HHsearch alignment for GI: 254780952 and conserved domain: COG0210
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=926.00 Aligned_cols=620 Identities=39% Similarity=0.596 Sum_probs=556.3
Q ss_pred HCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC-C--CC
Q ss_conf 62998899998538989669995889883589999999999808999788676211479999999999985164-5--87
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE-K--IP 104 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~-~--~~ 104 (685)
T Consensus 1 ~~Ln~~Q~~av~~-~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~~~~~ 79 (655)
T COG0210 1 SKLNPEQREAVLH-PDGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPAAEGL 79 (655)
T ss_pred CCCCHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 9999899998618-899869995799861899999999998738957577177896769999999999987385544653
Q ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH--C
Q ss_conf 896178999999998499848798980728999999999999973-9985478989999998667541589646121--1
Q gi|254780952|r 105 RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDL-QIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQ--S 181 (685)
Q Consensus 105 ~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~--~ 181 (685)
T Consensus 80 ~v~TfHs~~~~~lr~~~~~~~~~~~f~i~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~ 159 (655)
T COG0210 80 TVGTFHSFALRILRRHGERLGLNANFTILDSDDQLALIKELLRRELNLDDKELLPREALRYISEAKNALLSPLEASALLL 159 (655)
T ss_pred EEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99983467799999978854866687110520078999999865416641100389999988999872678242015554
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 46--53899999999975577775300111000124543012-0688974012210253210775113468878775111
Q gi|254780952|r 182 SL--TEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQK 258 (685)
Q Consensus 182 ~~--~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~ 258 (685)
T Consensus 160 ~~~~~~~~~~~~~~y~~Y~~~~~~~~~~df~dll~~~~~ll~~~~~v~~~~~~rf~~iLvDE~QDtn~~Q~~ll~~la~~ 239 (655)
T COG0210 160 AAIKSEAEKKLAELYEEYQELLRLNNALDFDDLLLLALRLLEENPEVLEALQARFRYILVDEFQDTNPLQYELLKLLAGN 239 (655)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 01342689999999999999987658536899999999872348478999995689898787778518799999998448
Q ss_pred CCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 12678875999953068863113322013455420576640678761267514678752024443432010122221023
Q gi|254780952|r 259 EDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDC 338 (685)
Q Consensus 259 ~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~ 338 (685)
T Consensus 240 -----~~~l~~VGD~dQsIY~frGA~~~ni~~f~~df~~~~~i~Le~nyRSt~~Il~~An~~i~~n~~r~~k~l~~~~-~ 313 (655)
T COG0210 240 -----AANLFVVGDDDQSIYGFRGADPENILDFEKDFPAAKVIKLEQNYRSTPNILAAANKVIANNKKRQAKTLRTEV-E 313 (655)
T ss_pred -----CCCEEEECCCCCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-C
T ss_conf -----7757998589873676778783678978763565546760424488899999999998718652334211023-5
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHC-CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEE-CC-CCCCCCCCHH
Q ss_conf 55674488731553100000000136665311-365303111010014788998752023320320-33-1000112102
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTG-MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVI-GG-SFYDRQEIRD 415 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g-~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~-g~-~~f~~~eV~~ 415 (685)
T Consensus 314 ~~~~~~~~~~~~~~~~ea~~i~~~I~~l~~~~~~~~~d~aiL~R~n~~s~~~e~~l~~~~ipy~i~~gg~~f~~r~eikd 393 (655)
T COG0210 314 GSGEKVVLLLANDEEDEARWIASEIDALIEIGKVNYSDIAILYRTNAQSRLIEEALRAAGIPYRIVIGGTSFFERKEIKD 393 (655)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
T ss_conf 67788569867881778999999999999826888030788861566778899998662897477537076651699999
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999988466302457530468754650246688887887739846899976410467997785433434333566653
Q gi|254780952|r 416 ALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNN 495 (685)
Q Consensus 416 lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 495 (685)
T Consensus 394 ~l~~l~~~~n~~d~~~~~r~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~f~~~~~~~~~ 473 (655)
T COG0210 394 LLAYLRLVLNPDDDAAFLRILNLPKRGIGDATLKKLLELARERNLSLLEALKALLSFIRLSERGLALLLDFAELIEELRE 473 (655)
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99997323476757889998513344320668999999986512137898898774143547789899999999999987
Q ss_pred HCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCCCC--CC
Q ss_conf 1024660222333477709667885068845589888439999999830268----89999975765422111545--89
Q gi|254780952|r 496 CSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHET----LEGFVLQAPLRENLGSFIPD--SN 569 (685)
Q Consensus 496 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~s----l~~fl~~~~~~~~~~~~~~~--~d 569 (685)
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~el~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~~~~~ 553 (655)
T COG0210 474 AILLSTALELIRELLEALGYLEALLEAGSLVAAEDRLENLEELLDVLKRYAEPRESLRAFLSELSLLANDEEEEEPDEDG 553 (655)
T ss_pred HHCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf 30223399999999875056899986335014577887899999999874124507999999988611033310224578
Q ss_pred CEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHH--HHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 36999611345566983698468576684221299678--7899999999985864116998313211257654333555
Q gi|254780952|r 570 CIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGN--VEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQP 647 (685)
Q Consensus 570 ~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~--~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~ 647 (685)
T Consensus 554 ~V~lmT~H~aKGlEf~~Vfl~g~~eg~~P~~~~~~~~~~~~eEERRL~YVaiTRA~~~L~~t~~~~~~~~-----~~~~~ 628 (655)
T COG0210 554 QVNLMTIHAAKGLEFPYVFLVGLEEGLFPADRSLDEGDEPLEEERRLLYVAITRAKKKLYLTYAASRKLW-----GKEVE 628 (655)
T ss_pred CEEEEEHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCC
T ss_conf 4699720131377687567855536889870000067877655888999987888765533236555532-----65234
Q ss_pred CCCCCHHHHCCC
Q ss_conf 688872331478
Q gi|254780952|r 648 SQVSQFLLELYD 659 (685)
Q Consensus 648 ~~~SrFl~El~~ 659 (685)
T Consensus 629 ~~~srFi~e~~~ 640 (655)
T COG0210 629 EEPSRFVSELPA 640 (655)
T ss_pred CCCCHHHHHHHH
T ss_conf 473578775048