HHsearch alignment for GI: 254780949 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=0 Score=525.81 Aligned_cols=266 Identities=45% Similarity=0.710 Sum_probs=252.2
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18999843787620243489999999999859849999826011144889886210246889999999999999887653
Q gi|254780949|r 36 VTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSSFIK 115 (418)
Q Consensus 36 ~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~ 115 (418)
T Consensus 1 lriy~Gi~PTG~~lHLGhyv~~~~~~~~q~~g~~~~~~IaD~hAli~dp~~~~~~r~~~~~e~i~~~~~~~~~~~~~~~~ 80 (268)
T cd00805 1 LKVYVGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLTEEEILENAKYIKKQIKAILK 80 (268)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 93998147999972499999999999998789958999954201405897650222146199999988738999988525
Q ss_pred CCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 26777640233016752343134688875223447875347888874035688315788989898999999985429702
Q gi|254780949|r 116 YGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYDCRL 195 (418)
Q Consensus 116 ~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~~~i 195 (418)
T Consensus 81 ~~-~~~~~~i~~ns~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~r~~-~~~i~~~~f~YPvlQAaDil~~~~~----~ 153 (268)
T cd00805 81 FI-PPEKLIFVNNSDWLLKLYTLDFLR-LGKHFSVNRMLRRDAVKVRLE-EEGISLSEFLYPLLQAYDFVYLDVD----I 153 (268)
T ss_pred CC-CCCCEEEEECCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCHHHHCCC----C
T ss_conf 89-987469997837663502999999-960277889987588876421-5798732355899986018671377----1
Q ss_pred ECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 01541258899888999973167971798311023687102235431012333457997999998862078889879975
Q gi|254780949|r 196 QMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKR 275 (418)
Q Consensus 196 qiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLkl 275 (418)
T Consensus 154 vpvG~DQ~~hiel~Rdia~r~n~~~~~~l~~pll~g~dG~KMSKS~~N~i~-i~l~dsp~~i~~ki~~~~d~~v~~~~~~ 232 (268)
T cd00805 154 QLGGSDQRGNITLGRDLIRRLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIW-DGLLDSPYDFYQKIRNAPDPDVLKFLKL 232 (268)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEEEECEEECCCCCCCCCCCCCCCC-CCCCCCHHHHHHHEEECCCCCHHHHHHH
T ss_conf 460600899999999999982897614553110008998744678999501-3121555888614402886049999999
Q ss_pred HCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH
Q ss_conf 0688856755543332--102202688989999997
Q gi|254780949|r 276 LTTLPMSEIDRMAKLQ--GKEINEAKKIIATEITTM 309 (418)
Q Consensus 276 fT~l~l~EI~~l~~~~--~~~pr~aKk~LA~EiT~l 309 (418)
T Consensus 233 ~t~~~~~~i~el~~~~~~g~~~~~~K~~La~~i~~l 268 (268)
T cd00805 233 LTFLDYEEIEELEKLYKKGPLPRDAKKALAEELTKL 268 (268)
T ss_pred HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 965999999999999975888669999999999629