HHsearch results for GI: 254780949 and protein with PDBid: 1irx_A

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=98.41  E-value=1.3e-05  Score=55.94  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHCCCCEECCCCHHHHHH---HHHHHHHH-HCCCCCEEEEEECEE-ECCCCHHHHHHHHCCCCCC
Q ss_conf             99999998542970201541258899---88899997-316797179831102-3687102235431012333
Q gi|254780949|r  181 AYDFVELAKNYDCRLQMGGSDQWGNI---ICGIDLGE-RLKTPKLFALTSPLL-TTASGTKMGKTLSGAIWLN  248 (418)
Q Consensus       181 ayD~~~L~~~~~~~iqiGGsDQwgNi---~~G~eLir-~~~~~~~~glT~PLL-t~~dG~KmgKS~~naIwLd  248 (418)
                      .+|+...+..++++..++|.|--+|.   .++...+. -.+..+..-...|+| .+.+|.|||||.||.+-++
T Consensus       219 ~~~~~~~~~~~~v~~~~~g~dh~~~~~~~~~~~~~~~~~~~~~~p~~~h~~~l~~~~~~~KmSKr~g~~~~~~  291 (523)
T 1irx_A          219 RVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLS  291 (523)
T ss_dssp             HHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHH
T ss_pred             ECCCCHHHCCCCCEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf             3262021127873687571210378406788899998606888865789835761775545666666621499