HHsearch alignment for GI: 254780952 and conserved domain: COG3857
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair].
Probab=99.96 E-value=1.5e-24 Score=187.23 Aligned_cols=553 Identities=16% Similarity=0.220 Sum_probs=312.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC---CEEEEHHHHHHHHHHHHHHH
Q ss_conf 999588988358999999999980899978867621147999999999998516458---78961789999999984998
Q gi|254780952|r 47 LILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI---PRIQTFHSFCASILRKHGEV 123 (685)
Q Consensus 47 lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~---~~i~T~Hsf~~~il~~~~~~ 123 (685)
T Consensus 5 ~lyg~~gtgkT~~l~~e~~~~~~~g----kpviyIvP~q-~sFe~E~~~L~~~~~~g~~~i~V~~F~rLa~~i~~e~g~- 78 (1108)
T COG3857 5 LLYGRAGTGKTEILTEEIQEELEKG----KPVIYIVPSQ-MSFEKEKEILERLRQGGSFRIQVTRFKRLAYYILQETGG- 78 (1108)
T ss_pred EEHHHCCCCHHHHHHHHHHHHHHCC----CCEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCC-
T ss_conf 6414202338899999999999749----8179983662-207878999707244870258998789889999986077-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 48798980728999999999999973998--------5478989999998667541589646121146538999999999
Q gi|254780952|r 124 VGLPTDFAILDSAESRTIIKQLLKDLQID--------DKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTEDAEIPKAIYI 195 (685)
Q Consensus 124 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~iy~ 195 (685)
T Consensus 79 ---~-Sk~~L~~~g~~Mlfyk~l~e~k~~l~vy~~~~~~~gF~~~l~el~~E~Kk~~lsve~L~~~~~~~~~~kl~dl~l 154 (1108)
T COG3857 79 ---P-SKTHLGDTGLSMLFYKILEELKKELKVYGSLADKSGFIEQLAELYTEFKKYQLSVEDLEDTADEQSLKKLHDLSL 154 (1108)
T ss_pred ---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf ---2-032221204899999999975788788886510225899999999999985488988744545144543443999
Q ss_pred HHHHHHH--HHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-
Q ss_conf 7557777--5300111000124543012-06889740122102532107751134688787751111267887599995-
Q gi|254780952|r 196 QYVAYLQ--KTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVG- 271 (685)
Q Consensus 196 ~Y~~~l~--~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVG- 271 (685)
T Consensus 155 iyee~~~~l~~~~l~~ed~l~~lad~~~~s~~L-~~-----~~IvIDGFt~FS~~E~~vIe~L~~~~-----~~v~-I~l 222 (1108)
T COG3857 155 IYEEFEANLYNNYLDPEDSLSRLADKIKKSEQL-KQ-----AAIVIDGFTRFSPEEYRVIELLMKKC-----ARVT-IGL 222 (1108)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH-CC-----CEEEEECCCCCCHHHHHHHHHHHHCC-----CEEE-EEE
T ss_conf 999999988746688277899998726331655-46-----34998154447888999999998418-----5599-997
Q ss_pred --C--------HHHHHHHCCCCCCHHHHHHHCCCC--C--CEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHC
Q ss_conf --3--------068863113322013455420576--6--406787612-675146787520244434320101222210
Q gi|254780952|r 272 --D--------ENQCIYEWRGAQFSHILNFQKDFK--D--ANIIKLEQN-YRSTTHILNTANKLISHNKQRFDKKLFTQR 336 (685)
Q Consensus 272 --D--------~dQsIY~fRGA~~~~~~~f~~~f~--~--~~~i~L~~N-yRS~~~Ii~~an~li~~n~~r~~k~l~~~~ 336 (685)
T Consensus 223 t~d~~~y~~~~~~~~if~---~s~~~l~~L~~~a~~~~i~~~~~~~~~~~~~~~~~L~~l~~~~~~-----~~--~--~~ 290 (1108)
T COG3857 223 TADKKAYTKGSEEGNIFR---ASKKTLFRLLSKAEELNISIEQYNEVLYKFTKLQDLAHLENDFDQ-----LP--I--EI 290 (1108)
T ss_pred ECCCHHHCCCCCCCHHHH---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH-----CC--C--HH
T ss_conf 337222105743223989---769999999988631466410777787764033668999866530-----44--2--11
Q ss_pred CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECC-CHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCH
Q ss_conf 2355674488731553100000000136665311365303111010-01478899875202332032033-100011210
Q gi|254780952|r 337 DCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRT-SWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIR 414 (685)
Q Consensus 337 ~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rt-n~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~ 414 (685)
T Consensus 291 ~~~~~~~i~I~qa~n~keEiEgvAr~Irq~i~eg~rYkDiaIL~gD~~aYe~~l~~If~~y~IP~fidk~~sM~~HPli~ 370 (1108)
T COG3857 291 YAKDADHISIWQASNQKEEIEGVAREIRQKIREGYRYKDIAILLGDPAAYELTLKEIFKLYEIPFFIDKKRSMADHPLIE 370 (1108)
T ss_pred HCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHH
T ss_conf 00575434267520559999999999999861487512043331786889999999998708873425421033296899
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCC-CCCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH-----HHHHHHHHHH
Q ss_conf 2899999884663024575304687-5465024-6688887887739846899976410467997-----7854334343
Q gi|254780952|r 415 DALAYFRLVCQEHRDEDFKRIINCP-KRGIGKE-SLHKIQYHASQHHISLLQASEKLIDSGQFRP-----QIRQSLQNFV 487 (685)
Q Consensus 415 ~lla~Lr~i~~p~d~~a~~~il~~p-~~gi~~~-~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 487 (685)
T Consensus 371 fi~Sll~~~~~NW~~e~vl~llKt~~~f~~~~~~~iD~lEnYvl~~GI~G~~kw~k~f~~~~~~~~~~~~~lne~r~~il 450 (1108)
T COG3857 371 FIESLLDIKRYNWRYEPVLNLLKTDVLFDSNESEDIDLLENYVLAAGIKGKKKWTKLFTYEHFRKIENLERLNETRLDIL 450 (1108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99999999984544658999997512445566477899999999936664044666755987604126999999998776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH---HHHCCCHHHHHC-------CCC---HHH----HHHHHHHHHHHHHHHHHC-CCHH
Q ss_conf 3356665310246602223334---777096678850-------688---455----898884399999998302-6889
Q gi|254780952|r 488 KDIRRWNNCSKKMDPAPIANMI---LEQSGYMAMWKN-------NKS---SEK----SQERLDNLRELLSIIEKH-ETLE 549 (685)
Q Consensus 488 ~~l~~~~~~~~~~~~~~l~~~i---~~~~~~~~~~~~-------~~~---~~~----~~~~l~~l~~l~~~~~~~-~sl~ 549 (685)
T Consensus 451 ~pL~~l~~~sr~kt~~~~~~al~~~Le~~~v~e~l~~~~~e~~~~g~~~~a~~~~qvW~~~ielLeefv~vfg~e~l~l~ 530 (1108)
T COG3857 451 HPLETLLKMSRAKTVKELAQALYEFLEEGRVPEQLQTERQEAELNGRHVEAEEHEQVWNALIELLEEFVEVFGDEKLSLE 530 (1108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 69999998778888999999999999961489999888877664016898999999999999999999998656733599
Q ss_pred HHHHHHHHH---HHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHC----CCH-----------------
Q ss_conf 999975765---42211154589369996113455669836984685766842212----996-----------------
Q gi|254780952|r 550 GFVLQAPLR---ENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLS----INE----------------- 605 (685)
Q Consensus 550 ~fl~~~~~~---~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~----~~~----------------- 605 (685)
T Consensus 531 ~Fleil~~Gle~~kf~~iP~tlDqV~I~s~dlv~~~~~~~vYaiGmndg~fP~~~~~sglLSDedR~~ln~~~v~l~~~s 610 (1108)
T COG3857 531 LFLEILHIGLESLKFRLIPATLDQVSIGSYDLVKPHTKKFVYAIGMNDGVFPAPHKNSGLLSDEDREYLNQITVELSIAS 610 (1108)
T ss_pred HHHHHHHHHHHHCEEEECCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCH
T ss_conf 99999997665300243277556577501131232468769998247887888632257666677889875161047514
Q ss_pred -HHHHHHHHHHHHHHHHHHHEEEEEECCC
Q ss_conf -7878999999999858641169983132
Q gi|254780952|r 606 -GNVEGERRLAYVGITRAKKKCHLFYTIN 633 (685)
Q Consensus 606 -~~~eEErRL~YVA~TRAk~~L~l~~~~~ 633 (685)
T Consensus 611 ~~n~~~~~f~~y~~~~~a~~~L~lSyp~~ 639 (1108)
T COG3857 611 KENLKKNQFTVYSLVNSAKEELVLSYPIA 639 (1108)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEHH
T ss_conf 66787656899999853577189971244