RPSBLAST alignment for GI: 254780947 and conserved domain: pfam02559
>gnl|CDD|145606 pfam02559, CarD_TRCF, CarD-like/TRCF domain. CarD is a Myxococcus xanthus protein required for the activation of light- and starvation-inducible genes. This family includes the presumed N-terminal domain. CarD interacts with the zinc-binding protein CarG, to form a complex that regulates multiple processes in Myxococcus xanthus. This family also includes a domain to the N-terminal side of the DEAD helicase of TRCF proteins. TRCF displaces RNA polymerase stalled at a lesion, binds to the damage recognition protein UvrA, and increases the template strand repair rate during transcription. This domain is involved in binding to the stalled RNA polymerase. Length = 98
Score = 108 bits (272), Expect = 1e-23
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 502 NIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRY-ST 560
++ G +VH +HG+GRF + +IEV G + L YAD KL+VPV+ +DLI RY +
Sbjct: 1 MLKVGDYVVHPDHGVGRFEGIETIEVGGEKREYYVLEYADGDKLYVPVDQLDLIGRYIGS 60
Query: 561 EITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAA 598
E LDKLGG WK RK +K D+A +L+ + A
Sbjct: 61 EDEVPVLDKLGGGTWKKRKRKIKSGDIDIAAELLRLLA 98