RPSBLAST alignment for GI: 254780947 and conserved domain: KOG0344

>gnl|CDD|35565 KOG0344, KOG0344, KOG0344, ATP-dependent RNA helicase [RNA processing and modification]. Length = 593
 Score = 76.6 bits (188), Expect = 4e-14
 Identities = 63/377 (16%), Positives = 117/377 (31%), Gaps = 81/377 (21%)

Query: 616 SQFIKRFPHVETEDQEKA-IDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNG 674
           S    +F       Q+ A +     D+     M   I G +G GK  I L      V++ 
Sbjct: 239 SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR--IVGLLGLGKLNIDLSKVEWLVVDE 296

Query: 675 LQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIG 734
               +  P    V Q   ++S       +R+A  S    +       + I      +++G
Sbjct: 297 -ADLLFEPEFF-VEQLADIYSACQSP-DIRVALFS-ATISVYVEEWAELIKSDLKRVIVG 352

Query: 735 THALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITG 794
                       N     +D+E  F    K  L                      LA+  
Sbjct: 353 LR----------NSANETVDQELVFCGSEKGKL----------------------LAL-- 378

Query: 795 VRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFL 854
            R+L      P   I  ++                   R  Q F                
Sbjct: 379 -RQLVASGFKPPVLIFVQS-----------------KERAKQLFEELEIY---------- 410

Query: 855 QSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRAD 914
                 + + + HG+ S K  ++ M  F  G+  VL+ T ++  G+D    N +I     
Sbjct: 411 ----DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFP 466

Query: 915 MFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYD 974
              L+ ++++ GR GR+  +  A+    +          R+R +  +    +G ++    
Sbjct: 467 QSDLSYIHRI-GRTGRAGRSGKAITFYTD------QDMPRIRSIAEVMEQ-SGCEVPEKI 518

Query: 975 LDIRGTGNLLGEEQSGH 991
           + I+    L  ++    
Sbjct: 519 MGIKKLSRLKKKKLLKA 535