HHsearch alignment for GI: 254780952 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].

Probab=96.02  E-value=0.018  Score=35.78  Aligned_cols=96  Identities=21%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             CCCCCCCCCCHHHHH--HCC---CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCHHHEEEEEECHH
Q ss_conf             321136832158887--629---9889999853898966999588988358999999999980-8999788676211479
Q gi|254780952|r   13 ILKGDFVPSCVPNYL--KGL---NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICH-KEIPPSKILAMTFTNQ   86 (685)
Q Consensus        13 ~~~~~~~~~~~~~~l--~~L---n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~-~~~~p~~Il~iTFT~~   86 (685)
T Consensus        13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTT-l----A~liA~~~~~~f~~~sAv~~gvk   87 (436)
T COG2256          13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTT-L----ARLIAGTTNAAFEALSAVTSGVK   87 (436)
T ss_pred             CHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCCEEEEECCCCCCHHH-H----HHHHHHHHCCCEEEECCCCCCHH
T ss_conf             767770977787855718661899438999964998605777899988889-9----99998761776699515234679


Q ss_pred             HHHHHHHHHHHHCCC---CCCEEEEHHHHH
Q ss_conf             999999999985164---587896178999
Q gi|254780952|r   87 AIQEMKNRLACYLGE---KIPRIQTFHSFC  113 (685)
Q Consensus        87 AA~el~~Ri~~~l~~---~~~~i~T~Hsf~  113 (685)
T Consensus        88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfn  117 (436)
T COG2256          88 DLREIIEEARKNRLLGRRTILFLDEIHRFN  117 (436)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEHHHHCC
T ss_conf             999999999998725883499872253337