HHsearch results for GI: 254780949 and protein with PDBid: 3n9i_A
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis}
Probab=99.91 E-value=5.8e-23 Score=170.32 Aligned_cols=261 Identities=13% Similarity=0.172 Sum_probs=172.2
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99985149818999843787620243489999999999859849999826011144889886210246889999999999
Q gi|254780949|r 27 LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKI 106 (418)
Q Consensus 27 l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~ 106 (418)
+.......+.++|.|+-|||. +||||+++.++-....+.|++++++|.|++++.... +.+++..|+..
T Consensus 7 ~~~~~~~~k~~v~tG~~PSG~-~HlG~~~g~i~~~~~lq~~~~~~~~iAD~halt~~~----------~~~~~~~~~~e- 74 (346)
T 3n9i_A 7 LSKPTVSSKPIVFSGAQPSGE-LTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQ----------DPALLRKRTLD- 74 (346)
T ss_dssp --------CCEEEEEECSCSC-CBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCC----------CHHHHHHHHHH-
T ss_pred CCCCCCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCC----------CHHHHHHHHHH-
T ss_conf 568888999988966588872-558887999999999867898799997788855799----------99999999999-
Q ss_pred HHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf 99988765326777640233016752343134688875223447875347888874035-68831578898989899999
Q gi|254780949|r 107 KGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKR-EQSLSFLEFNYMILQAYDFV 185 (418)
Q Consensus 107 ~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~-~~~is~~EF~Y~llQayD~~ 185 (418)
.+..++-.+-++.+..++.+++--....+.-+ +....++++|-+.-.++.+... ...+.+.-|.||+|||-|.+
T Consensus 75 --~~~~~lA~G~dp~k~~i~~qS~~~~~~el~~~---l~~~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lqaaDIl 149 (346)
T 3n9i_A 75 --TLALYLACGIDPKKSTIFVQSHVPEHSQLSWA---LNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADIL 149 (346)
T ss_dssp --HHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHH---HHTTSBHHHHHTCHHHHHHHHHSGGGCBHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHCCCCHHHCEEEECCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCH
T ss_conf --99999986888445189977654569999999---9501377788754333201001234677202568566513313
Q ss_pred HHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCC--CCEEEEEECE-------EECCC--CHHHHHH---HHCCCCCCCCC
Q ss_conf 998542970201541258899888999973167--9717983110-------23687--1022354---31012333457
Q gi|254780949|r 186 ELAKNYDCRLQMGGSDQWGNIICGIDLGERLKT--PKLFALTSPL-------LTTAS--GTKMGKT---LSGAIWLNKEM 251 (418)
Q Consensus 186 ~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~--~~~~glT~PL-------Lt~~d--G~KmgKS---~~naIwLd~~~ 251 (418)
++ +.++..+|-||.-.+...||+.+|++. ++.|....++ +.+.+ +.||||| .+|+|.|.
T Consensus 150 ~~----~~~~vpvG~DQ~~h~eltRdia~kfn~~y~~~~~~P~~~~~~~~~~~~~l~~~~~kmskSs~s~~n~I~l~--- 222 (346)
T 3n9i_A 150 LY----QTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL--- 222 (346)
T ss_dssp TT----TCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT---
T ss_pred HC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEC---
T ss_conf 10----88734563756999999999999988655883256765657554440157886555665545664278836---
Q ss_pred CCHHHHHHHHHHH--C-------------HHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHH
Q ss_conf 9979999988620--7-------------88898799750688856755543332-10220268898999999730
Q gi|254780949|r 252 TSPYNFWQYWRNI--D-------------DADVVSFAKRLTTLPMSEIDRMAKLQ-GKEINEAKKIIATEITTMVH 311 (418)
Q Consensus 252 tSPy~fyQf~~n~--~-------------D~dV~kyLklfT~l~l~EI~~l~~~~-~~~pr~aKk~LA~EiT~lvH 311 (418)
.||-+...+.++. + .-.|..++++|....-++++++.... +....++|+.||+-+.+.+-
T Consensus 223 d~~~~I~kKI~ka~Td~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~ 298 (346)
T 3n9i_A 223 EDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLS 298 (346)
T ss_dssp SCHHHHHHHHHTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7877888876520157988765657776688611599987502577499999987699889999999999999989