HHsearch alignment for GI: 254780949 and conserved domain: PRK04051
>PRK04051 rps4p 30S ribosomal protein S4; Validated.
Probab=97.22 E-value=0.0012 Score=44.34 Aligned_cols=133 Identities=14% Similarity=0.258 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
Q ss_conf 99799999886207888987997506888567555433321022026889899999973000004679998643102576
Q gi|254780949|r 252 TSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEINEAKKIIATEITTMVHGREEAEKAATAAMECFDMSI 331 (418)
Q Consensus 252 tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~~~~pr~aKk~LA~EiT~lvHGe~~a~~A~~~s~~lF~~~~ 331 (418)
T Consensus 12 ~tP~~Pweker~~~E~kl~---~~YGLknKrE~wk~~~~l~k~R~~Ar~Ll~~~------~~~r~~~~~~LL~kL~~~Gl 82 (177)
T PRK04051 12 ETPKHPWIKERIEEERELM---GKYGLRNKKELWKAETILRKYRRQARSLLALT------PEEREKEEEQLLKKLYRYGI 82 (177)
T ss_pred CCCCCCHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHCCC
T ss_conf 9999952255558899999---99777759999999999999999999973578------27889999999999998597
Q ss_pred CCCCCC--C-EECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHH
Q ss_conf 422577--1-03077782169988999998499788689999987698798879804800023777
Q gi|254780949|r 332 HSQHMP--T-ISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQ 394 (418)
Q Consensus 332 ~~~~lp--~-~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~ 394 (418)
T Consensus 83 l~~~~~LddvL~Ltv~~~l~-RRL~~vv~r~~~a~si~~Ar~lI~hgHi~V~~~~v~~Ps~~V~r~ 147 (177)
T PRK04051 83 LSENATLDDVLSLTVEDILE-RRLQTIVYRKGLARTPKQARQLIVHGHIAVNGRRVTSPGYLVSRE 147 (177)
T ss_pred CCCCCCHHHHHHCCHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCEEEEEC
T ss_conf 77888788887366989999-688899988056688999999974782899999953686588655