HHsearch results for GI: 254780949 and protein with PDBid: 3m5w_A
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Probab=100.00 E-value=1.1e-31 Score=227.78 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=192.2
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHH-HHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 981899984378762024348999-9999999859849999826011144889886210246889999999999999887
Q gi|254780949|r 34 GVVTAYIGYDLTASSLHAGHLTQL-MLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKIKGIFSS 112 (418)
Q Consensus 34 ~~~~~y~G~DpT~~slH~G~l~~~-~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~~~q~~~ 112 (418)
..+++|.||+|||. +||||+++. ..+.++|+ ||+++++|+|+++++.|++ .++++.|+..... .
T Consensus 2 ~~~rv~tG~~PSG~-~HlG~~lg~i~~~~~lQ~-~~~~~~~iaD~ha~~~~~~----------~~~l~~~~~~~~~---~ 66 (322)
T 3m5w_A 2 NAMRVLTGLQPSGD-LHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQD----------GEKLKQNSLKAAA---A 66 (322)
T ss_dssp -CCCBEEEECCSSC-CBHHHHHHTHHHHHHTTT-TSCCEEEECTTTHHHHCCC----------HHHHHHHHHHHHH---H
T ss_pred CCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHCCCCC----------HHHHHHHHHHHHH---H
T ss_conf 97626765078970-547878999999999871-6988999931416116979----------9999999999999---9
Q ss_pred HHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65326777640233016752343134688875223447875347888874035688315788989898999999985429
Q gi|254780949|r 113 FIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKREQSLSFLEFNYMILQAYDFVELAKNYD 192 (418)
Q Consensus 113 ~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~~~~is~~EF~Y~llQayD~~~L~~~~~ 192 (418)
++-.+-.+.+..++.++++ .... ++.-.+....+++++.+...++.|...+..+++.+|+||+|||.|.+++ +
T Consensus 67 ~~a~G~dp~k~~i~~qs~~-~~~~--~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~YP~lqaaDil~~----~ 139 (322)
T 3m5w_A 67 FLSLGIDPQKSVFWLQSDV-KEVM--ELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILLF----D 139 (322)
T ss_dssp HHHTTCCTTTSEEEEGGGC-THHH--HHHHHHHHTCBHHHHHTCHHHHC-------CBHHHHHHHHHHHHHHHHT----T
T ss_pred HHHCCCCCCCEEEEECCCC-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH----C
T ss_conf 9982899985799988850-5678--9999998861148987633311110344676504017777774456762----7
Q ss_pred CCEECCCCHHHHHHHHHHHHHHHCCCC---------CEEEEEECEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 702015412588998889999731679---------71798311023687102235431012333457997999998862
Q gi|254780949|r 193 CRLQMGGSDQWGNIICGIDLGERLKTP---------KLFALTSPLLTTASGTKMGKTLSGAIWLNKEMTSPYNFWQYWRN 263 (418)
Q Consensus 193 ~~iqiGGsDQwgNi~~G~eLir~~~~~---------~~~glT~PLLt~~dG~KmgKS~~naIwLd~~~tSPy~fyQf~~n 263 (418)
+++..||.||..++...||+.+|++.. +...-+.+++.+.+|.|||||.+|+|.|+ +||-+.+.+.++
T Consensus 140 ~~~vpvG~DQ~~h~~ltRdia~k~n~~~~~~~~~p~~~~~~~~~~~~~~~~~KMSkS~~n~I~l~---D~~~~I~kKI~k 216 (322)
T 3m5w_A 140 TRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIF---SSEKTLKKQISS 216 (322)
T ss_dssp CSEEECCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEEEC----CCCBCTTSSBCCGGGTCCCBSS---SCHHHHHHHHHT
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHC
T ss_conf 86222265518999999999999875537654432001343200036899986777888755355---688899886650
Q ss_pred HCHH-------------HHHHHHHHHCCCCHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 0788-------------8987997506888567555433---3210220268898999999730
Q gi|254780949|r 264 IDDA-------------DVVSFAKRLTTLPMSEIDRMAK---LQGKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 264 ~~D~-------------dV~kyLklfT~l~l~EI~~l~~---~~~~~pr~aKk~LA~EiT~lvH 311 (418)
...+ .|..++.++... ++.++++. ..+..+.+.|+.||+.|.+++-
T Consensus 217 a~td~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~~~~~~~~~g~~~~gdlK~~Lae~l~~~L~ 278 (322)
T 3m5w_A 217 IVTDSTALEDPKDHENCNIFKIAKLFLDE--SGQKELQIRYEKGGEGYGHFKIYLNELVNAYFK 278 (322)
T ss_dssp CCCCCCCTTSCCCSTTCHHHHHHGGGCCH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCC--CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 44788886589865566610044313553--422399999997799789999999999999868