ+ + +VMIPE YV D++LR++LYRRLG IT+ +I F EM+
Sbjct: 1007 EVKGVDEIHDTGWSPQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMI 1066
Query: 1070 DRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQ 1129
DRFGP+PIEV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP L+ YI +Q
Sbjct: 1067 DRFGPMPIEVQHLLKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQ 1126
Query: 1130 KGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHL 1164
IRPD +L LPT +R A I+T L
Sbjct: 1127 GTMAKIRPDHSLFLTRDLPTPEKRLQGAAVIMTQL 1161