HHsearch alignment for GI: 254780949 and conserved domain: smart00363
>smart00363 S4 S4 RNA-binding domain.
Probab=97.78 E-value=2.9e-05 Score=55.05 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHH
Q ss_conf 899999849978868999998769879887980480002377771
Q gi|254780949|r 352 LLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDF 396 (418)
Q Consensus 352 l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~ 396 (418)
T Consensus 3 LD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~ 47 (60)
T smart00363 3 LDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDV 47 (60)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCE
T ss_conf 889999838704799999999849179899994789889899999