Query         gi|254780951|ref|YP_003065364.1| hypothetical protein CLIBASIA_04250 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:13:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780951.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1i25_A Huwentoxin-II, HWTX-II  10.7      84  0.0025   14.8   0.6   24   18-41      5-28  (37)
  2 >3a2a_A Voltage-gated hydrogen   8.8 1.5E+02  0.0044   13.7   1.3   19    7-25     20-38  (58)
  3 >3bo6_A Hydrophilic protein, V   8.7 1.2E+02  0.0036   14.1   0.8   14   11-24     97-110 (220)
  4 >3i0u_A Phosphothreonine lyase   8.6 1.2E+02  0.0036   14.0   0.8   15   11-25     95-109 (218)
  5 >1d0n_A Horse plasma gelsolin;   8.0      83  0.0024   14.9  -0.3   18   10-27    105-122 (204)
  6 >2p1w_A 27.5 kDa virulence pro   7.5 1.5E+02  0.0043   13.7   0.8   14   11-24    127-140 (250)
  7 >1xok_C Coat protein; protein-   6.2 1.5E+02  0.0044   13.6   0.3   18   20-37      1-18  (26)
  8 >1v18_B APC protein, adenomato   5.0 1.6E+02  0.0048   13.5  -0.1   10   16-25     16-25  (47)
  9 >2j8s_A ACRB, acriflavine resi   4.2 3.3E+02  0.0098   12.0   1.1   31    5-35    208-238 (251)
 10 >1pfi_A Major coat protein of    3.6 3.8E+02   0.011   11.7   1.9   16    5-20     26-41  (46)

No 1  
>>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} (A:)
Probab=10.66  E-value=84  Score=14.81  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=16.4

Q ss_pred             HHHCCCCCCCHHHCCHHHCCCCCC
Q ss_conf             631136336211120111026100
Q gi|254780951|r   18 LFSCSSKKGGEKKGAEKKTSAPLK   41 (49)
Q Consensus        18 lfscsskkggekkgaekktsaplk   41 (49)
                      -|||.-+|.|++.-.+|+-+.-.+
T Consensus         5 s~sceiek~g~k~ck~kkc~ggwk   28 (37)
T 1i25_A            5 SFSCEIEKEGDKPCKKKKCKGGWK   28 (37)
T ss_dssp             SSCSSSSBCSSSBCBCCCCCTTEE
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCE
T ss_conf             357787003888330033777752


No 2  
>>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled coil, ION transport, ionic channel, membrane; 2.00A {Homo sapiens} (A:)
Probab=8.81  E-value=1.5e+02  Score=13.65  Aligned_cols=19  Identities=42%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             7899997613563113633
Q gi|254780951|r    7 GTVLMLAISPLLFSCSSKK   25 (49)
Q Consensus         7 gtvlmlaispllfscsskk   25 (49)
                      ..-|.-.|..|-|||+.|.
T Consensus        20 N~qLa~kiqhLefSC~EKE   38 (58)
T 3a2a_A           20 NVQLAAKIQHLEFSCSEKE   38 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             6999999999982230579


No 3  
>>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A* (A:)
Probab=8.68  E-value=1.2e+02  Score=14.06  Aligned_cols=14  Identities=50%  Similarity=0.598  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99761356311363
Q gi|254780951|r   11 MLAISPLLFSCSSK   24 (49)
Q Consensus        11 mlaispllfscssk   24 (49)
                      .-||++||||-.|-
T Consensus        97 F~al~~LL~SeDSP  110 (220)
T 3bo6_A           97 FQALSGLLFSVDSP  110 (220)
T ss_dssp             HHHHHHHHTCTTCS
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99877876189987


No 4  
>>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, plasmid, secreted, virulence, structural genomics; 2.70A {Shigella flexneri} (A:)
Probab=8.63  E-value=1.2e+02  Score=14.05  Aligned_cols=15  Identities=40%  Similarity=0.374  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             997613563113633
Q gi|254780951|r   11 MLAISPLLFSCSSKK   25 (49)
Q Consensus        11 mlaispllfscsskk   25 (49)
                      .-||++||||-.|--
T Consensus        95 F~al~~LL~SeDSPv  109 (218)
T 3i0u_A           95 FQILSGLLFSEDSPI  109 (218)
T ss_dssp             HHHHHHHHTCTTCSC
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             998888861899864


No 5  
>>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein domain packing, contractIle protein; 2.50A {Equus caballus} (A:389-482,A:598-707)
Probab=8.00  E-value=83  Score=14.86  Aligned_cols=18  Identities=50%  Similarity=0.696  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHCCCCCCC
Q ss_conf             999761356311363362
Q gi|254780951|r   10 LMLAISPLLFSCSSKKGG   27 (49)
Q Consensus        10 lmlaispllfscsskkgg   27 (49)
                      -|-|-.|-||.||.|-|.
T Consensus       105 ~~~a~~~~~~~~~~~~~~  122 (204)
T 1d0n_A          105 KMDAHPPRLFACSNKIGR  122 (204)
T ss_dssp             HHHHSCCEEEEEECTTTC
T ss_pred             CCCCCCCEEEEEECCCCC
T ss_conf             422368617999889798


No 6  
>>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis} (A:)
Probab=7.52  E-value=1.5e+02  Score=13.67  Aligned_cols=14  Identities=50%  Similarity=0.527  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99761356311363
Q gi|254780951|r   11 MLAISPLLFSCSSK   24 (49)
Q Consensus        11 mlaispllfscssk   24 (49)
                      .-||++||||-.|-
T Consensus       127 F~al~~LL~SeDSP  140 (250)
T 2p1w_A          127 FQALSGLLFSEDSP  140 (250)
T ss_dssp             HHHHHHHHTCTTCS
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99877876189987


No 7  
>>1xok_C Coat protein; protein-RNA complex, alpha helix, atypical RNA duplex, viral protein/RNA complex; 3.00A {Synthetic} (C:)
Probab=6.24  E-value=1.5e+02  Score=13.62  Aligned_cols=18  Identities=50%  Similarity=0.578  Sum_probs=10.7

Q ss_pred             HCCCCCCCHHHCCHHHCC
Q ss_conf             113633621112011102
Q gi|254780951|r   20 SCSSKKGGEKKGAEKKTS   37 (49)
Q Consensus        20 scsskkggekkgaekkts   37 (49)
                      |.|.||.|.|.|...|.|
T Consensus         1 sssqkkaggkagkptkrs   18 (26)
T 1xok_C            1 SSSQKKAGGKAGKPTKRS   18 (26)
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             921001466578975100


No 8  
>>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens} (B:)
Probab=5.00  E-value=1.6e+02  Score=13.45  Aligned_cols=10  Identities=50%  Similarity=0.666  Sum_probs=6.4

Q ss_pred             HHHHHCCCCC
Q ss_conf             3563113633
Q gi|254780951|r   16 PLLFSCSSKK   25 (49)
Q Consensus        16 pllfscsskk   25 (49)
                      |--|||+|.-
T Consensus        16 ~e~FSCassL   25 (47)
T 1v18_B           16 PDGFSCSXXL   25 (47)
T ss_dssp             CCCCC----C
T ss_pred             CCCCCHHHHC
T ss_conf             9983313310


No 9  
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:505-567,A:868-1055)
Probab=4.25  E-value=3.3e+02  Score=11.98  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHCCHHH
Q ss_conf             6578999976135631136336211120111
Q gi|254780951|r    5 IIGTVLMLAISPLLFSCSSKKGGEKKGAEKK   35 (49)
Q Consensus         5 iigtvlmlaispllfscsskkggekkgaekk   35 (49)
                      +++++..+.+.|.+++.-.++-..++...++
T Consensus       208 l~s~i~~l~~~Pal~~~~~~~~~~~~~~~~~  238 (251)
T 2j8s_A          208 VTATVLAIFFVPVFFVVVRRRFSRKNEDIEH  238 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCSSCCSSBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999999999998753146775555


No 10 
>>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} (A:)
Probab=3.62  E-value=3.8e+02  Score=11.71  Aligned_cols=16  Identities=38%  Similarity=0.906  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             6578999976135631
Q gi|254780951|r    5 IIGTVLMLAISPLLFS   20 (49)
Q Consensus         5 iigtvlmlaispllfs   20 (49)
                      |.|....||..-|.+|
T Consensus        26 ivgalvilavagliys   41 (46)
T 1pfi_A           26 IVGALVILAVAGLIYS   41 (46)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


Done!