HHsearch alignment for GI: 254780949 and conserved domain: cd00817

>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.43  E-value=0.00034  Score=47.95  Aligned_cols=72  Identities=25%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             CCCCEECCCCHH---HHH--HHHHHHHHHHCCCCC-EEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             297020154125---889--988899997316797-17983110236871022354310123334579979999988620
Q gi|254780949|r  191 YDCRLQMGGSDQ---WGN--IICGIDLGERLKTPK-LFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNI  264 (418)
Q Consensus       191 ~~~~iqiGGsDQ---wgN--i~~G~eLir~~~~~~-~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~  264 (418)
T Consensus       276 ~p~d~~~~GkDIirfW~~~~~~~~~~l~~---~~P~~~v~~HG~vl~~~G~KMSKS~GNvv~p~-------~----~l~~  341 (363)
T cd00817         276 YPTSLLPTGHDIIFFWVARMIMRGLELTG---KLPFKEVYIHGLVRDEDGRKMSKSLGNVIDPL-------D----VIDG  341 (363)
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCEEECCCCCCCCCCCCCCCCHH-------H----HHHH
T ss_conf             87637876238874699999998766248---98865668786289999887578899866989-------9----9987


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             788898799750
Q gi|254780949|r  265 DDADVVSFAKRL  276 (418)
Q Consensus       265 ~D~dV~kyLklf  276 (418)
T Consensus       342 yg~D~lRy~l~~  353 (363)
T cd00817         342 YGADALRFTLAS  353 (363)
T ss_pred             CCCHHHHHHHHH
T ss_conf             792799999995