HHsearch alignment for GI: 254780952 and conserved domain: COG3893
>COG3893 Inactivated superfamily I helicase [DNA replication, recombination, and repair].
Probab=98.59 E-value=7e-06 Score=59.14 Aligned_cols=300 Identities=15% Similarity=0.151 Sum_probs=145.9
Q ss_pred CEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHH
Q ss_conf 448873155310000000013666531136530311101001478899875202332032033-1000112102899999
Q gi|254780952|r 343 KVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFR 421 (685)
Q Consensus 343 ~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr 421 (685)
T Consensus 305 ~~~lieaa~e~dea~aiA~alr~aLe~~---~~aALVt~Dr~lARRV~~~L~R~gv~adds~G~pLs~t~~aal~~~~ie 381 (697)
T COG3893 305 FVTLIEAANERDEAYAIALALREALEAP---RTAALVTPDRNLARRVATELARFGVEADDSAGTPLSATPQAALLMLLIE 381 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 5469886531346799999999998483---3000016743789999999987087766556875432277799999999
Q ss_pred HHHCCCHHHHHHHCCCCCCCCCCHHHH-----HHHHHHHHHCC---CCHHHHHHHHHC-------CCCCCHHHHHHH---
Q ss_conf 884663024575304687546502466-----88887887739---846899976410-------467997785433---
Q gi|254780952|r 422 LVCQEHRDEDFKRIINCPKRGIGKESL-----HKIQYHASQHH---ISLLQASEKLID-------SGQFRPQIRQSL--- 483 (685)
Q Consensus 422 ~i~~p~d~~a~~~il~~p~~gi~~~~l-----~~l~~~a~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~l--- 483 (685)
T Consensus 382 ~v~rpgDPv~Ll~llKhPl~~fg~e~~~~~~aa~~LEl~alrg~~~s~~~~~L~~lle~rl~~~~d~~~~p~~~~~~~~~ 461 (697)
T COG3893 382 AVLRPGDPVALLALLKHPLARFGLEFLDLRDAANVLELAALRGGKVSPGYGELPALLEARLLGTSDDDLPPAWRAGLDPD 461 (697)
T ss_pred HHHCCCCHHHHHHHHHCCHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC
T ss_conf 98079976989999709412047712321075777889986078888316679999999851246666785202036942
Q ss_pred -----HHHHHHHHHHHHHCCCCC---CHHHHHH-----------HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----434333566653102466---0222333-----------477709667885068845589888439999999830
Q gi|254780952|r 484 -----QNFVKDIRRWNNCSKKMD---PAPIANM-----------ILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEK 544 (685)
Q Consensus 484 -----~~~~~~l~~~~~~~~~~~---~~~l~~~-----------i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~ 544 (685)
T Consensus 462 ~i~lA~~L~~~i~~A~~pl~~~~~~~~~~l~~~a~~t~~ale~l~~dd~g~l~~lw~~---eage~L~~l~~gl~~~~a~ 538 (697)
T COG3893 462 NIALARLLLQRISEAKAPLGAGHFEAIADLLALALDTVRALENLAIDDEGYLLALWLG---EAGEKLAALLRGLIEAGAQ 538 (697)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHCCCC
T ss_conf 4799999999988643563232277776399999999999986256621039999875---0557999999999861465
Q ss_pred CCCHHHH--HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH---HH------H-HHHH
Q ss_conf 2688999--997576542211154589369996113455669836984685766842212996---78------7-8999
Q gi|254780952|r 545 HETLEGF--VLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE---GN------V-EGER 612 (685)
Q Consensus 545 ~~sl~~f--l~~~~~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~---~~------~-eEEr 612 (685)
T Consensus 539 ls~~ew~diLd~L~~ge~vkp~~~~hprv~I~gaLEaRl~~~D~VVi~glNEg~wP~~~~nd~FlSr~mr~~lgL~pper 618 (697)
T COG3893 539 LSAPEWPDILDALVAGETVKPAPGTHPRVRIMGALEARLQRFDGVVIVGLNEGVWPSKTPNDLFLSRPMRKSLGLPPPER 618 (697)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHCHHHHHHCCCCCHHH
T ss_conf 67305789999861776236788888716883104665600352899557756488999651233458897459989678
Q ss_pred HH-----HHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 99-----9999858641169983132112576543335556888723314
Q gi|254780952|r 613 RL-----AYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLEL 657 (685)
Q Consensus 613 RL-----~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El 657 (685)
T Consensus 619 R~glqAhd~fqma~na~eVvLt~~~r~g---------~ap~v~SrwLeRL 659 (697)
T COG3893 619 RIGLQAHDYFQMAKNAPEVVLTRSERSG---------EAPAVSSRWLERL 659 (697)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEHHCCC---------CCCCHHHHHHHHH
T ss_conf 7546664899996599817986320158---------9860456899999