HHsearch alignment for GI: 254780949 and conserved domain: PRK04051

>PRK04051 rps4p 30S ribosomal protein S4; Validated.
Probab=97.22  E-value=0.0012  Score=44.34  Aligned_cols=133  Identities=14%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
Q ss_conf             99799999886207888987997506888567555433321022026889899999973000004679998643102576
Q gi|254780949|r  252 TSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSI  331 (418)
Q Consensus       252 tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~~~~pr~aKk~LA~EiT~lvHGe~~a~~A~~~s~~lF~~~~  331 (418)
T Consensus        12 ~tP~~Pweker~~~E~kl~---~~YGLknKrE~wk~~~~l~k~R~~Ar~Ll~~~------~~~r~~~~~~LL~kL~~~Gl   82 (177)
T PRK04051         12 ETPKHPWIKERIEEERELM---GKYGLRNKKELWKAETILRKYRRQARSLLALT------PEEREKEEEQLLKKLYRYGI   82 (177)
T ss_pred             CCCCCCHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHCCC
T ss_conf             9999952255558899999---99777759999999999999999999973578------27889999999999998597


Q ss_pred             CCCCCC--C-EECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHH
Q ss_conf             422577--1-03077782169988999998499788689999987698798879804800023777
Q gi|254780949|r  332 HSQHMP--T-ISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ  394 (418)
Q Consensus       332 ~~~~lp--~-~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~  394 (418)
T Consensus        83 l~~~~~LddvL~Ltv~~~l~-RRL~~vv~r~~~a~si~~Ar~lI~hgHi~V~~~~v~~Ps~~V~r~  147 (177)
T PRK04051         83 LSENATLDDVLSLTVEDILE-RRLQTIVYRKGLARTPKQARQLIVHGHIAVNGRRVTSPGYLVSRE  147 (177)
T ss_pred             CCCCCCHHHHHHCCHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCEEEEEC
T ss_conf             77888788887366989999-688899988056688999999974782899999953686588655