RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str. psy62] (240 letters) >1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244) Length = 162 Score = 63.8 bits (155), Expect = 2e-11 Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 9/128 (7%) Query: 97 LFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQIELMLLKNIGFGLDLTKCVVTGV 156 E E + +D+ L + + + LL G +C G Sbjct: 17 ADALFQEGEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCG- 75 Query: 157 TQDLLWVSPKSGGAVCRSVGLP--------YAEKMLVLPSFLWKEEQTIDADSLKSAFQL 208 D P G +C + V + EQ + + + ++ Sbjct: 76 APDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRA 135 Query: 209 TDYFLNKY 216 + F+ Sbjct: 136 LEKFVTVQ 143 >1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:1-82) Length = 82 Score = 63.6 bits (155), Expect = 2e-11 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 3 WQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRL 62 I++ R +II+ ++T Q G+ R G + L + V V Sbjct: 6 ANRSGIVIRRRVTPAGDIIVTLLTPQ-GKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGP 64 Query: 63 AQNLGEFR-FEVLESH 77 +L + + + Sbjct: 65 HNDLASVKQAVLEGAL 80 >3jyw_C 60S ribosomal protein L3; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_C (C:40-78,C:206-362) Length = 196 Score = 29.4 bits (66), Expect = 0.48 Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%) Query: 24 VMTRQYGRHLGFVRNGQSHRMQPILQAGNLVRVNWRSRLAQNLGEFR 70 V R +G + + R + A + V W A G Sbjct: 59 VTHR-WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHS 104 >3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* (A:) Length = 63 Score = 27.6 bits (61), Expect = 1.4 Identities = 14/45 (31%), Positives = 18/45 (40%) Query: 149 TKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKE 193 T C T LW +G VC + GL Y + P + KE Sbjct: 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKE 52 >1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} (A:) Length = 189 Score = 26.9 bits (59), Expect = 2.4 Identities = 8/72 (11%), Positives = 21/72 (29%), Gaps = 1/72 (1%) Query: 2 YWQDDAIILGVRSYGEKNIILEVMTRQYGRHLGFVRNGQSHRMQPILQ-AGNLVRVNWRS 60 W+ D++ + + K E Q+ + + + + A L+ + Sbjct: 71 PWEQDSVEIFIDENNHKTGYYEDDDAQFRVNYMNEQTFGTGGSPARFKTAVKLIEGGYIV 130 Query: 61 RLAQNLGEFRFE 72 A + Sbjct: 131 EAAIKWKTIKPT 142 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76) Length = 76 Score = 26.6 bits (58), Expect = 2.8 Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 11/36 (30%) Query: 75 ESHCAKLLSSSLFLYGLQSIVPLFRFLPEREPCLEL 110 E K L +SL LY + P L + Sbjct: 18 EKQALKKLQASLKLYA-----------DDSAPALAI 42 >2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (C:1-29,C:104-211) Length = 137 Score = 25.9 bits (57), Expect = 5.3 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 24 VMTRQYGRHLGFVRNGQS--HRMQPILQAGNLVRVNWRSRLAQNLGEFR 70 VM R +G +GQ+ HR + G++ RV +++ +G Sbjct: 49 VMKR-WGFKGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIY 96 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.143 0.439 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,832,694 Number of extensions: 78335 Number of successful extensions: 244 Number of sequences better than 10.0: 1 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 9 Length of query: 240 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 154 Effective length of database: 2,048,819 Effective search space: 315518126 Effective search space used: 315518126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 53 (24.4 bits)