HHsearch alignment for GI: 254780949 and conserved domain: cd00165
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=97.69 E-value=5.1e-05 Score=53.38 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=41.3
Q ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHH
Q ss_conf 8899999849978868999998769879887980480002377771
Q gi|254780949|r 351 GLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 351 ~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~ 396 (418)
T Consensus 2 RLd~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~gd~ 47 (70)
T cd00165 2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDV 47 (70)
T ss_pred CHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCE
T ss_conf 4889998748715899999999819389899995888889899999