HHsearch results for GI: 254780949 and protein with PDBid: 3jxe_A

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00  E-value=5.1e-37  Score=263.02  Aligned_cols=280  Identities=12%  Similarity=0.104  Sum_probs=209.8

Q ss_pred             HHHCCCHHHCCCHHHHHH-HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCCCC
Q ss_conf             996892002299899999-8514981899984378762024348999999999985-98499998260111448898862
Q gi|254780949|r   12 LSERGFIHQISNPRELDI-LCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKT-GHKPISLMGGGTSIIGDPSFRDE   89 (418)
Q Consensus        12 L~~Rg~i~~~~~~~~l~~-~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~-Gh~~i~liG~~T~~IGDPsgk~~   89 (418)
                      +..||++-.-.+-+.+-+ +-++++..+|+||+|||+ +||||++++++++++|+. |+.++++++|.++...++.    
T Consensus        49 ~~rRgi~f~hrd~d~il~~~~~g~~~~vytG~~PSG~-lHLGh~i~~~~~~~~q~~~~~~~~i~iaD~~~~~~~~~----  123 (392)
T 3jxe_A           49 FFRRKFFFSHRDYDLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN----  123 (392)
T ss_dssp             HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCSSC-CBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSS----
T ss_pred             HHHCCEEEECCCHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCCC----
T ss_conf             6752502003689999999972998089968689837-48998999999999997169866999961277652579----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             10246889999999999999887653267776402330167523431346888752234478753478888740356883
Q gi|254780949|r   90 SRRMMRSQEIQENIEKIKGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSL  169 (418)
Q Consensus        90 ~R~~l~~~~i~~n~~~~~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~i  169 (418)
                          .+.+++..++..   .+..++..+-++.++.|..+++|..   +.+..      +.++++.....++.++.-..++
T Consensus       124 ----~~~~~~~~~~~e---~~~~~lA~GlDp~kt~i~~~s~~~~---~~~l~------~~l~~~~~~~~~~~~~~~~~~~  187 (392)
T 3jxe_A          124 ----LTFDDTKRWAYD---NILDIIAVGFDPDKTFIFQNSEFTK---IYEMA------IPIAKKINFSMAKAVFGFTEQS  187 (392)
T ss_dssp             ----CCHHHHHHHHHH---HHHHHHTTCCCTTSEEEEETTTSTH---HHHHH------HHHHHHSBHHHHHHHHCCCTTS
T ss_pred             ----CCHHHHHHHHHH---HHHHHHHCCCCCCCEEEEECCCCHH---HHHHH------HHHHHHCCHHHHHHCCCCCCCC
T ss_conf             ----999999999999---9999998089920359997131157---78887------8898515516665311244455


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCCC---HHHHHHHHCCCC
Q ss_conf             15788989898999999985429702015412588998889999731679717983110236871---022354310123
Q gi|254780949|r  170 SFLEFNYMILQAYDFVELAKNYDCRLQMGGSDQWGNIICGIDLGERLKTPKLFALTSPLLTTASG---TKMGKTLSGAIW  246 (418)
Q Consensus       170 s~~EF~Y~llQayD~~~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~~~~~glT~PLLt~~dG---~KmgKS~~naIw  246 (418)
                      ++.+|+||+|||+|.++++.+   ++..||.||+.++..+||+++|++..+...++.|++.+..|   +|++++.+|+|+
T Consensus       188 ~~g~~~YP~lQaaDil~~~~~---~~VPvG~DQ~~h~~LtRdia~r~n~~~~~~~~~~~ip~l~G~~gKmssS~~~s~I~  264 (392)
T 3jxe_A          188 KIGMIFFPAIQIAPTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIY  264 (392)
T ss_dssp             BHHHHHHHHHHHGGGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCB
T ss_pred             CCCCCCCCHHHHCCHHCCCCC---EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             655446703332320113567---06324477789999999999752788873345432335688766665467888745


Q ss_pred             CCC----------------CCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCHHHHHHHHHHH
Q ss_conf             334----------------579979999988620788898799750688856755543332-1--022026889899999
Q gi|254780949|r  247 LNK----------------EMTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQ-G--KEINEAKKIIATEIT  307 (418)
Q Consensus       247 Ld~----------------~~tSPy~fyQf~~n~~D~dV~kyLklfT~l~l~EI~~l~~~~-~--~~pr~aKk~LA~EiT  307 (418)
                      |..                ...++++.++++-|.++..|..|+++|+..+.++++++.+.- +  -.+.++|+.||+.|+
T Consensus       265 L~D~pe~i~~KI~k~~~~~g~~~~~e~~~~~g~p~~~~v~~~l~~f~~~d~~~l~e~~~~y~~G~l~~ge~K~~lae~l~  344 (392)
T 3jxe_A          265 LTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQ  344 (392)
T ss_dssp             TTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             05899999999974137899860001100368843347999999873899999999999875489898999999999999


Q ss_pred             HHHHHHCH
Q ss_conf             97300000
Q gi|254780949|r  308 TMVHGREE  315 (418)
Q Consensus       308 ~lvHGe~~  315 (418)
                      ++++.-..
T Consensus       345 ~~l~~~~e  352 (392)
T 3jxe_A          345 EFLKEHQR  352 (392)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99899999