HHsearch alignment for GI: 254780949 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=96.63 E-value=0.046 Score=33.91 Aligned_cols=195 Identities=14% Similarity=0.124 Sum_probs=113.8
Q ss_pred CCEEEEEEECCCCCCCCHHHH----HHHHHHHHHHHCCCEEEE--EEECHHHCCCCCCCCCCCCCCCCHHHHH-------
Q ss_conf 981899984378762024348----999999999985984999--9826011144889886210246889999-------
Q gi|254780949|r 34 GVVTAYIGYDLTASSLHAGHL----TQLMLLFWLQKTGHKPIS--LMGGGTSIIGDPSFRDESRRMMRSQEIQ------- 100 (418)
Q Consensus 34 ~~~~~y~G~DpT~~slH~G~l----~~~~~l~~~q~~Gh~~i~--liG~~T~~IGDPsgk~~~R~~l~~~~i~------- 100 (418)
T Consensus 19 ~~~~v~tGisPSG~-~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~l------Rkvp~~lp~~~~~e~Ylg~Pl 91 (521)
T COG1384 19 DEYVVATGISPSGL-IHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPL------RKVPRNLPDPEELEQYLGMPL 91 (521)
T ss_pred CCEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------CCCCCCCCCHHHHHHHCCCCC
T ss_conf 86898347689887-32142898989999999999748865799981487510------127999998689998709964
Q ss_pred -----------HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -----------999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 101 -----------ENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 101 -----------~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
T Consensus 92 t~IPdP~G~~~Sya~hf~~~f~~~l~~--~Gi~~E~~s~se~Yk~G~~~~~i~~ale--------~rdeI~~il~~~~~~ 161 (521)
T COG1384 92 TEIPDPFGCCDSYAEHFLRPFEEFLDE--FGIEVEFVSATELYKSGLYDEAIRIALE--------RRDEIMEILNEYRGR 161 (521)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEHHHHHHCCCHHHHHHHHHH--------HHHHHHHHHHHHCCC
T ss_conf 348997665335999999999999986--4986499876775644558999999986--------579999999985187
Q ss_pred CHHHHHHHHH-------------------------------------------------HHHHHHHHHHHCCCCEECCCC
Q ss_conf 1578898989-------------------------------------------------899999998542970201541
Q gi|254780949|r 170 SFLEFNYMIL-------------------------------------------------QAYDFVELAKNYDCRLQMGGS 200 (418)
Q Consensus 170 s~~EF~Y~ll-------------------------------------------------QayD~~~L~~~~~~~iqiGGs 200 (418)
T Consensus 162 ~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WRvdWp~RW~~l----gVd~EPfGK 237 (521)
T COG1384 162 ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWRVDWPMRWAAL----GVDFEPFGK 237 (521)
T ss_pred CCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHCC----CCCCCCCCC
T ss_conf 6667723022256555870306889963784499986688610462233676443576750010000----831035785
Q ss_pred HHH---HHHHHHHHHHHHCCC-CCEEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf 258---899888999973167-9717983110236871022354310123334
Q gi|254780949|r 201 DQW---GNIICGIDLGERLKT-PKLFALTSPLLTTASGTKMGKTLSGAIWLNK 249 (418)
Q Consensus 201 DQw---gNi~~G~eLir~~~~-~~~~glT~PLLt~~dG~KmgKS~~naIwLd~ 249 (418)
T Consensus 238 DH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~d 290 (521)
T COG1384 238 DHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSD 290 (521)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEECHHH
T ss_conf 31345676378999999864999997775588985488665568785785999