Query gi|254780951|ref|YP_003065364.1| hypothetical protein CLIBASIA_04250 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 49 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:13:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780951.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1i25_A Huwentoxin-II, HWTX-II 10.7 84 0.0025 14.8 0.6 24 18-41 5-28 (37) 2 >3a2a_A Voltage-gated hydrogen 8.8 1.5E+02 0.0044 13.7 1.3 19 7-25 20-38 (58) 3 >3bo6_A Hydrophilic protein, V 8.7 1.2E+02 0.0036 14.1 0.8 14 11-24 97-110 (220) 4 >3i0u_A Phosphothreonine lyase 8.6 1.2E+02 0.0036 14.0 0.8 15 11-25 95-109 (218) 5 >1d0n_A Horse plasma gelsolin; 8.0 83 0.0024 14.9 -0.3 18 10-27 105-122 (204) 6 >2p1w_A 27.5 kDa virulence pro 7.5 1.5E+02 0.0043 13.7 0.8 14 11-24 127-140 (250) 7 >1xok_C Coat protein; protein- 6.2 1.5E+02 0.0044 13.6 0.3 18 20-37 1-18 (26) 8 >1v18_B APC protein, adenomato 5.0 1.6E+02 0.0048 13.5 -0.1 10 16-25 16-25 (47) 9 >2j8s_A ACRB, acriflavine resi 4.2 3.3E+02 0.0098 12.0 1.1 31 5-35 208-238 (251) 10 >1pfi_A Major coat protein of 3.6 3.8E+02 0.011 11.7 1.9 16 5-20 26-41 (46) No 1 >>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} (A:) Probab=10.66 E-value=84 Score=14.81 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=16.4 Q ss_pred HHHCCCCCCCHHHCCHHHCCCCCC Q ss_conf 631136336211120111026100 Q gi|254780951|r 18 LFSCSSKKGGEKKGAEKKTSAPLK 41 (49) Q Consensus 18 lfscsskkggekkgaekktsaplk 41 (49) -|||.-+|.|++.-.+|+-+.-.+ T Consensus 5 s~sceiek~g~k~ck~kkc~ggwk 28 (37) T 1i25_A 5 SFSCEIEKEGDKPCKKKKCKGGWK 28 (37) T ss_dssp SSCSSSSBCSSSBCBCCCCCTTEE T ss_pred EEEEEECCCCCCCCCCCCCCCCCE T ss_conf 357787003888330033777752 No 2 >>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled coil, ION transport, ionic channel, membrane; 2.00A {Homo sapiens} (A:) Probab=8.81 E-value=1.5e+02 Score=13.65 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHCCCCC Q ss_conf 7899997613563113633 Q gi|254780951|r 7 GTVLMLAISPLLFSCSSKK 25 (49) Q Consensus 7 gtvlmlaispllfscsskk 25 (49) ..-|.-.|..|-|||+.|. T Consensus 20 N~qLa~kiqhLefSC~EKE 38 (58) T 3a2a_A 20 NVQLAAKIQHLEFSCSEKE 38 (58) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 6999999999982230579 No 3 >>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A* (A:) Probab=8.68 E-value=1.2e+02 Score=14.06 Aligned_cols=14 Identities=50% Similarity=0.598 Sum_probs=10.7 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99761356311363 Q gi|254780951|r 11 MLAISPLLFSCSSK 24 (49) Q Consensus 11 mlaispllfscssk 24 (49) .-||++||||-.|- T Consensus 97 F~al~~LL~SeDSP 110 (220) T 3bo6_A 97 FQALSGLLFSVDSP 110 (220) T ss_dssp HHHHHHHHTCTTCS T ss_pred HHHHHHHHCCCCCC T ss_conf 99877876189987 No 4 >>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, plasmid, secreted, virulence, structural genomics; 2.70A {Shigella flexneri} (A:) Probab=8.63 E-value=1.2e+02 Score=14.05 Aligned_cols=15 Identities=40% Similarity=0.374 Sum_probs=11.1 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 997613563113633 Q gi|254780951|r 11 MLAISPLLFSCSSKK 25 (49) Q Consensus 11 mlaispllfscsskk 25 (49) .-||++||||-.|-- T Consensus 95 F~al~~LL~SeDSPv 109 (218) T 3i0u_A 95 FQILSGLLFSEDSPI 109 (218) T ss_dssp HHHHHHHHTCTTCSC T ss_pred HHHHHHHHCCCCCCC T ss_conf 998888861899864 No 5 >>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein domain packing, contractIle protein; 2.50A {Equus caballus} (A:389-482,A:598-707) Probab=8.00 E-value=83 Score=14.86 Aligned_cols=18 Identities=50% Similarity=0.696 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHCCCCCCC Q ss_conf 999761356311363362 Q gi|254780951|r 10 LMLAISPLLFSCSSKKGG 27 (49) Q Consensus 10 lmlaispllfscsskkgg 27 (49) -|-|-.|-||.||.|-|. T Consensus 105 ~~~a~~~~~~~~~~~~~~ 122 (204) T 1d0n_A 105 KMDAHPPRLFACSNKIGR 122 (204) T ss_dssp HHHHSCCEEEEEECTTTC T ss_pred CCCCCCCEEEEEECCCCC T ss_conf 422368617999889798 No 6 >>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis} (A:) Probab=7.52 E-value=1.5e+02 Score=13.67 Aligned_cols=14 Identities=50% Similarity=0.527 Sum_probs=10.5 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99761356311363 Q gi|254780951|r 11 MLAISPLLFSCSSK 24 (49) Q Consensus 11 mlaispllfscssk 24 (49) .-||++||||-.|- T Consensus 127 F~al~~LL~SeDSP 140 (250) T 2p1w_A 127 FQALSGLLFSEDSP 140 (250) T ss_dssp HHHHHHHHTCTTCS T ss_pred HHHHHHHHCCCCCC T ss_conf 99877876189987 No 7 >>1xok_C Coat protein; protein-RNA complex, alpha helix, atypical RNA duplex, viral protein/RNA complex; 3.00A {Synthetic} (C:) Probab=6.24 E-value=1.5e+02 Score=13.62 Aligned_cols=18 Identities=50% Similarity=0.578 Sum_probs=10.7 Q ss_pred HCCCCCCCHHHCCHHHCC Q ss_conf 113633621112011102 Q gi|254780951|r 20 SCSSKKGGEKKGAEKKTS 37 (49) Q Consensus 20 scsskkggekkgaekkts 37 (49) |.|.||.|.|.|...|.| T Consensus 1 sssqkkaggkagkptkrs 18 (26) T 1xok_C 1 SSSQKKAGGKAGKPTKRS 18 (26) T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 921001466578975100 No 8 >>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens} (B:) Probab=5.00 E-value=1.6e+02 Score=13.45 Aligned_cols=10 Identities=50% Similarity=0.666 Sum_probs=6.4 Q ss_pred HHHHHCCCCC Q ss_conf 3563113633 Q gi|254780951|r 16 PLLFSCSSKK 25 (49) Q Consensus 16 pllfscsskk 25 (49) |--|||+|.- T Consensus 16 ~e~FSCassL 25 (47) T 1v18_B 16 PDGFSCSXXL 25 (47) T ss_dssp CCCCC----C T ss_pred CCCCCHHHHC T ss_conf 9983313310 No 9 >>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:505-567,A:868-1055) Probab=4.25 E-value=3.3e+02 Score=11.98 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHCCHHH Q ss_conf 6578999976135631136336211120111 Q gi|254780951|r 5 IIGTVLMLAISPLLFSCSSKKGGEKKGAEKK 35 (49) Q Consensus 5 iigtvlmlaispllfscsskkggekkgaekk 35 (49) +++++..+.+.|.+++.-.++-..++...++ T Consensus 208 l~s~i~~l~~~Pal~~~~~~~~~~~~~~~~~ 238 (251) T 2j8s_A 208 VTATVLAIFFVPVFFVVVRRRFSRKNEDIEH 238 (251) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSBC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999999999999998753146775555 No 10 >>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} (A:) Probab=3.62 E-value=3.8e+02 Score=11.71 Aligned_cols=16 Identities=38% Similarity=0.906 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6578999976135631 Q gi|254780951|r 5 IIGTVLMLAISPLLFS 20 (49) Q Consensus 5 iigtvlmlaispllfs 20 (49) |.|....||..-|.+| T Consensus 26 ivgalvilavagliys 41 (46) T 1pfi_A 26 IVGALVILAVAGLIYS 41 (46) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 Done!