Query         gi|254780951|ref|YP_003065364.1| hypothetical protein CLIBASIA_04250 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 23:39:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780951.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3i0u_A Phosphothreonine lyase    8.3      90  0.0038   14.0   0.8   15   11-25     95-109 (218)
  2 3a2a_A Voltage-gated hydrogen    7.8 1.2E+02  0.0051   13.3   1.3   20    6-25     19-38  (58)
  3 1i25_A Huwentoxin-II, HWTX-II;   7.8      91  0.0038   13.9   0.6   22   18-39      5-26  (37)
  4 2p1w_A 27.5 kDa virulence prot   7.7   1E+02  0.0042   13.7   0.8   14   11-24    127-140 (250)
  5 3bo6_A Hydrophilic protein, VI   7.6   1E+02  0.0043   13.7   0.8   14   11-24     97-110 (220)
  6 1xok_C Coat protein; protein-R   6.2 1.1E+02  0.0044   13.6   0.3   18   20-37      1-18  (26)
  7 1z8y_I Spike glycoprotein E1;    5.2 1.3E+02  0.0056   13.1   0.3   12   13-24     14-25  (31)
  8 1v18_B APC protein, adenomatou   5.2 1.1E+02  0.0046   13.5  -0.1   10   16-25     16-25  (47)
  9 1afo_A Glycophorin A; integral   4.2 2.3E+02  0.0099   12.0   1.5   12    4-15     22-33  (40)
 10 1pfi_A Major coat protein of P   3.6 2.7E+02   0.011   11.7   1.9   19    4-22     25-43  (46)

No 1  
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, plasmid, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=8.34  E-value=90  Score=13.95  Aligned_cols=15  Identities=40%  Similarity=0.374  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             997613563113633
Q gi|254780951|r   11 MLAISPLLFSCSSKK   25 (49)
Q Consensus        11 mlaispllfscsskk   25 (49)
                      .-||++||||-.|--
T Consensus        95 F~al~~LL~SeDSPv  109 (218)
T 3i0u_A           95 FQILSGLLFSEDSPI  109 (218)
T ss_dssp             HHHHHHHHTCTTCSC
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             998788861899874


No 2  
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=7.79  E-value=1.2e+02  Score=13.32  Aligned_cols=20  Identities=40%  Similarity=0.582  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCC
Q ss_conf             57899997613563113633
Q gi|254780951|r    6 IGTVLMLAISPLLFSCSSKK   25 (49)
Q Consensus         6 igtvlmlaispllfscsskk   25 (49)
                      +..-|.-.|..|-|||+.|.
T Consensus        19 ~N~qLatkvqhLe~SC~EKE   38 (58)
T 3a2a_A           19 MNVQLAAKIQHLEFSCSEKE   38 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             86999999999982230579


No 3  
>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2
Probab=7.77  E-value=91  Score=13.93  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=14.7

Q ss_pred             HHHCCCCCCCHHHCCHHHCCCC
Q ss_conf             6311363362111201110261
Q gi|254780951|r   18 LFSCSSKKGGEKKGAEKKTSAP   39 (49)
Q Consensus        18 lfscsskkggekkgaekktsap   39 (49)
                      .|||.-+|.|+|--.+||.+.-
T Consensus         5 ~~scdi~k~g~kpck~kk~kgg   26 (37)
T 1i25_A            5 SFSCEIEKEGDKPCKKKKCKGG   26 (37)
T ss_dssp             SSCSSSSBCSSSBCBCCCCCTT
T ss_pred             EEEEEECCCCCCCCCCCCCCCC
T ss_conf             8887750167888876668877


No 4  
>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis}
Probab=7.70  E-value=1e+02  Score=13.74  Aligned_cols=14  Identities=50%  Similarity=0.527  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99761356311363
Q gi|254780951|r   11 MLAISPLLFSCSSK   24 (49)
Q Consensus        11 mlaispllfscssk   24 (49)
                      .-||++||||-.|-
T Consensus       127 F~al~~LL~SeDSP  140 (250)
T 2p1w_A          127 FQALSGLLFSEDSP  140 (250)
T ss_dssp             HHHHHHHHTCTTCS
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99877876189887


No 5  
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=7.61  E-value=1e+02  Score=13.70  Aligned_cols=14  Identities=50%  Similarity=0.598  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99761356311363
Q gi|254780951|r   11 MLAISPLLFSCSSK   24 (49)
Q Consensus        11 mlaispllfscssk   24 (49)
                      .-||++||||-.|-
T Consensus        97 F~al~~LL~SeDSP  110 (220)
T 3bo6_A           97 FQALSGLLFSVDSP  110 (220)
T ss_dssp             HHHHHHHHTCTTCS
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99878886189987


No 6  
>1xok_C Coat protein; protein-RNA complex, alpha helix, atypical RNA duplex, viral protein/RNA complex; 3.00A {Synthetic} SCOP: j.9.7.1
Probab=6.24  E-value=1.1e+02  Score=13.62  Aligned_cols=18  Identities=50%  Similarity=0.578  Sum_probs=10.7

Q ss_pred             HCCCCCCCHHHCCHHHCC
Q ss_conf             113633621112011102
Q gi|254780951|r   20 SCSSKKGGEKKGAEKKTS   37 (49)
Q Consensus        20 scsskkggekkgaekkts   37 (49)
                      |.|.||.|.|.|...|.|
T Consensus         1 sssqkkaggkagkptkrs   18 (26)
T 1xok_C            1 SSSQKKAGGKAGKPTKRS   18 (26)
T ss_pred             CCCCCCCCCCCCCCCCCC
T ss_conf             921001466578975100


No 7  
>1z8y_I Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus}
Probab=5.19  E-value=1.3e+02  Score=13.13  Aligned_cols=12  Identities=33%  Similarity=0.719  Sum_probs=7.9

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             761356311363
Q gi|254780951|r   13 AISPLLFSCSSK   24 (49)
Q Consensus        13 aispllfscssk   24 (49)
                      .|.-+.|.||+-
T Consensus        14 viGl~i~~CS~m   25 (31)
T 1z8y_I           14 IIGLMIFACSMM   25 (31)
T ss_dssp             TTTTTHHHHTTS
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999998


No 8  
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=5.16  E-value=1.1e+02  Score=13.53  Aligned_cols=10  Identities=60%  Similarity=0.743  Sum_probs=6.4

Q ss_pred             HHHHHCCCCC
Q ss_conf             3563113633
Q gi|254780951|r   16 PLLFSCSSKK   25 (49)
Q Consensus        16 pllfscsskk   25 (49)
                      |--|||+|.-
T Consensus        16 ~e~fscassl   25 (47)
T 1v18_B           16 PDGFSCSSSL   25 (47)
T ss_dssp             CCCCC----C
T ss_pred             CCCCCHHHHC
T ss_conf             9983203201


No 9  
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=4.21  E-value=2.3e+02  Score=11.97  Aligned_cols=12  Identities=33%  Similarity=0.797  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             465789999761
Q gi|254780951|r    4 RIIGTVLMLAIS   15 (49)
Q Consensus         4 riigtvlmlais   15 (49)
                      -+|||.|.+..+
T Consensus        22 gvigtillisy~   33 (40)
T 1afo_A           22 GVIGTILLISYG   33 (40)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999


No 10 
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 3ifm_A 4ifm_A
Probab=3.63  E-value=2.7e+02  Score=11.71  Aligned_cols=19  Identities=32%  Similarity=0.679  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHCC
Q ss_conf             4657899997613563113
Q gi|254780951|r    4 RIIGTVLMLAISPLLFSCS   22 (49)
Q Consensus         4 riigtvlmlaispllfscs   22 (49)
                      -|.|....||..-|.+|.-
T Consensus        25 yivgalvilavagliysml   43 (46)
T 1pfi_A           25 YIVGALVILAVAGLIYSML   43 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             3999999999999999998


Done!