HHsearch alignment for GI: 254780949 and conserved domain: cd00817
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.43 E-value=0.00034 Score=47.95 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=49.0
Q ss_pred CCCCEECCCCHH---HHH--HHHHHHHHHHCCCCC-EEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 297020154125---889--988899997316797-17983110236871022354310123334579979999988620
Q gi|254780949|r 191 YDCRLQMGGSDQ---WGN--IICGIDLGERLKTPK-LFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRNI 264 (418)
Q Consensus 191 ~~~~iqiGGsDQ---wgN--i~~G~eLir~~~~~~-~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n~ 264 (418)
T Consensus 276 ~p~d~~~~GkDIirfW~~~~~~~~~~l~~---~~P~~~v~~HG~vl~~~G~KMSKS~GNvv~p~-------~----~l~~ 341 (363)
T cd00817 276 YPTSLLPTGHDIIFFWVARMIMRGLELTG---KLPFKEVYIHGLVRDEDGRKMSKSLGNVIDPL-------D----VIDG 341 (363)
T ss_pred CCCCEEEEEEHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCEEECCCCCCCCCCCCCCCCHH-------H----HHHH
T ss_conf 87637876238874699999998766248---98865668786289999887578899866989-------9----9987
Q ss_pred CHHHHHHHHHHH
Q ss_conf 788898799750
Q gi|254780949|r 265 DDADVVSFAKRL 276 (418)
Q Consensus 265 ~D~dV~kyLklf 276 (418)
T Consensus 342 yg~D~lRy~l~~ 353 (363)
T cd00817 342 YGADALRFTLAS 353 (363)
T ss_pred CCCHHHHHHHHH
T ss_conf 792799999995