BLAST/PSIBLAST alignment of GI: 254780947 and GI: 307308795 at iteration 1
>gi|307308795|ref|ZP_07588491.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C] Length = 1169
>gi|307317268|ref|ZP_07596709.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83] Length = 1169
>gi|306897356|gb|EFN28101.1| transcription-repair coupling factor [Sinorhizobium meliloti AK83] Length = 1169
>gi|306900801|gb|EFN31412.1| transcription-repair coupling factor [Sinorhizobium meliloti BL225C] Length = 1169
Score = 1318 bits (3411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1173 (54%), Positives = 837/1173 (71%), Gaps = 10/1173 (0%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MI G D +I ++IT+ PV G E +LAE+AR G + YI SD + + +L+++L
Sbjct: 1 MIPGFDPRKILAA-TREITIGPVPTGAEALVLAELARAGAPVAYILSDGQKVADLEQVLG 59
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
V PDI V+ P WDCLPYDRVSPS RRL+ +S L++ IVL T++A +
Sbjct: 60 FVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQ 119
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
R I+ + + +QI M + +LE NGF+RV V ++GE+AVRGGILDVY P
Sbjct: 120 RISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPG 179
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
P+RLDFFG+T++++R FD ++QRTI ++ ++N +SEV LT + IS FR+ YL+ F
Sbjct: 180 SGEPLRLDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLF 239
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G T++D LY A+S+GRRY GMEHWLP FY +ET+F YL F I+TD L +E A +RS+
Sbjct: 240 GAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSK 299
Query: 301 LIQDYYEARLQYSSDKK----QYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQ 356
L+ DYY+ARL +S K Q + YKP+ P+ LYL + F + + V+++ F +
Sbjct: 300 LVLDYYDARLASASPGKSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNA-VRLSPFTEH 358
Query: 357 ETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISAS 416
E +VV++ A G W A E+ ++ FD+ + H+A++ KG K I+S
Sbjct: 359 EGEARQVVNIEARQGLRWAKPAG---EADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGW 415
Query: 417 SQGALQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETD 476
++G+L L+ ++ HG I+ + L++I SL E A+ +L + GFET ++++ E D
Sbjct: 416 TEGSLDRLLQVLAEHGLANIRPVKALSDIGSLKPGEAASAVLSLEAGFETGDLVVIGEQD 475
Query: 477 LLGKKIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLE 536
+LG ++ RR R+K A + + ++EG+ +VHAEHGIGRFV L +IE +G HDCLE
Sbjct: 476 ILGDRLVRRSKRRKR-GADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLE 534
Query: 537 LHYADNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDI 596
L YAD+AKLF+PVENI+L+SRY +E T LDKLGG AW+ RKA LKKRL D+A L+ I
Sbjct: 535 LVYADDAKLFLPVENIELLSRYGSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRI 594
Query: 597 AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVG 656
AA+R P L +Y +F RFP+ ETEDQ +IDAV DL GR MDRL+CGDVG
Sbjct: 595 AAERHTRHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVG 654
Query: 657 FGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKE 716
FGKTE+ALRAAFIA MNG+QVAV+ PTTLL RQHF+ FS+RF+G +RI SR V +K+
Sbjct: 655 FGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKD 714
Query: 717 AALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHV 776
AL KK + EG+ DIV+GTHALL I FANLGL+IIDEEQHFGVKHKE LKE T VHV
Sbjct: 715 LALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHV 774
Query: 777 LTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQ 836
LTLSATPIPRTLQLA+TGVRELSLI+ PP++R+A RT IS FD LV+RETLMRE+YRGGQ
Sbjct: 775 LTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQ 834
Query: 837 SFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896
SFYVCPR+SDL + + FL+S+VPELK+A+AHGQM LED MNAFYEG+YDVLLST+IV
Sbjct: 835 SFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIV 894
Query: 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLR 956
ESGLD+P ANT+IV RADMFGLAQLYQLRGRVGRSK+ +FALF LP N+ LT A++RL+
Sbjct: 895 ESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLK 954
Query: 957 ILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKD 1016
+LQSL+TLGAGFQLAS+DLDIRG GNLLGEEQSGHI+E+GFELYQ+MLEE VA +KG+++
Sbjct: 955 VLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEE 1014
Query: 1017 LVESDWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLP 1076
+ ++ WSPQ+ + VMIPE YV D+NLRL LYRRLG +TD +I F E++DRFGPLP
Sbjct: 1015 IHDTGWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLP 1074
Query: 1077 IEVIHLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIR 1136
EV HLLK+V++K LCR AN++K+D G KG+++QFR+K F NP AL+ YIA+Q IR
Sbjct: 1075 TEVQHLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIR 1134
Query: 1137 PDQNLVFDCLLPTINQRFFEAKRIITHLINMTN 1169
PDQ++ F L T +R A ++T L +
Sbjct: 1135 PDQSIFFQRELATPEKRLSGAAMVMTQLAALAK 1167