HHsearch alignment for GI: 254780952 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=97.09 E-value=0.00085 Score=44.81 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=53.5
Q ss_pred HCCCHHHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 62998899998538-----9896699958898835899999999998089997886762114799999999999851645
Q gi|254780952|r 28 KGLNAQQTHAVTIP-----DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~-----~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rFg-- 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARFG-- 270 (730)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC----CEEEEEECCCCCHHHHHHHHHHHHC--
T ss_conf 1038899999999997505666536767778858999999999999759----8799995653456999999999867--
Q ss_pred CCEEEEHHH
Q ss_conf 878961789
Q gi|254780952|r 103 IPRIQTFHS 111 (685)
Q Consensus 103 ~~~i~T~Hs 111 (685)
T Consensus 271 -~~v~vlHS 278 (730)
T COG1198 271 -AKVAVLHS 278 (730)
T ss_pred -CCHHHHCC
T ss_conf -87453146