HHsearch alignment for GI: 254780948 and conserved domain: COG1381
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].
Probab=100.00 E-value=7.2e-42 Score=275.23 Aligned_cols=230 Identities=27% Similarity=0.427 Sum_probs=194.5
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCH
Q ss_conf 5000169983035880244754227212869999966767--55320003443147998215777654310122101422
Q gi|254780948|r 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLAQNLGEFRFEVLESHCA 79 (240)
Q Consensus 2 ~~~d~giVL~~~~~~E~~~Iv~~~T~~~G~~~~i~rG~~~--~k~~~~lq~~~~~~~~~~~k~~~~l~~~~~e~~~~~~~ 79 (240)
T Consensus 5 ~~~~~giVL~~r~~~E~d~IVtvfT~~~G~~~~~akgark~~s~l~~~lqpf~~~~~~~~~~~~~l~~l~~~e~v~~~~~ 84 (251)
T COG1381 5 EIKDEGIVLRSRPYGETDKIVTVFTEEHGRVRAVAKGARKRKSKLRAVLQPFTPVDFQWYGRGRELKTLTQAEPVGSYPG 84 (251)
T ss_pred HHCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCHHH
T ss_conf 11261699980457876578999647886578773456556687400105653699999836877773665677010466
Q ss_pred HHCCCCHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCC
Q ss_conf 2104405899999999999-962135667678999999999-61223430137999999999983767661221023555
Q gi|254780948|r 80 KLLSSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLN-CHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVT 157 (240)
Q Consensus 80 ~~~~~~~~l~~~~~~~~l~-~~l~e~e~~~~lf~~l~~~L~-~l~~~~~~~~~~~~fEl~LL~~lGf~p~L~~C~~cg~~ 157 (240)
T Consensus 85 -i~~d~~~l~~~~y~~ell~~l~~e~~~~p~Lf~~~~~~L~~l~~~~~~~~~~l~~fel~lL~~~G~~~~l~~Ca~cg~~ 163 (251)
T COG1381 85 -IISDIFALYSASYVAELLDRLLPEEDPNPELFELYLETLEYLLSDGNDPELLLRRFELKLLGELGIGPNLTSCARCGTP 163 (251)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC
T ss_conf -6422999999999999999985355888579999999999986178777999999999999983986162767564983
Q ss_pred CCCEEEEECCCCHHHHCC----CCCCCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 662244301210011102----4753200001234552256--7899899999998999999856566289999987999
Q gi|254780948|r 158 QDLLWVSPKSGGAVCRSV----GLPYAEKMLVLPSFLWKEE--QTIDADSLKSAFQLTDYFLNKYALQHNIIHCHLLREN 231 (240)
Q Consensus 158 ~~l~~~s~~~g~av~~~~----~~~~~~kll~lp~fL~~~~--~~~~~~~i~~~l~lt~~fL~k~~l~~~~~~~P~sR~~ 231 (240)
T Consensus 164 ~~~~~~s~~~~~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lks~~~~~~~ 243 (251)
T COG1381 164 VDPVYFSPKSGGFLCSKCARAAPKPEKDLLLLFGRFLLDLLNRLALKAETKQAAKRITRQLLKEYLGEKPLKSRKLLRQL 243 (251)
T ss_pred CCCCEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 78741664268610132013567752267775088899864201048566999999999999998334565428899998
Q ss_pred H
Q ss_conf 9
Q gi|254780948|r 232 F 232 (240)
Q Consensus 232 f 232 (240)
T Consensus 244 ~ 244 (251)
T COG1381 244 F 244 (251)
T ss_pred H
T ss_conf 7