HHsearch alignment for GI: 254780949 and conserved domain: TIGR03447
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=91.05 E-value=0.094 Score=31.85 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHH----HHHHHHHHHHHCCCCC--EEEEEECEEECCCCHHHHHHHHCCC
Q ss_conf 788989898999999985429702015412588----9988899997316797--1798311023687102235431012
Q gi|254780949|r 172 LEFNYMILQAYDFVELAKNYDCRLQMGGSDQWG----NIICGIDLGERLKTPK--LFALTSPLLTTASGTKMGKTLSGAI 245 (418)
Q Consensus 172 ~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwg----Ni~~G~eLir~~~~~~--~~glT~PLLt~~dG~KmgKS~~naI 245 (418)
T Consensus 228 IECSaMs~~-----~L--G~~~DIHgGG~DL~FPHHENEiAQsea~~--g~~~~a~yWmH~g~-l~~~geKMSKSlGN~~ 297 (411)
T TIGR03447 228 IECSAIATN-----RL--GAGFDIQGGGSDLIFPHHEFSAAHAEAAT--GVRRMARHYVHAGM-IGLDGEKMSKSLGNLV 297 (411)
T ss_pred HHHHHHHHH-----HC--CCCEEEECCCCCCCCCCCHHHHHHHHHHH--CCCHHHHHHHECCE-EEECCEECCCCCCCEE
T ss_conf 999999998-----75--99757878860357888530999999866--88737667653002-3128705566688725
Q ss_pred CCCCCCCCHHHHHHHHHHH-CHHHHHHHHHHHC
Q ss_conf 3334579979999988620-7888987997506
Q gi|254780949|r 246 WLNKEMTSPYNFWQYWRNI-DDADVVSFAKRLT 277 (418)
Q Consensus 246 wLd~~~tSPy~fyQf~~n~-~D~dV~kyLklfT 277 (418)
T Consensus 298 ti~dl-----------~~~g~~p~~iR~~lL~~ 319 (411)
T TIGR03447 298 FVSKL-----------RAAGVDPAAIRLGLLAG 319 (411)
T ss_pred EHHHH-----------HHCCCCHHHHHHHHHCC
T ss_conf 79999-----------86499899999999714