HHSEARCH alignment of GI: 254780948 and SCOP domain: d1u5ka1

Alignment
>d1u5ka1 b.40.4.13 (A:2-80) Recombinational repair protein RecO, N-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.60  E-value=2e-16  Score=117.02  Aligned_cols=75  Identities=17%  Similarity=0.174  Sum_probs=66.8

Q ss_pred             CCEEEEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCH-HHHHCC
Q ss_conf             9500016998303588024475422721286999996676755320003443147998215777654310-122101
Q gi|254780948|r    1 MYWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFR-FEVLES   76 (240)
Q Consensus         1 M~~~d~giVL~~~~~~E~~~Iv~~~T~~~G~~~~i~rG~~~~k~~~~lq~~~~~~~~~~~k~~~~l~~~~-~e~~~~   76 (240)
                      +.++++||||+++||||+|+||++||++ |+++++||||+++|+++.++|++++.++|..+..+.++.++ +|++..
T Consensus         3 r~~~~~giVL~~~~~~Esd~iv~~~T~~-Gki~~iakG~rr~~~~~~~~~~~~~~~~~~~~~g~~L~~L~qael~~a   78 (79)
T d1u5ka1           3 RTANRSGIVIRRRVTPAGDIIVTLLTPQ-GKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGA   78 (79)
T ss_dssp             SEEEEEEEEEEEEECTTSCEEEEEEETT-EEEEEEETTCTTSTTTTTSCTTCEEEEEEECCCC-CCEEEEEEEEEEC
T ss_pred             CEECCEEEEEEEEECCCCCEEEEEEECC-CCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf             5603028999835638754999998078-858999975656899864900057889999849997760987799403


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RecO N-terminal domain-like
domain: Recombinational repair protein RecO, N-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]