RPSBLAST alignment for GI: 254780947 and conserved domain: COG1197

>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]. Length = 1139
 Score = 1159 bits (3000), Expect = 0.0
 Identities = 467/1155 (40%), Positives = 692/1155 (59%), Gaps = 37/1155 (3%)

Query: 16   KKITLSPVIDGTEGFILAEIAR-LGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAW 74
              + L  +  G +  ++A +A      ++ + +D +    L + L    PD  V++ P W
Sbjct: 10   DPLLLGGLSGGAKALLIAALAEEKPNPVLLVTADLQEADRLAEDLRFF-PDQPVLLLPDW 68

Query: 75   DCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLS 134
            + LPYDR SPS  +V+ RL  +  L          IV+  V+A++ +      +++  L+
Sbjct: 69   ETLPYDRFSPSQDIVSSRLEALRRLAQGKKG----IVVVPVNALLQKLPPPDFLEENSLT 124

Query: 135  IQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTI 194
            ++  +++D+  +  +L   G++RV+ V + GE+AVRGGILD++ P  + P R++FFG+ I
Sbjct: 125  LKVGEELDLDDLEARLVRAGYERVDMVMEPGEFAVRGGILDIFPPGSEEPYRIEFFGDEI 184

Query: 195  DSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAIS 254
            +S+R FD  TQR++ E+   E+   SE +L  + I  FR+ YL  F     +D LY A+S
Sbjct: 185  ESIRSFDPETQRSLEEVEEIELLPASEFILDEEAIEAFRKQYLETFEPKR-DDALYEALS 243

Query: 255  QGRRYPGMEHWLPFFYQSMETIFPYLSE-FCIITDPLVKETARKRSQLIQDYYEARLQYS 313
             GRR+ G+E++LP FY+ + T+F YL +   I+ D  V E A +  + + D+YEARL   
Sbjct: 244  SGRRFAGLEYFLPLFYEDLATLFDYLPKNTLIVVDERVLEAAEEFEKEVADFYEARLSDG 303

Query: 314  SDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKS 373
                    Y P+ PE LYL+ ++   L++   + + +   +  E +   +++L+  P  +
Sbjct: 304  E-------YPPLPPEALYLSAEELFELLKPVPR-ISLFPEHLPELSAEEIINLDPLPDLA 355

Query: 374  WVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF 433
            +     +              D     + +    G K II A S+G  + L+ L+  H  
Sbjct: 356  FFGQHKEP------------LDALRKEIERFR-GGYKVIILAESEGRRERLLELLAEHDI 402

Query: 434  KKIKKINTLTEINSLLKEEIAAVILPINQGFETKHM--ILVTETDLLGKKIARRVVRKKN 491
               K    +  ++   K E+   + P+  GF        ++TE++LLG ++ RR  RK+ 
Sbjct: 403  PPQK----VDRLDEAKKGEVYIAVGPLESGFILPDEKLAVITESELLGSRVKRRRRRKRR 458

Query: 492  VHAQSFFDS-SNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVE 550
                +     + ++ G  +VH +HGIGRF+ L ++EV G   D LEL YA   KL+VPVE
Sbjct: 459  KKNATRIKDLAELKPGDYVVHIDHGIGRFLGLETLEVGGIERDYLELEYAGEDKLYVPVE 518

Query: 551  NIDLISRY-STEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLM 609
             + LISRY         L KLGG AWK  KA  +K++ D+A +L+ + AKR         
Sbjct: 519  QLHLISRYVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFP 578

Query: 610  VSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFI 669
               +   +F   FP+ ET DQ KAI+ V +D+ SG+ MDRLICGDVGFGKTE+A+RAAF 
Sbjct: 579  PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFK 638

Query: 670  AVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQV 729
            AVM+G QVAV+ PTTLL +QH+  F ERF GF VRI  +SRF   KE     K + EG+V
Sbjct: 639  AVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKV 698

Query: 730  DIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQ 789
            DIVIGTH LL+  + F +LGL+IIDEEQ FGVKHKE LKE    V VLTLSATPIPRTL 
Sbjct: 699  DIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLN 758

Query: 790  LAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEK 849
            ++++G+R+LS+I+ PP +R+  +T +S +D L++RE ++RE  RGGQ FYV  R+  +EK
Sbjct: 759  MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEK 818

Query: 850  CYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMI 909
                L+  VPE +IA+AHGQM  + LE+ M  FY G+YDVL+ T+I+E+G+D+P ANT+I
Sbjct: 819  KAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878

Query: 910  VQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQ 969
            ++RAD FGLAQLYQLRGRVGRS   ++A FL P  + LT  A+KRL  + S   LGAGF+
Sbjct: 879  IERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFK 938

Query: 970  LASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQVLIE 1029
            LA +DL+IRG GNLLGEEQSGHI  +GF+LY +MLEE +A++KG  +++E +   ++ + 
Sbjct: 939  LAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLEEAIAALKGSLEVLEEEKEVEIDLP 998

Query: 1030 ASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLK 1089
                IPE Y+ D NLRL LY+RL N     ++   KEE++DRFGPLP EV +LL +  LK
Sbjct: 999  VPAFIPEDYIPDDNLRLELYKRLANAESEEELEEIKEELIDRFGPLPDEVKNLLDIAELK 1058

Query: 1090 LLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFDCLLPT 1149
            LL R   I+K+D G  G++I+F      NP+ L++ + +Q  K  ++ D  L+F   L  
Sbjct: 1059 LLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIKLLQKQPLKAKLKGDTKLLFIKDLIE 1118

Query: 1150 INQRFFEAKRIITHL 1164
              +R     +++  L
Sbjct: 1119 PEERLDAVAKLLKAL 1133