HHSEARCH alignment of GI: 254780948 and SCOP domain: d1u5ka2

Alignment
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.63  E-value=1.5e-15  Score=111.78  Aligned_cols=134  Identities=12%  Similarity=0.096  Sum_probs=96.8

Q ss_pred             CCCHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCE
Q ss_conf             4405899999999999-962135667678999999999612234301379999999999837676612210235556622
Q gi|254780948|r   83 SSSLFLYGLQSIVPLF-RFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGVTQDLL  161 (240)
Q Consensus        83 ~~~~~l~~~~~~~~l~-~~l~e~e~~~~lf~~l~~~L~~l~~~~~~~~~~~~fEl~LL~~lGf~p~L~~C~~cg~~~~l~  161 (240)
                      .|..++++++++++++ ++++|++|++.+|+++..+|..++...+.....+.||+++|+.+||+|+++.|+.||..++ .
T Consensus         4 ~D~~r~~~A~~l~El~~~~~~e~~~~~~lf~ll~~~L~~L~~~~~~~~~~~~f~l~ll~~~G~~P~l~~C~~cg~~~~-~   82 (157)
T d1u5ka2           4 AEPERYAFAHLMAEFADALFQEGEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAPDP-E   82 (157)
T ss_dssp             GSHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHTTSSSCCCCSBCTTTCCBSC-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC-C
T ss_conf             029999999999999999823689719999999999999880576159999999999998388877466703899787-7


Q ss_pred             EEEECCCCHHHHCCCCCCCCH--HHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             443012100111024753200--0012345522------5678998999999989999998565
Q gi|254780948|r  162 WVSPKSGGAVCRSVGLPYAEK--MLVLPSFLWK------EEQTIDADSLKSAFQLTDYFLNKYA  217 (240)
Q Consensus       162 ~~s~~~g~av~~~~~~~~~~k--ll~lp~fL~~------~~~~~~~~~i~~~l~lt~~fL~k~~  217 (240)
                      ++++..||++|..|+......  ....-..+..      .....+..+..+..++...|+.-|+
T Consensus        83 ~f~~~~Gg~~C~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~y~~~Hl  146 (157)
T d1u5ka2          83 HPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQV  146 (157)
T ss_dssp             EECTTTSSEECTTTCSSCCCCHHHHHHHHHTTTSCHHHHHHSCCCGGGHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             5101679257887787677760388999987115766665102899999999999999999998


SCOP domain information

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]