HHsearch alignment for GI: 254780952 and conserved domain: COG3857

>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair].
Probab=99.96  E-value=1.5e-24  Score=187.23  Aligned_cols=553  Identities=16%  Similarity=0.220  Sum_probs=312.6

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC---CEEEEHHHHHHHHHHHHHHH
Q ss_conf             999588988358999999999980899978867621147999999999998516458---78961789999999984998
Q gi|254780952|r   47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI---PRIQTFHSFCASILRKHGEV  123 (685)
Q Consensus        47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~---~~i~T~Hsf~~~il~~~~~~  123 (685)
T Consensus         5 ~lyg~~gtgkT~~l~~e~~~~~~~g----kpviyIvP~q-~sFe~E~~~L~~~~~~g~~~i~V~~F~rLa~~i~~e~g~-   78 (1108)
T COG3857           5 LLYGRAGTGKTEILTEEIQEELEKG----KPVIYIVPSQ-MSFEKEKEILERLRQGGSFRIQVTRFKRLAYYILQETGG-   78 (1108)
T ss_pred             EEHHHCCCCHHHHHHHHHHHHHHCC----CCEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCC-
T ss_conf             6414202338899999999999749----8179983662-207878999707244870258998789889999986077-


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             48798980728999999999999973998--------5478989999998667541589646121146538999999999
Q gi|254780952|r  124 VGLPTDFAILDSAESRTIIKQLLKDLQID--------DKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYI  195 (685)
Q Consensus       124 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~iy~  195 (685)
T Consensus        79 ---~-Sk~~L~~~g~~Mlfyk~l~e~k~~l~vy~~~~~~~gF~~~l~el~~E~Kk~~lsve~L~~~~~~~~~~kl~dl~l  154 (1108)
T COG3857          79 ---P-SKTHLGDTGLSMLFYKILEELKKELKVYGSLADKSGFIEQLAELYTEFKKYQLSVEDLEDTADEQSLKKLHDLSL  154 (1108)
T ss_pred             ---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf             ---2-032221204899999999975788788886510225899999999999985488988744545144543443999


Q ss_pred             HHHHHHH--HHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-
Q ss_conf             7557777--5300111000124543012-06889740122102532107751134688787751111267887599995-
Q gi|254780952|r  196 QYVAYLQ--KTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVG-  271 (685)
Q Consensus       196 ~Y~~~l~--~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVG-  271 (685)
T Consensus       155 iyee~~~~l~~~~l~~ed~l~~lad~~~~s~~L-~~-----~~IvIDGFt~FS~~E~~vIe~L~~~~-----~~v~-I~l  222 (1108)
T COG3857         155 IYEEFEANLYNNYLDPEDSLSRLADKIKKSEQL-KQ-----AAIVIDGFTRFSPEEYRVIELLMKKC-----ARVT-IGL  222 (1108)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH-CC-----CEEEEECCCCCCHHHHHHHHHHHHCC-----CEEE-EEE
T ss_conf             999999988746688277899998726331655-46-----34998154447888999999998418-----5599-997


Q ss_pred             --C--------HHHHHHHCCCCCCHHHHHHHCCCC--C--CEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHC
Q ss_conf             --3--------068863113322013455420576--6--406787612-675146787520244434320101222210
Q gi|254780952|r  272 --D--------ENQCIYEWRGAQFSHILNFQKDFK--D--ANIIKLEQN-YRSTTHILNTANKLISHNKQRFDKKLFTQR  336 (685)
Q Consensus       272 --D--------~dQsIY~fRGA~~~~~~~f~~~f~--~--~~~i~L~~N-yRS~~~Ii~~an~li~~n~~r~~k~l~~~~  336 (685)
T Consensus       223 t~d~~~y~~~~~~~~if~---~s~~~l~~L~~~a~~~~i~~~~~~~~~~~~~~~~~L~~l~~~~~~-----~~--~--~~  290 (1108)
T COG3857         223 TADKKAYTKGSEEGNIFR---ASKKTLFRLLSKAEELNISIEQYNEVLYKFTKLQDLAHLENDFDQ-----LP--I--EI  290 (1108)
T ss_pred             ECCCHHHCCCCCCCHHHH---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH-----CC--C--HH
T ss_conf             337222105743223989---769999999988631466410777787764033668999866530-----44--2--11


Q ss_pred             CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECC-CHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCH
Q ss_conf             2355674488731553100000000136665311365303111010-01478899875202332032033-100011210
Q gi|254780952|r  337 DCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRT-SWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIR  414 (685)
Q Consensus       337 ~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rt-n~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~  414 (685)
T Consensus       291 ~~~~~~~i~I~qa~n~keEiEgvAr~Irq~i~eg~rYkDiaIL~gD~~aYe~~l~~If~~y~IP~fidk~~sM~~HPli~  370 (1108)
T COG3857         291 YAKDADHISIWQASNQKEEIEGVAREIRQKIREGYRYKDIAILLGDPAAYELTLKEIFKLYEIPFFIDKKRSMADHPLIE  370 (1108)
T ss_pred             HCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHH
T ss_conf             00575434267520559999999999999861487512043331786889999999998708873425421033296899


Q ss_pred             HHHHHHHHHHCCCHHHHHHHCCCCC-CCCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH-----HHHHHHHHHH
Q ss_conf             2899999884663024575304687-5465024-6688887887739846899976410467997-----7854334343
Q gi|254780952|r  415 DALAYFRLVCQEHRDEDFKRIINCP-KRGIGKE-SLHKIQYHASQHHISLLQASEKLIDSGQFRP-----QIRQSLQNFV  487 (685)
Q Consensus       415 ~lla~Lr~i~~p~d~~a~~~il~~p-~~gi~~~-~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~  487 (685)
T Consensus       371 fi~Sll~~~~~NW~~e~vl~llKt~~~f~~~~~~~iD~lEnYvl~~GI~G~~kw~k~f~~~~~~~~~~~~~lne~r~~il  450 (1108)
T COG3857         371 FIESLLDIKRYNWRYEPVLNLLKTDVLFDSNESEDIDLLENYVLAAGIKGKKKWTKLFTYEHFRKIENLERLNETRLDIL  450 (1108)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf             99999999984544658999997512445566477899999999936664044666755987604126999999998776


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHH---HHHCCCHHHHHC-------CCC---HHH----HHHHHHHHHHHHHHHHHC-CCHH
Q ss_conf             3356665310246602223334---777096678850-------688---455----898884399999998302-6889
Q gi|254780952|r  488 KDIRRWNNCSKKMDPAPIANMI---LEQSGYMAMWKN-------NKS---SEK----SQERLDNLRELLSIIEKH-ETLE  549 (685)
Q Consensus       488 ~~l~~~~~~~~~~~~~~l~~~i---~~~~~~~~~~~~-------~~~---~~~----~~~~l~~l~~l~~~~~~~-~sl~  549 (685)
T Consensus       451 ~pL~~l~~~sr~kt~~~~~~al~~~Le~~~v~e~l~~~~~e~~~~g~~~~a~~~~qvW~~~ielLeefv~vfg~e~l~l~  530 (1108)
T COG3857         451 HPLETLLKMSRAKTVKELAQALYEFLEEGRVPEQLQTERQEAELNGRHVEAEEHEQVWNALIELLEEFVEVFGDEKLSLE  530 (1108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             69999998778888999999999999961489999888877664016898999999999999999999998656733599


Q ss_pred             HHHHHHHHH---HHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHC----CCH-----------------
Q ss_conf             999975765---42211154589369996113455669836984685766842212----996-----------------
Q gi|254780952|r  550 GFVLQAPLR---ENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLS----INE-----------------  605 (685)
Q Consensus       550 ~fl~~~~~~---~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~----~~~-----------------  605 (685)
T Consensus       531 ~Fleil~~Gle~~kf~~iP~tlDqV~I~s~dlv~~~~~~~vYaiGmndg~fP~~~~~sglLSDedR~~ln~~~v~l~~~s  610 (1108)
T COG3857         531 LFLEILHIGLESLKFRLIPATLDQVSIGSYDLVKPHTKKFVYAIGMNDGVFPAPHKNSGLLSDEDREYLNQITVELSIAS  610 (1108)
T ss_pred             HHHHHHHHHHHHCEEEECCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH
T ss_conf             99999997665300243277556577501131232468769998247887888632257666677889875161047514


Q ss_pred             -HHHHHHHHHHHHHHHHHHHEEEEEECCC
Q ss_conf             -7878999999999858641169983132
Q gi|254780952|r  606 -GNVEGERRLAYVGITRAKKKCHLFYTIN  633 (685)
Q Consensus       606 -~~~eEErRL~YVA~TRAk~~L~l~~~~~  633 (685)
T Consensus       611 ~~n~~~~~f~~y~~~~~a~~~L~lSyp~~  639 (1108)
T COG3857         611 KENLKKNQFTVYSLVNSAKEELVLSYPIA  639 (1108)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEHH
T ss_conf             66787656899999853577189971244