HHsearch results for GI: 254780949 and protein with PDBid: 2jan_A

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=1059.38  Aligned_cols=413  Identities=35%  Similarity=0.601  Sum_probs=389.1

Q ss_pred             HHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCC
Q ss_conf             36799999996892002299899999851498189998437876202434899999999998598499998260111448
Q gi|254780949|r    4 FKSDFLSILSERGFIHQISNPRELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGD   83 (418)
Q Consensus         4 ~~~~~~~~L~~Rg~i~~~~~~~~l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGD   83 (418)
                      |..|++++|.+||+|+++|++++|+++++++++++|+||||||||||+||+||+|+||+||++||+||+||||+||+|||
T Consensus         1 m~~~~l~eL~~Rg~i~~~t~~~~l~~~~~~~~~~~y~G~DPTa~sLHlGh~v~l~~l~~fq~~Gh~~v~liG~~Ta~IGD   80 (432)
T 2jan_A            1 MSGMILDELSWRGLIAQSTDLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGD   80 (432)
T ss_dssp             ----CHHHHHHHTCCSEESCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCC
T ss_conf             97689999998799444189999999984699679980688997630877999999999998799799997654010579


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89886210246889999999999999887653267776402330167523431346888752234478753478888740
Q gi|254780949|r   84 PSFRDESRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRL  163 (418)
Q Consensus        84 Psgk~~~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl  163 (418)
                      ||||+ ||++++.+++.+|+++|+.|+.+|+++++.+..++||||+|||++|+++||||++|++|||++||+||+|++|+
T Consensus        81 Psg~~-er~~~~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~d~l~~~g~~~~v~~ml~rd~~k~R~  159 (432)
T 2jan_A           81 PRDVG-ERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL  159 (432)
T ss_dssp             CCCTT-TSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT
T ss_pred             CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHCCHHHHHHHHHCCEEHHHHHHHHHHHHHH
T ss_conf             99998-57678899999999999988888831036766459973399874264778999984432000466667898875


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCHHHHHHH-H
Q ss_conf             356883157889898989999999854297020154125889988899997316797179831102368710223543-1
Q gi|254780949|r  164 KREQSLSFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGTKMGKTL-S  242 (418)
Q Consensus       164 ~~~~~is~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~KmgKS~-~  242 (418)
                      ++ +|||||||+||||||||||||+++|||++|||||||||||++||||||+.+++++||||+||||++||+|||||. +
T Consensus       160 ~~-~~is~~EF~YpllQayD~v~L~~~~~~dvqiGGsDQ~gNi~~G~~l~~~~~~~~~~~lT~PLL~~~dG~K~gks~~~  238 (432)
T 2jan_A          160 AG-EGISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG  238 (432)
T ss_dssp             ST-TCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred             CC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             16-88635655367776879999876249627997477899999768899874787526886325227987832341368


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             0123334579979999988620788898799750688856755543332--10220268898999999730000046799
Q gi|254780949|r  243 GAIWLNKEMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ--GKEINEAKKIIATEITTMVHGREEAEKAA  320 (418)
Q Consensus       243 naIwLd~~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~--~~~pr~aKk~LA~EiT~lvHGe~~a~~A~  320 (418)
                      |||||||++||||+|||||||+||++|++||++||++|++||+++++.+  +++||.||++||.|||++|||++++++|+
T Consensus       239 ~~iwld~~~tsP~~~yq~~~n~~D~~v~kyl~l~T~l~~~eI~~l~~~~~~~p~~r~akk~LA~Evt~lvHGeeaa~~A~  318 (432)
T 2jan_A          239 GSLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLVHGEAATAAVE  318 (432)
T ss_dssp             CBCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             74242368888699997740278899999999845788778999999742376403678999999999704889999999


Q ss_pred             HHHHHHCCCCCCCCC--------CCCEECCHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEEC
Q ss_conf             986431025764225--------771030777821699889999984997886899999876987988798048000237
Q gi|254780949|r  321 TAAMECFDMSIHSQH--------MPTISISKDEVSRGMGLLTLIVKAGFATSTNEARRHLKSNAIKINNSIISNEKLQIK  392 (418)
Q Consensus       321 ~~s~~lF~~~~~~~~--------lp~~~i~~~~i~~~~~l~dlL~~~gL~~SksEARRlI~qGgV~IN~~kI~d~~~~i~  392 (418)
                      ++++.+|+++..++.        +|++.+.......+.+++|+|+++|+|+|||||||+|+|||||||+++|+|+++.++
T Consensus       319 ~~~~~lF~~~~~~~~~~~~l~~~~~~~~i~~l~~~~~~~l~dLLv~~gL~~SksEARRLI~qGgV~IN~~kI~d~~~~l~  398 (432)
T 2jan_A          319 HASRALFGRGELARLDEATLAAALRETTVAELKPGSPDGIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQ  398 (432)
T ss_dssp             HHHHHTTTSSCTTSCCHHHHHHHHHHSCEEEECSSSCCSHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCC
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEECCCCCCCCC
T ss_conf             99999856899765644567764557862330467867699999982897789999999991989989998169433137


Q ss_pred             HHHHCCCCEEEEEECCEEEEEEEECC
Q ss_conf             77714797699977785489999719
Q gi|254780949|r  393 LQDFDSTGNIKLSFGKKNHIICHLCG  418 (418)
Q Consensus       393 ~~d~~~~~~liLr~GKK~~~lI~ivg  418 (418)
                      ..+++.+++++||+|||+|++|++||
T Consensus       399 ~~d~~~g~~~iLr~GKK~f~~Vk~ig  424 (432)
T 2jan_A          399 SSDFLHGRWLVLRRGKRSIAGVERIG  424 (432)
T ss_dssp             GGGSBTTTEEEEESSSSCEEEEEEC-
T ss_pred             HHHHCCCCEEEEEECCEEEEEEEEEE
T ss_conf             87813798899997680089999961