Query gi|254780951|ref|YP_003065364.1| hypothetical protein CLIBASIA_04250 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 49 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:39:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780951.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3i0u_A Phosphothreonine lyase 8.3 90 0.0038 14.0 0.8 15 11-25 95-109 (218) 2 3a2a_A Voltage-gated hydrogen 7.8 1.2E+02 0.0051 13.3 1.3 20 6-25 19-38 (58) 3 1i25_A Huwentoxin-II, HWTX-II; 7.8 91 0.0038 13.9 0.6 22 18-39 5-26 (37) 4 2p1w_A 27.5 kDa virulence prot 7.7 1E+02 0.0042 13.7 0.8 14 11-24 127-140 (250) 5 3bo6_A Hydrophilic protein, VI 7.6 1E+02 0.0043 13.7 0.8 14 11-24 97-110 (220) 6 1xok_C Coat protein; protein-R 6.2 1.1E+02 0.0044 13.6 0.3 18 20-37 1-18 (26) 7 1z8y_I Spike glycoprotein E1; 5.2 1.3E+02 0.0056 13.1 0.3 12 13-24 14-25 (31) 8 1v18_B APC protein, adenomatou 5.2 1.1E+02 0.0046 13.5 -0.1 10 16-25 16-25 (47) 9 1afo_A Glycophorin A; integral 4.2 2.3E+02 0.0099 12.0 1.5 12 4-15 22-33 (40) 10 1pfi_A Major coat protein of P 3.6 2.7E+02 0.011 11.7 1.9 19 4-22 25-43 (46) No 1 >3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, plasmid, secreted, virulence, structural genomics; 2.70A {Shigella flexneri} Probab=8.34 E-value=90 Score=13.95 Aligned_cols=15 Identities=40% Similarity=0.374 Sum_probs=11.1 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 997613563113633 Q gi|254780951|r 11 MLAISPLLFSCSSKK 25 (49) Q Consensus 11 mlaispllfscsskk 25 (49) .-||++||||-.|-- T Consensus 95 F~al~~LL~SeDSPv 109 (218) T 3i0u_A 95 FQILSGLLFSEDSPI 109 (218) T ss_dssp HHHHHHHHTCTTCSC T ss_pred HHHHHHHHCCCCCCC T ss_conf 998788861899874 No 2 >3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens} Probab=7.79 E-value=1.2e+02 Score=13.32 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHCCCCC Q ss_conf 57899997613563113633 Q gi|254780951|r 6 IGTVLMLAISPLLFSCSSKK 25 (49) Q Consensus 6 igtvlmlaispllfscsskk 25 (49) +..-|.-.|..|-|||+.|. T Consensus 19 ~N~qLatkvqhLe~SC~EKE 38 (58) T 3a2a_A 19 MNVQLAAKIQHLEFSCSEKE 38 (58) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 86999999999982230579 No 3 >1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2 Probab=7.77 E-value=91 Score=13.93 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=14.7 Q ss_pred HHHCCCCCCCHHHCCHHHCCCC Q ss_conf 6311363362111201110261 Q gi|254780951|r 18 LFSCSSKKGGEKKGAEKKTSAP 39 (49) Q Consensus 18 lfscsskkggekkgaekktsap 39 (49) .|||.-+|.|+|--.+||.+.- T Consensus 5 ~~scdi~k~g~kpck~kk~kgg 26 (37) T 1i25_A 5 SFSCEIEKEGDKPCKKKKCKGG 26 (37) T ss_dssp SSCSSSSBCSSSBCBCCCCCTT T ss_pred EEEEEECCCCCCCCCCCCCCCC T ss_conf 8887750167888876668877 No 4 >2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis} Probab=7.70 E-value=1e+02 Score=13.74 Aligned_cols=14 Identities=50% Similarity=0.527 Sum_probs=10.2 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99761356311363 Q gi|254780951|r 11 MLAISPLLFSCSSK 24 (49) Q Consensus 11 mlaispllfscssk 24 (49) .-||++||||-.|- T Consensus 127 F~al~~LL~SeDSP 140 (250) T 2p1w_A 127 FQALSGLLFSEDSP 140 (250) T ss_dssp HHHHHHHHTCTTCS T ss_pred HHHHHHHHCCCCCC T ss_conf 99877876189887 No 5 >3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A* Probab=7.61 E-value=1e+02 Score=13.70 Aligned_cols=14 Identities=50% Similarity=0.598 Sum_probs=10.7 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99761356311363 Q gi|254780951|r 11 MLAISPLLFSCSSK 24 (49) Q Consensus 11 mlaispllfscssk 24 (49) .-||++||||-.|- T Consensus 97 F~al~~LL~SeDSP 110 (220) T 3bo6_A 97 FQALSGLLFSVDSP 110 (220) T ss_dssp HHHHHHHHTCTTCS T ss_pred HHHHHHHHCCCCCC T ss_conf 99878886189987 No 6 >1xok_C Coat protein; protein-RNA complex, alpha helix, atypical RNA duplex, viral protein/RNA complex; 3.00A {Synthetic} SCOP: j.9.7.1 Probab=6.24 E-value=1.1e+02 Score=13.62 Aligned_cols=18 Identities=50% Similarity=0.578 Sum_probs=10.7 Q ss_pred HCCCCCCCHHHCCHHHCC Q ss_conf 113633621112011102 Q gi|254780951|r 20 SCSSKKGGEKKGAEKKTS 37 (49) Q Consensus 20 scsskkggekkgaekkts 37 (49) |.|.||.|.|.|...|.| T Consensus 1 sssqkkaggkagkptkrs 18 (26) T 1xok_C 1 SSSQKKAGGKAGKPTKRS 18 (26) T ss_pred CCCCCCCCCCCCCCCCCC T ss_conf 921001466578975100 No 7 >1z8y_I Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus} Probab=5.19 E-value=1.3e+02 Score=13.13 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=7.9 Q ss_pred HHHHHHHHCCCC Q ss_conf 761356311363 Q gi|254780951|r 13 AISPLLFSCSSK 24 (49) Q Consensus 13 aispllfscssk 24 (49) .|.-+.|.||+- T Consensus 14 viGl~i~~CS~m 25 (31) T 1z8y_I 14 IIGLMIFACSMM 25 (31) T ss_dssp TTTTTHHHHTTS T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 8 >1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens} Probab=5.16 E-value=1.1e+02 Score=13.53 Aligned_cols=10 Identities=60% Similarity=0.743 Sum_probs=6.4 Q ss_pred HHHHHCCCCC Q ss_conf 3563113633 Q gi|254780951|r 16 PLLFSCSSKK 25 (49) Q Consensus 16 pllfscsskk 25 (49) |--|||+|.- T Consensus 16 ~e~fscassl 25 (47) T 1v18_B 16 PDGFSCSSSL 25 (47) T ss_dssp CCCCC----C T ss_pred CCCCCHHHHC T ss_conf 9983203201 No 9 >1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 Probab=4.21 E-value=2.3e+02 Score=11.97 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 465789999761 Q gi|254780951|r 4 RIIGTVLMLAIS 15 (49) Q Consensus 4 riigtvlmlais 15 (49) -+|||.|.+..+ T Consensus 22 gvigtillisy~ 33 (40) T 1afo_A 22 GVIGTILLISYG 33 (40) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 899999999999 No 10 >1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 3ifm_A 4ifm_A Probab=3.63 E-value=2.7e+02 Score=11.71 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 4657899997613563113 Q gi|254780951|r 4 RIIGTVLMLAISPLLFSCS 22 (49) Q Consensus 4 riigtvlmlaispllfscs 22 (49) -|.|....||..-|.+|.- T Consensus 25 yivgalvilavagliysml 43 (46) T 1pfi_A 25 YIVGALVILAVAGLIYSML 43 (46) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 3999999999999999998 Done!