HHsearch alignment for GI: 254780949 and conserved domain: smart00363

>smart00363 S4 S4 RNA-binding domain.
Probab=97.78  E-value=2.9e-05  Score=55.05  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=39.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECHHHH
Q ss_conf             899999849978868999998769879887980480002377771
Q gi|254780949|r  352 LLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIKLQDF  396 (418)
Q Consensus       352 l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~~~d~  396 (418)
T Consensus         3 LD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~   47 (60)
T smart00363        3 LDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDV   47 (60)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCE
T ss_conf             889999838704799999999849179899994789889899999