BLAST/PSIBLAST alignment of GI: 254780947 and GI: 315122360 at iteration 1
>gi|315122360|ref|YP_004062849.1| transcription-repair coupling factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1185
>gi|313495762|gb|ADR52361.1| transcription-repair coupling factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1185
Score = 1974 bits (5115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1186 (80%), Positives = 1068/1186 (90%), Gaps = 2/1186 (0%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MIFG I +I+EK CKKITLS V GTE F+LAEIAR GLSLVYI SDER L+N+KK L
Sbjct: 1 MIFGDYINKINEKPCKKITLSQVFPGTEPFVLAEIARSGLSLVYIGSDERALVNIKKTLA 60
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
+VPDI VIIFPAWDCLPYDR+S SP VVT RL+C S+L+S N SK+T I+LTTVSAVMC
Sbjct: 61 FIVPDIDVIIFPAWDCLPYDRISASPRVVTDRLACFSHLISCNPSKKTSIILTTVSAVMC 120
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
RSVN MSIKD K SIQSKDQI MAKVIEKLE NGFQRVN VYKVGEYAVRGGILDVY P+
Sbjct: 121 RSVNFMSIKDCKFSIQSKDQISMAKVIEKLEKNGFQRVNTVYKVGEYAVRGGILDVYGPS 180
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
+KYPVRLDFFG+TI+SLRLFD ++QRTIREIS F INTLSEV+LTS+NIS FR+NYL NF
Sbjct: 181 EKYPVRLDFFGDTIESLRLFDYASQRTIREISTFTINTLSEVVLTSENISLFRKNYLLNF 240
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
G TQ+D LYV +SQG RYPGMEHWLPFFYQ METIF YL++FCI+TD VK+TA KRSQ
Sbjct: 241 GAATQKDLLYVTVSQGNRYPGMEHWLPFFYQKMETIFSYLADFCIVTDSAVKDTAHKRSQ 300
Query: 301 LIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAH 360
LIQDYYEAR Q+SSDKK YS+YKPI PEKLYL YQQF+A++++++KL+QMT F+QQET+H
Sbjct: 301 LIQDYYEARCQHSSDKKNYSIYKPILPEKLYLTYQQFEAMLESSNKLIQMTPFSQQETSH 360
Query: 361 NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGA 420
+ VV LN PGKSWVPSAVQKIESQ+NWES RFD+FLS+VAQQ QKG K I+ASS+GA
Sbjct: 361 SCVVCLNVRPGKSWVPSAVQKIESQENWESMNRFDRFLSYVAQQFQKGKKAFIAASSKGA 420
Query: 421 LQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGK 480
LQHLIHL+ES G KIKKI+ EI+SL KEEIAA +LPI+QGFET +MILVTE DLLGK
Sbjct: 421 LQHLIHLMESDGLNKIKKIDCFNEIHSLAKEEIAAAVLPIDQGFETGNMILVTEKDLLGK 480
Query: 481 KIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYA 540
+I RR VRK ++ A SFF+SSNIEEG+IIVHAEHGIGRF+RL SIEVSGT HDCLELHYA
Sbjct: 481 RIIRRTVRKSSL-ANSFFESSNIEEGSIIVHAEHGIGRFIRLSSIEVSGTSHDCLELHYA 539
Query: 541 DNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR 600
DNAKLFVPVENIDLIS+YSTE T+ LDKLGGS+W++RK+NLKKRLEDLAQKLVDIAAKR
Sbjct: 540 DNAKLFVPVENIDLISQYSTENETIMLDKLGGSSWQSRKSNLKKRLEDLAQKLVDIAAKR 599
Query: 601 AIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT 660
IH+VP L VSQDLYSQF+K+FPHVETEDQEKA+DAVIQD +SG LMDRLICGDVGFGKT
Sbjct: 600 LIHNVPALTVSQDLYSQFVKKFPHVETEDQEKAVDAVIQDFTSGHLMDRLICGDVGFGKT 659
Query: 661 EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH 720
EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQ F VRI S+SRFV+ KE ALH
Sbjct: 660 EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQDFPVRIVSVSRFVKPKEVALH 719
Query: 721 KKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLS 780
KK+I EGQVDIVIGTHALL+PKITF+NLGLII+DEEQHFGVKHKEALKETHTGVHVLTLS
Sbjct: 720 KKAIAEGQVDIVIGTHALLDPKITFSNLGLIIVDEEQHFGVKHKEALKETHTGVHVLTLS 779
Query: 781 ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYV 840
ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPL++RETLMREYYRGGQSFYV
Sbjct: 780 ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLLIRETLMREYYRGGQSFYV 839
Query: 841 CPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL 900
CPRL DL+KCY FLQSEVPELK+AMAHGQMSPKNLE+ MN FYE +YD+LLSTSIVESGL
Sbjct: 840 CPRLLDLDKCYDFLQSEVPELKVAMAHGQMSPKNLEETMNGFYERKYDILLSTSIVESGL 899
Query: 901 DLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQS 960
DLP ANT+I+QRADMFGLAQLYQLRGRVGRSKI+SFALFLLPEN+PLT++AQKRLRILQS
Sbjct: 900 DLPNANTIIIQRADMFGLAQLYQLRGRVGRSKISSFALFLLPENKPLTSSAQKRLRILQS 959
Query: 961 LNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVES 1020
LNTLGAGFQLAS+DLDIRGTGNLLGEEQSGHI+E+GFELYQKML ETVASIKG+++LV+S
Sbjct: 960 LNTLGAGFQLASHDLDIRGTGNLLGEEQSGHIKEVGFELYQKMLGETVASIKGKRELVDS 1019
Query: 1021 DWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVI 1080
DWSPQ++IEASVMIP+SYVSD+NLRLSLYRRLGNITDH DI+ FKEEMVDRFG LPIEV+
Sbjct: 1020 DWSPQIMIEASVMIPDSYVSDVNLRLSLYRRLGNITDHTDINRFKEEMVDRFGSLPIEVV 1079
Query: 1081 HLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQN 1140
HLLKV+FLKLLCRIANI+KMDIG KGII+QFR+K F NPE LLQYI QQKGKIIIRPDQ+
Sbjct: 1080 HLLKVLFLKLLCRIANIEKMDIGPKGIIVQFRNKKFHNPEKLLQYIMQQKGKIIIRPDQS 1139
Query: 1141 LVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGD-LSLKVK 1185
L FDCLLPTIN+RF EAK I++ LI + + +IQ D D SLKVK
Sbjct: 1140 LFFDCLLPTINKRFIEAKHILSQLIKLIDVDIQKCDKNDSASLKVK 1185