BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780947|ref|YP_003065360.1| transcription-repair coupling
factor [Candidatus Liberibacter asiaticus str. psy62]
(1187 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 2447 bits (6341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1187/1187 (100%), Positives = 1187/1187 (100%)
Query: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT
Sbjct: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT 60
Query: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC
Sbjct: 61 LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC 120
Query: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT
Sbjct: 121 RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT 180
Query: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF
Sbjct: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240
Query: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ
Sbjct: 241 GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ 300
Query: 301 LIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAH 360
LIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAH
Sbjct: 301 LIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAH 360
Query: 361 NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGA 420
NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGA
Sbjct: 361 NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGA 420
Query: 421 LQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGK 480
LQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGK
Sbjct: 421 LQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGK 480
Query: 481 KIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYA 540
KIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYA
Sbjct: 481 KIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYA 540
Query: 541 DNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR 600
DNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR
Sbjct: 541 DNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR 600
Query: 601 AIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT 660
AIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT
Sbjct: 601 AIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT 660
Query: 661 EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH 720
EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH
Sbjct: 661 EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH 720
Query: 721 KKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLS 780
KKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLS
Sbjct: 721 KKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLS 780
Query: 781 ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYV 840
ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYV
Sbjct: 781 ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYV 840
Query: 841 CPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL 900
CPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL
Sbjct: 841 CPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL 900
Query: 901 DLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQS 960
DLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQS
Sbjct: 901 DLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQS 960
Query: 961 LNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVES 1020
LNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVES
Sbjct: 961 LNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVES 1020
Query: 1021 DWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVI 1080
DWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVI
Sbjct: 1021 DWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVI 1080
Query: 1081 HLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQN 1140
HLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQN
Sbjct: 1081 HLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQN 1140
Query: 1141 LVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGDLSLKVKSL 1187
LVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGDLSLKVKSL
Sbjct: 1141 LVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGDLSLKVKSL 1187
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 212 bits (540), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/395 (34%), Positives = 214/395 (54%), Gaps = 19/395 (4%)
Query: 607 PLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRA 666
P+ V + + ++ P T+ QE AI ++QD+S M R++ GDVG GKT +AL A
Sbjct: 254 PINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIA 313
Query: 667 AFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITE 726
AV G Q ++AP +L +QH+ + Q + + I+ + + I
Sbjct: 314 MAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAH 373
Query: 727 GQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPR 786
GQ I+IGTHAL I + L L+I+DE+ FGV+ + L + T HVL ++ATPIPR
Sbjct: 374 GQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPR 433
Query: 787 TLQLAITGVRELSLISMPPINRIACRTSISIFDPL-VVRETLMREYYRGGQSFYVCPRLS 845
TL L G ++S I+ P R +T I + + V E L G +++++CP++
Sbjct: 434 TLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIE 493
Query: 846 DLEKCYTFLQSEVPELK---------IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIV 896
EK + +S V IA+ HG+MS + E M++F G +L++T+++
Sbjct: 494 --EKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551
Query: 897 ESGLDLPKANTMIVQRADMFGLAQLYQLRGRVGRS-KIASFALFLLPENRPLTAAAQKRL 955
E G+D+ A+ +I++ A+ FGLAQL+QLRGRVGR +I+S L P PL+ + RL
Sbjct: 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP---PLSKNSYTRL 608
Query: 956 RILQSLNTLGAGFQLASYDLDIRGTGNLLGEEQSG 990
+L++ GF +A DL R G +LG +QSG
Sbjct: 609 SVLKNTED---GFLIAEEDLKQRKEGEILGIKQSG 640
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 20/234 (8%)
Query: 540 ADNAKLFVPVENIDLISRYSTEITTVTLDKL-GGSAWKTRKANLKKRLEDLAQKLVDI-- 596
++ K+ ++ + R +T LDK+ G W+ R R ++ ++D
Sbjct: 115 SETEKMEEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDL---IRASQVSSHVIDGLK 171
Query: 597 ---AAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICG 653
K+ + P++ S +LY + ++Q+ ++ V+ + G + LI G
Sbjct: 172 AQGVIKQIFEVISPVVDSPNLYFSL-----PILDKNQQDVVEQVVPLCTKGFAVS-LISG 225
Query: 654 DVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQ 713
G GKTE+ L + G QV ++ P L F +R F V+ A +
Sbjct: 226 VTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLS 282
Query: 714 TKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEAL 767
T + + G + +++G + L + F LGLI+IDEE K +E +
Sbjct: 283 TSMREKIWRQVARGAISVIVGVRSALF--LPFKKLGLIVIDEEHDISYKQEEGI 334
Score = 26.9 bits (58), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 23/115 (20%)
Query: 719 LHKKSITEGQVDIVIGTHALLN----PKITF-----ANLGLIIID---EEQHFGVKHKEA 766
L +I +G++DI+IGT + P+++ +LGL D E+ F + +
Sbjct: 527 LQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVT 586
Query: 767 LKETHTGVHVLTL--SATPIPRTLQLAITG---------VRELSLISMPPINRIA 810
+ G+ L L + P +Q ++G +R +++PP R+A
Sbjct: 587 GRAGRFGLKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLA 641
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 35.8 bits (81), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/328 (20%), Positives = 133/328 (40%), Gaps = 40/328 (12%)
Query: 645 RLMDRLICGDVGFGKT---EIALRAAFIAVMNGLQVA------VIAPTTLLVRQHFRLFS 695
R D L+ G GKT +AL + +A + A IAPT L Q R
Sbjct: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
Query: 696 ERFQGFSVRIASISRFVQTKEAALHK-KSITEGQVDIVIGTHALL-----NPKITFANLG 749
+ V +A V ++H+ + + IV+GT L + ++L
Sbjct: 96 WLYAKTGVVVA-----VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
Query: 750 LIIIDE-EQHFGVKHKEA----LKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP 804
+++DE ++ + ++ L + +L SAT P LA ++ +++
Sbjct: 151 AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
Query: 805 PINR-------IACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857
NR A ++S D +V ++R Y+ + C + + + L
Sbjct: 211 SENRQHSDIDYRAVLVALSDRDNAIV--NILR-YHGAKNAIVFCSTRASVSRFTKVLAEH 267
Query: 858 VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG 917
+ ++ G++S + + + +G+ V ++T + G+DLP + +V A++
Sbjct: 268 L--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--DLELVIHAELSS 323
Query: 918 LAQ-LYQLRGRVGRSKIASFALFLLPEN 944
+ L GR GR+ ++F++P+N
Sbjct: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQN 351
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 32.0 bits (71), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 885 GQYDVLLSTSIVESGLDLPKANTMIVQRADMFGL----AQLYQLRGRVGRSKIASFALF 939
G++DVL+ +++ GLD+P+ + + AD G L Q GR R+ + L+
Sbjct: 631 GKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILY 689
Score = 25.4 bits (54), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 592 KLVDIAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETE 628
K+++ + AI P +++ LYS+F FPH E
Sbjct: 187 KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVE 223
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 27.7 bits (60), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 863 IAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQLY 922
+ HG + ++ ++ F EG +++++ + GLD+P + D+ A+ Y
Sbjct: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF--NFDVPNRAENY 329
Query: 923 QLR-GRVGRS 931
R GR GR+
Sbjct: 330 IHRIGRTGRA 339
>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 26.2 bits (56), Expect = 2.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHV 401
+ F G + S+++K+ES ++ + GRFD S V
Sbjct: 148 MGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSV 183
>gi|254781209|ref|YP_003065622.1| hypothetical protein CLIBASIA_05580 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 175
Score = 25.8 bits (55), Expect = 4.6, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 844 LSDLEKCYTFLQSEVPELKIAMAHGQMSPK-NLEDKMNAFYEGQYDVLLSTSIVESGLDL 902
LSD + Y E LK+A G++ P ++D+M ++ +G+ + +L+ ++ G+++
Sbjct: 114 LSDCDPLY----QEAFALKLA---GELCPPLIMDDQMRSYLKGESERVLAVAMDMDGVEI 166
Query: 903 PK 904
P+
Sbjct: 167 PE 168
>gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 352
Score = 25.8 bits (55), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 199 LFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRE 234
+F S +QR + + I+ + EV+ TSQ +RF E
Sbjct: 97 VFTSPSQRNHSRWTRYLISRMDEVITTSQKSARFIE 132
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 25.4 bits (54), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 596 IAAKRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLIC--- 652
+A + HS +V S +K FP + D + +++A++ L G L + +C
Sbjct: 658 MARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQGSVEAIVDSL--GALKNSEVCLSI 715
Query: 653 --GDVG-FGKTEIALRAAFIAVMNGLQVAVIAPTTLLV 687
VG +T+++L A AV+ G V + +L
Sbjct: 716 VHSSVGAINETDVSLAKASGAVIFGFNVRASSQARVLA 753
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 25.0 bits (53), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 924 LRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIR 978
L + R++ AS AL+ L + L + + R++QSLN + Y L R
Sbjct: 71 LESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWYRLKAR 125
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,942
Number of Sequences: 1233
Number of extensions: 29981
Number of successful extensions: 110
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 20
length of query: 1187
length of database: 328,796
effective HSP length: 84
effective length of query: 1103
effective length of database: 225,224
effective search space: 248422072
effective search space used: 248422072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)