HHsearch alignment for GI: 254780952 and conserved domain: COG1074
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=711.36 Aligned_cols=589 Identities=25% Similarity=0.354 Sum_probs=404.4
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEEECHHHHHHHHHHHHHHCCC------
Q ss_conf 2998899998538989669995889883589999999999808-999788676211479999999999985164------
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHK-EIPPSKILAMTFTNQAIQEMKNRLACYLGE------ 101 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~-~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~------ 101 (685)
T Consensus 3 ~~~~~~~~~~-~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~~~ 81 (1139)
T COG1074 3 DSTEALQPLA-SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQEND 81 (1139)
T ss_pred CCHHHHCHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4254425553-586666899966889842169999999997258998557234406388899999999999999987000
Q ss_pred ----------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----------------------------------5878961789999999984998487989807289999999999999
Q gi|254780952|r 102 ----------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLK 147 (685)
Q Consensus 102 ----------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 147 (685)
T Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~I~Tih~Fc~~~L~~~~~~~~~~~~fe~~~d~--~~l~~e~~~ 159 (1139)
T COG1074 82 EKLASDDELLEALAALIQALIQAIRLFALALETNDEAAIFTIHGFCQRILRQFALEAGISFDFELLEDE--SDLFLELVE 159 (1139)
T ss_pred HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCH--HHHHHHHHH
T ss_conf 100010267887541431189999999999847785346413889999999847751776542000266--899999999
Q ss_pred HC----CC----------------C---------------CCCCC--------H--------------------------
Q ss_conf 73----99----------------8---------------54789--------8--------------------------
Q gi|254780952|r 148 DL----QI----------------D---------------DKDYD--------P-------------------------- 158 (685)
Q Consensus 148 ~~----~~----------------~---------------~~~~~--------~-------------------------- 158 (685)
T Consensus 160 d~~r~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1139)
T COG1074 160 DFWRRRFYPLPAELAQLVAQLYKFPQATPLPALLLEIELARFGFPAYDLELLLPLHLIQKALIILQLKQAWLASLLELEA 239 (1139)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986304686899999999861043321256788867540445434011132213468999997665878888887777
Q ss_pred -------------HHH---HHHHHHH------------------H--------HCC----CCHHH--HHHCCC-----CH
Q ss_conf -------------999---9998667------------------5--------415----89646--121146-----53
Q gi|254780952|r 159 -------------HEV---IEKIDYW------------------Q--------NRG----WNPKD--IPQSSL-----TE 185 (685)
Q Consensus 159 -------------~~~---~~~i~~~------------------k--------~~~----~~~~~--~~~~~~-----~~ 185 (685)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1139)
T COG1074 240 LILGGLDKRASSLENLLKWIEKLSAWDNFERLDKALPTKLEKIFFQKKLKKKTKEAKLLARPPLHAEFEEIENRILLADE 319 (1139)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 65154045677788888788888740220334443116899877886300001211322368356899977535778767
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCH--HHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------89999999997557777530011100012454301206--889740122102532107751134688787
Q gi|254780952|r 186 ----------DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHP--HVLKKYHEKIPYIMVDEYQDINTPQYLLLR 253 (685)
Q Consensus 186 ----------~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~--~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~ 253 (685)
T Consensus 320 ~~~~~~~~~~l~~l~~~~~~~~~~~K~~r~~ldFdDl~~~~~~lL~~~~~~l~~~lr~~~~~iLIDEfQDT~~~Q~~Il~ 399 (1139)
T COG1074 320 LLRLAPRLRALLKLLEELIERYDAEKRQRNALDFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQWRILS 399 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 66657899999999999999999999885778989999999999845839999999847985887403459988999999
Q ss_pred HHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCH---
Q ss_conf 75111126788759999530688631133220134554205766406787612675146787520244434320101---
Q gi|254780952|r 254 LLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDK--- 330 (685)
Q Consensus 254 ~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k--- 330 (685)
T Consensus 400 ~l~~~~~~~-~~~lF~VGD~KQSIY~FRgAD~~~f~~a~~~~~~~~~~~L~~N~RS~~~vl~avN~lF~~~~~~~~~~~~ 478 (1139)
T COG1074 400 RLFAGFKAG-NRTLFLVGDPKQSIYRFRGADIFTFLEAASSEKAFARITLETNYRSTPELLNAVNALFKQAMFAYPGEID 478 (1139)
T ss_pred HHHHCCCCC-CCCEEEECCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 997256677-8507997473476553137897899998514333434204666678099999999999625540577778
Q ss_pred -----HHHHHCCCC-----CCCCE-EEEECC--------------CCCHHCCCCCHHHHHHHH--------HCCCCCHHH
Q ss_conf -----222210235-----56744-887315--------------531000000001366653--------113653031
Q gi|254780952|r 331 -----KLFTQRDCH-----DDAKV-SIHVSQ--------------SDNSELSTIIQEIINIQN--------TGMSLNNIA 377 (685)
Q Consensus 331 -----~l~~~~~~~-----~~~~v-~~~~~~--------------~~~~Ea~~Ia~~I~~l~~--------~g~~~~diA 377 (685)
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~a~~Ia~~L~~~~~~~~~~~~~r~i~~~DIa 558 (1139)
T COG1074 479 YDPVAELGARNGSPGSVNGEPLPALKFWEEEDDWTAPENEEDEREIADLEARQIAAWLRELIEGEAVLDGERPIRAGDIA 558 (1139)
T ss_pred CCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEE
T ss_conf 75165530367776666764310355422664455667840076799999999999999987377644677889842558
Q ss_pred HEECCCHHHHHHHHHHHCC-CCCEEEEC-CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1101001478899875202-33203203-310001121028999998846630245753046875465024668888788
Q gi|254780952|r 378 ILVRTSWQTRKFEDAFLEQ-EIPHKVIG-GSFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHA 455 (685)
Q Consensus 378 VL~Rtn~~~~~l~~~L~~~-gIP~~~~g-~~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a 455 (685)
T Consensus 559 ILVR~~~ea~~i~~aL~~~~~ipv~~~~r~~~~~~~e~~dll~lL~~il~P~~d~~L~a~L~Spifgl~~d~L~~l~~~- 637 (1139)
T COG1074 559 VLVRSRNEAAAIERALKKAGIIPVYLSNRSSLFETLEAQDLLALLRAILNPEDDLPLAALLRSPLFGLTEDDLAALAQD- 637 (1139)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCC-
T ss_conf 8954836799999999864699788578656315599999999999970854327899998275669999999998456-
Q ss_pred HHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 77398468999764104679977854334343335666531024660222333477709667885068845589888439
Q gi|254780952|r 456 SQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNL 535 (685)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l 535 (685)
T Consensus 638 ~~~~~~~~~~~~~~~~~-----------~~~~~~L~~~~~l~~~~~~~~~i~~~l~~~~~~e~-----~l~~~~~~~~~L 701 (1139)
T COG1074 638 EAEWEFLWENLRQLADI-----------WRFRGVLAMWRALAKITPLHDLIAERLLSTNLGER-----DLTNGLHAQELL 701 (1139)
T ss_pred CCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHH-----HCCCHHHHHHHH
T ss_conf 51156899999999899-----------99976999999998402388899999850332033-----124758899999
Q ss_pred HHHHHHHHHCC--C---HHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC-----C-----
Q ss_conf 99999983026--8---899999757654--22111545893699961134556698369846857668-----4-----
Q gi|254780952|r 536 RELLSIIEKHE--T---LEGFVLQAPLRE--NLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL-----P----- 598 (685)
Q Consensus 536 ~~l~~~~~~~~--s---l~~fl~~~~~~~--~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~-----P----- 598 (685)
T Consensus 702 ~~~~~~~~~~e~~~~~~L~~~i~~~~~~~~~~~~~l~~~~~~VrImTIHkSKGLEfPiVflp~~~~~~~~~~~~~~~~~~ 781 (1139)
T COG1074 702 QELLTRALSYEHGLLRWLERFIALIENNDEEQARRLESDRDLVRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLVYY 781 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEC
T ss_conf 99999877755303789999998654578677763157778589999853577889989975888888776654200104
Q ss_pred ------CHH---------------CCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
Q ss_conf ------221---------------2996787899999999985864116998313211257
Q gi|254780952|r 599 ------HQL---------------SINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHD 638 (685)
Q Consensus 599 ------~~~---------------~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~ 638 (685)
T Consensus 782 d~~~~~~~~~~~~~~~~~~~~~k~~~~~e~~~E~~RLLYVAlTRAk~~L~l~g~~~~~~~~ 842 (1139)
T COG1074 782 DGLRFELFDDLKSYPTPESQANKELAEEEALAEELRLLYVALTRAKEQLILIGAPSKREKS 842 (1139)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCC
T ss_conf 7653023424556664788999999999878899999999885554514898405644454