RPSBLAST alignment for GI: 254780947 and conserved domain: KOG0344
>gnl|CDD|35565 KOG0344, KOG0344, KOG0344, ATP-dependent RNA helicase [RNA processing and modification]. Length = 593
Score = 76.6 bits (188), Expect = 4e-14
Identities = 63/377 (16%), Positives = 117/377 (31%), Gaps = 81/377 (21%)
Query: 616 SQFIKRFPHVETEDQEKA-IDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG 674
S +F Q+ A + D+ M I G +G GK I L V++
Sbjct: 239 SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR--IVGLLGLGKLNIDLSKVEWLVVDE 296
Query: 675 LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIG 734
+ P V Q ++S +R+A S + + I +++G
Sbjct: 297 -ADLLFEPEFF-VEQLADIYSACQSP-DIRVALFS-ATISVYVEEWAELIKSDLKRVIVG 352
Query: 735 THALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITG 794
N +D+E F K L LA+
Sbjct: 353 LR----------NSANETVDQELVFCGSEKGKL----------------------LAL-- 378
Query: 795 VRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFL 854
R+L P I ++ R Q F
Sbjct: 379 -RQLVASGFKPPVLIFVQS-----------------KERAKQLFEELEIY---------- 410
Query: 855 QSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRAD 914
+ + + HG+ S K ++ M F G+ VL+ T ++ G+D N +I
Sbjct: 411 ----DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFP 466
Query: 915 MFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYD 974
L+ ++++ GR GR+ + A+ + R+R + + +G ++
Sbjct: 467 QSDLSYIHRI-GRTGRAGRSGKAITFYTD------QDMPRIRSIAEVMEQ-SGCEVPEKI 518
Query: 975 LDIRGTGNLLGEEQSGH 991
+ I+ L ++
Sbjct: 519 MGIKKLSRLKKKKLLKA 535