HHsearch results for GI: 254780949 and protein with PDBid: 3foc_A
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.4e-30 Score=220.58 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=218.9
Q ss_pred HHHCCCHHHCCCHHH-HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCCCC
Q ss_conf 996892002299899-9998514981899984378762024348999999999985-98499998260111448898862
Q gi|254780949|r 12 LSERGFIHQISNPRE-LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT-GHKPISLMGGGTSIIGDPSFRDE 89 (418)
Q Consensus 12 L~~Rg~i~~~~~~~~-l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~-Gh~~i~liG~~T~~IGDPsgk~~ 89 (418)
|..||+|-.--+-+. |+..-++++..+|.||+||+.++||||+++++.+++||+. |..+++.|+|.++.+.++
T Consensus 67 ~~rRgi~f~hrd~d~il~~~~~g~pf~v~tG~~PsSG~~HLGh~~~~~~~~~lQd~~~~~~~i~iaD~ea~~~~~----- 141 (451)
T 3foc_A 67 MLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNR----- 141 (451)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCT-----
T ss_pred HHCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCC-----
T ss_conf 011556530368999999997599849997988998975399999999999998757997899972478840488-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r 90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL 169 (418)
Q Consensus 90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i 169 (418)
-++.++++.++..+ +..++..+-++.+..|..+++|..-..+.+++..+++..++++|.+.-.| ....
T Consensus 142 ---~~~~e~~~~~~~e~---~~~~iA~G~Dp~kt~if~qS~~~~v~~~~~l~~~l~~~~t~~el~~~~gf------~~~~ 209 (451)
T 3foc_A 142 ---SLSYAEVDSYTREN---IKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF------SNDA 209 (451)
T ss_dssp ---TCCHHHHHHHHHHH---HHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC------CSSS
T ss_pred ---CCCHHHHHHHHHHH---HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHCCC------CCCC
T ss_conf ---99999999999999---99999957790233999916003137899999999570564467662056------8777
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------CCCC
Q ss_conf 157889898989999999854-------------------------------------------------------2970
Q gi|254780949|r 170 SFLEFNYMILQAYDFVELAKN-------------------------------------------------------YDCR 194 (418)
Q Consensus 170 s~~EF~Y~llQayD~~~L~~~-------------------------------------------------------~~~~ 194 (418)
++..|.||++||.|.++-... ...+
T Consensus 210 nig~~~yP~~Qaadil~~~~~~~~~~~~~vpv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (451)
T 3foc_A 210 NVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMC 289 (451)
T ss_dssp CHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEE
T ss_pred CCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 56411450765423432023345766434442125567888876654311332100102467766665300122101122
Q ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCCH--HHHHHHHC-CCCCCCCCCCHHHHHHHHHHH-------
Q ss_conf 20154125889988899997316797179831102368710--22354310-123334579979999988620-------
Q gi|254780949|r 195 LQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASGT--KMGKTLSG-AIWLNKEMTSPYNFWQYWRNI------- 264 (418)
Q Consensus 195 iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG~--KmgKS~~n-aIwLd~~~tSPy~fyQf~~n~------- 264 (418)
+..+|.||.-++...||+.+|++..+...++.|.+++.+|. |||||..| +|+|+ .||-+.+.+.++.
T Consensus 290 lvp~G~DQ~~~~~ltRdia~r~~~~~p~~~~~~~lpgL~G~~~KMSkS~pnS~I~L~---D~pe~I~kKI~k~A~tgg~~ 366 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT---DTPAQIKNKINRYAFSGGRD 366 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT---CCHHHHHHHHHHHSCCCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC---CCHHHHHHHHHHHHCCCCCC
T ss_conf 013645789999999999998389988025037766778987765678998633405---89899999886440389988
Q ss_pred -----------CH-HHHHHHHHHHCCCCHHHHHHHHHHH--H-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----------78-8898799750688856755543332--1-022026889899999973000
Q gi|254780949|r 265 -----------DD-ADVVSFAKRLTTLPMSEIDRMAKLQ--G-KEINEAKKIIATEITTMVHGR 313 (418)
Q Consensus 265 -----------~D-~dV~kyLklfT~l~l~EI~~l~~~~--~-~~pr~aKk~LA~EiT~lvHGe 313 (418)
+| ..+..|+..|.. +-++++++.+.- + -.+.+.|+.||+.+++++..-
T Consensus 367 t~ee~r~~gg~p~~~~~~~~l~~f~~-dD~~leei~~~y~~G~l~~ge~K~~lae~l~~~L~~~ 429 (451)
T 3foc_A 367 TEEEHRAFGADLSVDVSVRYLEVFMK-DDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEH 429 (451)
T ss_dssp SHHHHHTTCCCTTTCHHHHHHHHHCC-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 65300104999663069999999849-9358999999986389898999999999999998999