RPSBLAST alignment for GI: 254780947 and conserved domain: cd00079
>gnl|CDD|28960 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process. Length = 131
Score = 77.7 bits (191), Expect = 2e-14
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 822 VVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNA 881
+ E L +GG+ CP L++ L+ P +K+A HG S + E+ +
Sbjct: 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKD 73
Query: 882 FYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFL 940
F EG+ VL++T ++ G+DLP + +I + + Q GR GR+ A+ L
Sbjct: 74 FREGEIVVLVATDVIARGIDLPNVSVVINYDLP-WSPSSYLQRIGRAGRAGQKGTAILL 131