HHsearch results for GI: 254780949 and protein with PDBid: 3n9i_A

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis}
Probab=99.91  E-value=5.8e-23  Score=170.32  Aligned_cols=261  Identities=13%  Similarity=0.172  Sum_probs=172.2

Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99985149818999843787620243489999999999859849999826011144889886210246889999999999
Q gi|254780949|r   27 LDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSIIGDPSFRDESRRMMRSQEIQENIEKI  106 (418)
Q Consensus        27 l~~~l~~~~~~~y~G~DpT~~slH~G~l~~~~~l~~~q~~Gh~~i~liG~~T~~IGDPsgk~~~R~~l~~~~i~~n~~~~  106 (418)
                      +.......+.++|.|+-|||. +||||+++.++-....+.|++++++|.|++++....          +.+++..|+.. 
T Consensus         7 ~~~~~~~~k~~v~tG~~PSG~-~HlG~~~g~i~~~~~lq~~~~~~~~iAD~halt~~~----------~~~~~~~~~~e-   74 (346)
T 3n9i_A            7 LSKPTVSSKPIVFSGAQPSGE-LTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQ----------DPALLRKRTLD-   74 (346)
T ss_dssp             --------CCEEEEEECSCSC-CBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCC----------CHHHHHHHHHH-
T ss_pred             CCCCCCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCC----------CHHHHHHHHHH-
T ss_conf             568888999988966588872-558887999999999867898799997788855799----------99999999999-


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf             99988765326777640233016752343134688875223447875347888874035-68831578898989899999
Q gi|254780949|r  107 KGIFSSFIKYGTGKTDALMLNNETWLCSIKYIDLLREIGSFFSVNRMLSFESVRSRLKR-EQSLSFLEFNYMILQAYDFV  185 (418)
Q Consensus       107 ~~q~~~~~~~~~~~~~~~i~~N~~W~~~~~~~~~lr~~g~~~~v~~mL~rd~v~~Rl~~-~~~is~~EF~Y~llQayD~~  185 (418)
                        .+..++-.+-++.+..++.+++--....+.-+   +....++++|-+.-.++.+... ...+.+.-|.||+|||-|.+
T Consensus        75 --~~~~~lA~G~dp~k~~i~~qS~~~~~~el~~~---l~~~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lqaaDIl  149 (346)
T 3n9i_A           75 --TLALYLACGIDPKKSTIFVQSHVPEHSQLSWA---LNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADIL  149 (346)
T ss_dssp             --HHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHH---HHTTSBHHHHHTCHHHHHHHHHSGGGCBHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHCCCCHHHCEEEECCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCH
T ss_conf             --99999986888445189977654569999999---9501377788754333201001234677202568566513313


Q ss_pred             HHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCC--CCEEEEEECE-------EECCC--CHHHHHH---HHCCCCCCCCC
Q ss_conf             998542970201541258899888999973167--9717983110-------23687--1022354---31012333457
Q gi|254780949|r  186 ELAKNYDCRLQMGGSDQWGNIICGIDLGERLKT--PKLFALTSPL-------LTTAS--GTKMGKT---LSGAIWLNKEM  251 (418)
Q Consensus       186 ~L~~~~~~~iqiGGsDQwgNi~~G~eLir~~~~--~~~~glT~PL-------Lt~~d--G~KmgKS---~~naIwLd~~~  251 (418)
                      ++    +.++..+|-||.-.+...||+.+|++.  ++.|....++       +.+.+  +.|||||   .+|+|.|.   
T Consensus       150 ~~----~~~~vpvG~DQ~~h~eltRdia~kfn~~y~~~~~~P~~~~~~~~~~~~~l~~~~~kmskSs~s~~n~I~l~---  222 (346)
T 3n9i_A          150 LY----QTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL---  222 (346)
T ss_dssp             TT----TCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT---
T ss_pred             HC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEC---
T ss_conf             10----88734563756999999999999988655883256765657554440157886555665545664278836---


Q ss_pred             CCHHHHHHHHHHH--C-------------HHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHH
Q ss_conf             9979999988620--7-------------88898799750688856755543332-10220268898999999730
Q gi|254780949|r  252 TSPYNFWQYWRNI--D-------------DADVVSFAKRLTTLPMSEIDRMAKLQ-GKEINEAKKIIATEITTMVH  311 (418)
Q Consensus       252 tSPy~fyQf~~n~--~-------------D~dV~kyLklfT~l~l~EI~~l~~~~-~~~pr~aKk~LA~EiT~lvH  311 (418)
                      .||-+...+.++.  +             .-.|..++++|....-++++++.... +....++|+.||+-+.+.+-
T Consensus       223 d~~~~I~kKI~ka~Td~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~  298 (346)
T 3n9i_A          223 EDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLS  298 (346)
T ss_dssp             SCHHHHHHHHHTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7877888876520157988765657776688611599987502577499999987699889999999999999989