HHsearch alignment for GI: 254780949 and conserved domain: PRK12556
>PRK12556 tryptophanyl-tRNA synthetase; Provisional.
Probab=99.84 E-value=3.1e-19 Score=147.16 Aligned_cols=253 Identities=14% Similarity=0.208 Sum_probs=166.4
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHH-HHHHH-HCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8189998437876202434899999-99999-859849999826011144889886210246889999999999999887
Q gi|254780949|r 35 VVTAYIGYDLTASSLHAGHLTQLML-LFWLQ-KTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSS 112 (418)
Q Consensus 35 ~~~~y~G~DpT~~slH~G~l~~~~~-l~~~q-~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~ 112 (418)
T Consensus 3 k~~i~SGiqPTG~-lHLGNYlGaik~~v~l~~~~~~~~~~~IaDlHalT----------~~~dp~~l~~~~~~---~~a~ 68 (328)
T PRK12556 3 EKIMLTGIKPTGY-PHLGNYIGAIKPALQMSKNNEGKALYFIADYHALN----------AVHDPEQFSSYTKE---VAAT 68 (328)
T ss_pred CCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCC----------CCCCHHHHHHHHHH---HHHH
T ss_conf 9968857798997-50888999999999975479987799985142235----------88999999999999---9999
Q ss_pred HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 653267776402330167523431346888752234478753478888740--------356883157889898989999
Q gi|254780949|r 113 FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRL--------KREQSLSFLEFNYMILQAYDF 184 (418)
Q Consensus 113 ~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl--------~~~~~is~~EF~Y~llQayD~ 184 (418)
T Consensus 69 ~LA~GlDP~-~~~f~QS~V-peh~eL~wi--l~~~~~~g~L~Rm~q~K~k~~~~~~~~~~~~~~i~~GL~~YPvLmAADI 144 (328)
T PRK12556 69 WLSLGLGED-VIFYRQTEV-PEILELAWI--LACLTPKGLMNRAHAYKAKVEQNKEAGLEVDAGVNMGLYTYPILMAADI 144 (328)
T ss_pred HHHCCCCCC-EEEEECCCC-HHHHHHHHH--HHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCHH
T ss_conf 997589987-499987897-399999999--9776838888515323005565454035755565554566507653311
Q ss_pred HHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCC--CEE-------EEEECEEECCCCHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 99985429702015412588998889999731679--717-------983110236871022354310123334579979
Q gi|254780949|r 185 VELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTP--KLF-------ALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPY 255 (418)
Q Consensus 185 ~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~--~~~-------glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy 255 (418)
T Consensus 145 Lly~a~-~VPV---GeDQ~QHlEltRdiA~rFN~~yg~~f~~P~~~i~~~~~~i~gldgkKMSKS~~n~I~L~---D~~d 217 (328)
T PRK12556 145 LLFQAT-HVPV---GKDQIQHIEIARDIATYFNHTFGTTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLF---AEQE 217 (328)
T ss_pred HHCCCC-EECC---CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC---CCHH
T ss_conf 302664-5046---81069999999999999987557556786433376543310899876556878813476---8999
Q ss_pred HHHHHHHHH-CH-------HHHHHHHHHHCCC-CHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999988620-78-------8898799750688-856755543332--102202688989999997300
Q gi|254780949|r 256 NFWQYWRNI-DD-------ADVVSFAKRLTTL-PMSEIDRMAKLQ--GKEINEAKKIIATEITTMVHG 312 (418)
Q Consensus 256 ~fyQf~~n~-~D-------~dV~kyLklfT~l-~l~EI~~l~~~~--~~~pr~aKk~LA~EiT~lvHG 312 (418)
T Consensus 218 ~I~kKI~ka~TDs~~~~~p~~~~NL~~i~~~~s~~~~~~~i~~~y~~g~g~g~~K~~Lae~i~~~L~p 285 (328)
T PRK12556 218 KLRKLIFKIKTDSSLPNEPKELETLFTIYKEFATEDEMQSMREKYETGIGWGDVKKELFRVVDRELAG 285 (328)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999974515899999988508999999986795389999999865998999999999999998589