RPSBLAST alignment for GI: 254780947 and conserved domain: COG1198
>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]. Length = 730
Score = 76.1 bits (187), Expect = 5e-14
Identities = 96/440 (21%), Positives = 149/440 (33%), Gaps = 107/440 (24%)
Query: 591 QKLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRL 650
+ L I PPL+V+ S ++Q+ A++A++ L L
Sbjct: 167 KGLEKKGLIEIIELEPPLVVAPPDPS---LSEWLALNQEQQAAVEAILSSLGGFAPF--L 221
Query: 651 ICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQG-FSVRIASIS 709
+ G G GKTE+ L A + G QV V+ P L Q RF+ F ++A +
Sbjct: 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQ----LLARFKARFGAKVAVLH 277
Query: 710 RFVQTKEAALHKKSITEGQVDIVIGTH-ALLNPKITFANLGLIIIDEEQHFGVKHKEA-- 766
+ E + G+ +VIGT AL P F NLGLII+DEE K ++
Sbjct: 278 SGLSPGERYRVWRRARRGEARVVIGTRSALFLP---FKNLGLIIVDEEHDSSYKQEDGPR 334
Query: 767 --------LKETHTGVHVLTLSATPIPRTLQLAITGVRELSLIS-------MPPINRIAC 811
L+ V+ SATP + A +G +L ++ +P + I
Sbjct: 335 YHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDM 394
Query: 812 RTSISIFDPLV-------VRETLMREY-------YRGGQSFYVCPRLSDLEKC------Y 851
R + +R+TL R RG +C + +C
Sbjct: 395 RKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPL 454
Query: 852 TF-------------------------------------------LQSEVPELKIA-MAH 867
T L+ P +I +
Sbjct: 455 TLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDS 514
Query: 868 GQMSPKN-LEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMF---------- 916
K LED ++ F G+ D+L+ T ++ G D P + V AD
Sbjct: 515 DTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574
Query: 917 -GLAQLYQLRGRVGRSKIAS 935
L Q+ GR GR+
Sbjct: 575 RTFQLLMQVAGRAGRAGKPG 594