HHsearch alignment for GI: 254780949 and conserved domain: COG1384

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=96.63  E-value=0.046  Score=33.91  Aligned_cols=195  Identities=14%  Similarity=0.124  Sum_probs=113.8

Q ss_pred             CCEEEEEEECCCCCCCCHHHH----HHHHHHHHHHHCCCEEEE--EEECHHHCCCCCCCCCCCCCCCCHHHHH-------
Q ss_conf             981899984378762024348----999999999985984999--9826011144889886210246889999-------
Q gi|254780949|r   34 GVVTAYIGYDLTASSLHAGHL----TQLMLLFWLQKTGHKPIS--LMGGGTSIIGDPSFRDESRRMMRSQEIQ-------  100 (418)
Q Consensus        34 ~~~~~y~G~DpT~~slH~G~l----~~~~~l~~~q~~Gh~~i~--liG~~T~~IGDPsgk~~~R~~l~~~~i~-------  100 (418)
T Consensus        19 ~~~~v~tGisPSG~-~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~l------Rkvp~~lp~~~~~e~Ylg~Pl   91 (521)
T COG1384          19 DEYVVATGISPSGL-IHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPL------RKVPRNLPDPEELEQYLGMPL   91 (521)
T ss_pred             CCEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC------CCCCCCCCCHHHHHHHCCCCC
T ss_conf             86898347689887-32142898989999999999748865799981487510------127999998689998709964


Q ss_pred             -----------HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             -----------999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r  101 -----------ENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL  169 (418)
Q Consensus       101 -----------~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i  169 (418)
T Consensus        92 t~IPdP~G~~~Sya~hf~~~f~~~l~~--~Gi~~E~~s~se~Yk~G~~~~~i~~ale--------~rdeI~~il~~~~~~  161 (521)
T COG1384          92 TEIPDPFGCCDSYAEHFLRPFEEFLDE--FGIEVEFVSATELYKSGLYDEAIRIALE--------RRDEIMEILNEYRGR  161 (521)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEHHHHHHCCCHHHHHHHHHH--------HHHHHHHHHHHHCCC
T ss_conf             348997665335999999999999986--4986499876775644558999999986--------579999999985187


Q ss_pred             CHHHHHHHHH-------------------------------------------------HHHHHHHHHHHCCCCEECCCC
Q ss_conf             1578898989-------------------------------------------------899999998542970201541
Q gi|254780949|r  170 SFLEFNYMIL-------------------------------------------------QAYDFVELAKNYDCRLQMGGS  200 (418)
Q Consensus       170 s~~EF~Y~ll-------------------------------------------------QayD~~~L~~~~~~~iqiGGs  200 (418)
T Consensus       162 ~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WRvdWp~RW~~l----gVd~EPfGK  237 (521)
T COG1384         162 ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWRVDWPMRWAAL----GVDFEPFGK  237 (521)
T ss_pred             CCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHCC----CCCCCCCCC
T ss_conf             6667723022256555870306889963784499986688610462233676443576750010000----831035785


Q ss_pred             HHH---HHHHHHHHHHHHCCC-CCEEEEEECEEECCCCHHHHHHHHCCCCCCC
Q ss_conf             258---899888999973167-9717983110236871022354310123334
Q gi|254780949|r  201 DQW---GNIICGIDLGERLKT-PKLFALTSPLLTTASGTKMGKTLSGAIWLNK  249 (418)
Q Consensus       201 DQw---gNi~~G~eLir~~~~-~~~~glT~PLLt~~dG~KmgKS~~naIwLd~  249 (418)
T Consensus       238 DH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~d  290 (521)
T COG1384         238 DHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSD  290 (521)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEECHHH
T ss_conf             31345676378999999864999997775588985488665568785785999