RPSBLAST alignment for GI: 254780947 and conserved domain: COG1197
>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]. Length = 1139
Score = 1159 bits (3000), Expect = 0.0
Identities = 467/1155 (40%), Positives = 692/1155 (59%), Gaps = 37/1155 (3%)
Query: 16 KKITLSPVIDGTEGFILAEIAR-LGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAW 74
+ L + G + ++A +A ++ + +D + L + L PD V++ P W
Sbjct: 10 DPLLLGGLSGGAKALLIAALAEEKPNPVLLVTADLQEADRLAEDLRFF-PDQPVLLLPDW 68
Query: 75 DCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLS 134
+ LPYDR SPS +V+ RL + L IV+ V+A++ + +++ L+
Sbjct: 69 ETLPYDRFSPSQDIVSSRLEALRRLAQGKKG----IVVVPVNALLQKLPPPDFLEENSLT 124
Query: 135 IQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTI 194
++ +++D+ + +L G++RV+ V + GE+AVRGGILD++ P + P R++FFG+ I
Sbjct: 125 LKVGEELDLDDLEARLVRAGYERVDMVMEPGEFAVRGGILDIFPPGSEEPYRIEFFGDEI 184
Query: 195 DSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAIS 254
+S+R FD TQR++ E+ E+ SE +L + I FR+ YL F +D LY A+S
Sbjct: 185 ESIRSFDPETQRSLEEVEEIELLPASEFILDEEAIEAFRKQYLETFEPKR-DDALYEALS 243
Query: 255 QGRRYPGMEHWLPFFYQSMETIFPYLSE-FCIITDPLVKETARKRSQLIQDYYEARLQYS 313
GRR+ G+E++LP FY+ + T+F YL + I+ D V E A + + + D+YEARL
Sbjct: 244 SGRRFAGLEYFLPLFYEDLATLFDYLPKNTLIVVDERVLEAAEEFEKEVADFYEARLSDG 303
Query: 314 SDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKS 373
Y P+ PE LYL+ ++ L++ + + + + E + +++L+ P +
Sbjct: 304 E-------YPPLPPEALYLSAEELFELLKPVPR-ISLFPEHLPELSAEEIINLDPLPDLA 355
Query: 374 WVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF 433
+ + D + + G K II A S+G + L+ L+ H
Sbjct: 356 FFGQHKEP------------LDALRKEIERFR-GGYKVIILAESEGRRERLLELLAEHDI 402
Query: 434 KKIKKINTLTEINSLLKEEIAAVILPINQGFETKHM--ILVTETDLLGKKIARRVVRKKN 491
K + ++ K E+ + P+ GF ++TE++LLG ++ RR RK+
Sbjct: 403 PPQK----VDRLDEAKKGEVYIAVGPLESGFILPDEKLAVITESELLGSRVKRRRRRKRR 458
Query: 492 VHAQSFFDS-SNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVE 550
+ + ++ G +VH +HGIGRF+ L ++EV G D LEL YA KL+VPVE
Sbjct: 459 KKNATRIKDLAELKPGDYVVHIDHGIGRFLGLETLEVGGIERDYLELEYAGEDKLYVPVE 518
Query: 551 NIDLISRY-STEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLM 609
+ LISRY L KLGG AWK KA +K++ D+A +L+ + AKR
Sbjct: 519 QLHLISRYVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFP 578
Query: 610 VSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFI 669
+ +F FP+ ET DQ KAI+ V +D+ SG+ MDRLICGDVGFGKTE+A+RAAF
Sbjct: 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFK 638
Query: 670 AVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQV 729
AVM+G QVAV+ PTTLL +QH+ F ERF GF VRI +SRF KE K + EG+V
Sbjct: 639 AVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKV 698
Query: 730 DIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQ 789
DIVIGTH LL+ + F +LGL+IIDEEQ FGVKHKE LKE V VLTLSATPIPRTL
Sbjct: 699 DIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLN 758
Query: 790 LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEK 849
++++G+R+LS+I+ PP +R+ +T +S +D L++RE ++RE RGGQ FYV R+ +EK
Sbjct: 759 MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEK 818
Query: 850 CYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI 909
L+ VPE +IA+AHGQM + LE+ M FY G+YDVL+ T+I+E+G+D+P ANT+I
Sbjct: 819 KAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878
Query: 910 VQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQ 969
++RAD FGLAQLYQLRGRVGRS ++A FL P + LT A+KRL + S LGAGF+
Sbjct: 879 IERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFK 938
Query: 970 LASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIE 1029
LA +DL+IRG GNLLGEEQSGHI +GF+LY +MLEE +A++KG +++E + ++ +
Sbjct: 939 LAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEVEIDLP 998
Query: 1030 ASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLK 1089
IPE Y+ D NLRL LY+RL N ++ KEE++DRFGPLP EV +LL + LK
Sbjct: 999 VPAFIPEDYIPDDNLRLELYKRLANAESEEELEEIKEELIDRFGPLPDEVKNLLDIAELK 1058
Query: 1090 LLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFDCLLPT 1149
LL R I+K+D G G++I+F NP+ L++ + +Q K ++ D L+F L
Sbjct: 1059 LLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIKLLQKQPLKAKLKGDTKLLFIKDLIE 1118
Query: 1150 INQRFFEAKRIITHL 1164
+R +++ L
Sbjct: 1119 PEERLDAVAKLLKAL 1133