BLAST/PSIBLAST alignment of GI: 254780947 and GI: 241204639 at iteration 1
>gi|241204639|ref|YP_002975735.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1166
>gi|240858529|gb|ACS56196.1| transcription-repair coupling factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1166
 Score = 1307 bits (3383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1175 (54%), Positives = 846/1175 (72%), Gaps = 25/1175 (2%)

Query: 1    MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
            MI G D ++++    + +T+  V  G E  +LAE+AR G  + Y+ SD   + +L+++L+
Sbjct: 1    MIPGFDAKKLA-AIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLS 59

Query: 61   LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
             V PDI V+  PAWDCLPYDRVSPS     RRL+ +  L++        IVL T +A++ 
Sbjct: 60   FVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQ 119

Query: 121  RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
            +      I+    S +  +Q+ M  +  +LE NGF+RV  V +VGEYAVRGGILDV+ P 
Sbjct: 120  KVAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPG 179

Query: 181  KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
             + PVRLDFFG+T++S+R FD ++QRTI ++   ++N +SEV LT   ISRFR+NYL+ F
Sbjct: 180  SEEPVRLDFFGDTLESIRSFDPASQRTIGQVRALDLNPMSEVTLTPDTISRFRKNYLSAF 239

Query: 241  GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
            G TT++D LY+A+S+GRRYPGMEHWLP FY+ ++T+F YLS F I+ D  V+E A +RS+
Sbjct: 240  GATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSK 299

Query: 301  LIQDYYEARL---QYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKL--VQMTAFNQ 355
            L+ DYY+ARL   Q S    Q + YKP+ P +LYL+ + F   ++T   L  ++++ FN+
Sbjct: 300  LVFDYYDARLNSGQPSKGMTQGTPYKPVTPGQLYLDSKLF---VKTLDALGAIRISPFNE 356

Query: 356  QETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGR------FDKFLSHVAQQAQKGI 409
             E    RVV+++A  G+ W         ++ N E GG       FD  + H+A +   G 
Sbjct: 357  HEGEARRVVNVDARQGQRW---------ARSNAEGGGDAERINIFDVVVKHIADRRAAGA 407

Query: 410  KTIISASSQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHM 469
            K +++A ++G+L+ L+ ++  HG +K+K I  L ++ SL + E AA +L +  GFE   +
Sbjct: 408  KVLVTAWTEGSLERLLQVLNEHGLEKVKPIEALKDVGSLARGEAAAAVLSLEAGFEAGDL 467

Query: 470  ILVTETDLLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSG 529
            +++ E D+LG ++ RR  R+K   A    + + ++EG+I+VHAEHGIGRF+ L +IE +G
Sbjct: 468  VVIGEQDILGDRMVRRSKRRKRA-ADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAG 526

Query: 530  TFHDCLELHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDL 589
              H CLEL YAD AKLF+PVENIDL+SRY  E T   LDKLGG AW+ RKA LKKRL D+
Sbjct: 527  APHACLELQYADEAKLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDM 586

Query: 590  AQKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDR 649
            A  L+ IAA+R     P L   + LY +F  RFP+ ETEDQE AI+AV  DL +GR MDR
Sbjct: 587  ADALIRIAAERLTRHAPMLTTPEGLYDEFAARFPYDETEDQENAIEAVRSDLGAGRPMDR 646

Query: 650  LICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASIS 709
            L+CGDVGFGKTE+ALRAAF+A MNG QVAV+ PTTLL RQHF+ FS+RF+G  VRI   S
Sbjct: 647  LVCGDVGFGKTEVALRAAFVAAMNGAQVAVVVPTTLLSRQHFKTFSDRFRGLPVRIQQAS 706

Query: 710  RFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKE 769
            R V  KE AL KK + EG+ DIV+GTHALL   I FANLGL++IDEEQHFGVKHKE LKE
Sbjct: 707  RLVGAKELALTKKEVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKE 766

Query: 770  THTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMR 829
              + VHVLTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMR
Sbjct: 767  LKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMR 826

Query: 830  EYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDV 889
            E+YRGGQSFYVCPRL+DLE  + FLQS++PELK+A+AHGQM    LED MNAFYEG+YDV
Sbjct: 827  EHYRGGQSFYVCPRLADLEDVHAFLQSDLPELKVAVAHGQMPAGELEDIMNAFYEGRYDV 886

Query: 890  LLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTA 949
            LLST+IVESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LTA
Sbjct: 887  LLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTA 946

Query: 950  AAQKRLRILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVA 1009
             A++RL++LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA
Sbjct: 947  TAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVA 1006

Query: 1010 SIKGQKDLVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMV 1069
             +KG  ++ ++ WSPQ+ +  +VMIPE YV D++LR++LYRRLG IT+  +I  F  EM+
Sbjct: 1007 EVKGVDEIHDTGWSPQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMI 1066

Query: 1070 DRFGPLPIEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQ 1129
            DRFGP+PIEV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP  L+ YI +Q
Sbjct: 1067 DRFGPMPIEVQHLLKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQ 1126

Query: 1130 KGKIIIRPDQNLVFDCLLPTINQRFFEAKRIITHL 1164
                 IRPD +L     LPT  +R   A  I+T L
Sbjct: 1127 GTMAKIRPDHSLFLTRDLPTPEKRLQGAAVIMTQL 1161