HHsearch alignment for GI: 254780949 and conserved domain: TIGR03447

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=91.05  E-value=0.094  Score=31.85  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHH----HHHHHHHHHHHCCCCC--EEEEEECEEECCCCHHHHHHHHCCC
Q ss_conf             788989898999999985429702015412588----9988899997316797--1798311023687102235431012
Q gi|254780949|r  172 LEFNYMILQAYDFVELAKNYDCRLQMGGSDQWG----NIICGIDLGERLKTPK--LFALTSPLLTTASGTKMGKTLSGAI  245 (418)
Q Consensus       172 ~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwg----Ni~~G~eLir~~~~~~--~~glT~PLLt~~dG~KmgKS~~naI  245 (418)
T Consensus       228 IECSaMs~~-----~L--G~~~DIHgGG~DL~FPHHENEiAQsea~~--g~~~~a~yWmH~g~-l~~~geKMSKSlGN~~  297 (411)
T TIGR03447       228 IECSAIATN-----RL--GAGFDIQGGGSDLIFPHHEFSAAHAEAAT--GVRRMARHYVHAGM-IGLDGEKMSKSLGNLV  297 (411)
T ss_pred             HHHHHHHHH-----HC--CCCEEEECCCCCCCCCCCHHHHHHHHHHH--CCCHHHHHHHECCE-EEECCEECCCCCCCEE
T ss_conf             999999998-----75--99757878860357888530999999866--88737667653002-3128705566688725


Q ss_pred             CCCCCCCCHHHHHHHHHHH-CHHHHHHHHHHHC
Q ss_conf             3334579979999988620-7888987997506
Q gi|254780949|r  246 WLNKEMTSPYNFWQYWRNI-DDADVVSFAKRLT  277 (418)
Q Consensus       246 wLd~~~tSPy~fyQf~~n~-~D~dV~kyLklfT  277 (418)
T Consensus       298 ti~dl-----------~~~g~~p~~iR~~lL~~  319 (411)
T TIGR03447       298 FVSKL-----------RAAGVDPAAIRLGLLAG  319 (411)
T ss_pred             EHHHH-----------HHCCCCHHHHHHHHHCC
T ss_conf             79999-----------86499899999999714