HHsearch alignment for GI: 254780952 and conserved domain: COG3893

>COG3893 Inactivated superfamily I helicase [DNA replication, recombination, and repair].
Probab=98.59  E-value=7e-06  Score=59.14  Aligned_cols=300  Identities=15%  Similarity=0.151  Sum_probs=145.9

Q ss_pred             CEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHH
Q ss_conf             448873155310000000013666531136530311101001478899875202332032033-1000112102899999
Q gi|254780952|r  343 KVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFR  421 (685)
Q Consensus       343 ~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr  421 (685)
T Consensus       305 ~~~lieaa~e~dea~aiA~alr~aLe~~---~~aALVt~Dr~lARRV~~~L~R~gv~adds~G~pLs~t~~aal~~~~ie  381 (697)
T COG3893         305 FVTLIEAANERDEAYAIALALREALEAP---RTAALVTPDRNLARRVATELARFGVEADDSAGTPLSATPQAALLMLLIE  381 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             5469886531346799999999998483---3000016743789999999987087766556875432277799999999


Q ss_pred             HHHCCCHHHHHHHCCCCCCCCCCHHHH-----HHHHHHHHHCC---CCHHHHHHHHHC-------CCCCCHHHHHHH---
Q ss_conf             884663024575304687546502466-----88887887739---846899976410-------467997785433---
Q gi|254780952|r  422 LVCQEHRDEDFKRIINCPKRGIGKESL-----HKIQYHASQHH---ISLLQASEKLID-------SGQFRPQIRQSL---  483 (685)
Q Consensus       422 ~i~~p~d~~a~~~il~~p~~gi~~~~l-----~~l~~~a~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~l---  483 (685)
T Consensus       382 ~v~rpgDPv~Ll~llKhPl~~fg~e~~~~~~aa~~LEl~alrg~~~s~~~~~L~~lle~rl~~~~d~~~~p~~~~~~~~~  461 (697)
T COG3893         382 AVLRPGDPVALLALLKHPLARFGLEFLDLRDAANVLELAALRGGKVSPGYGELPALLEARLLGTSDDDLPPAWRAGLDPD  461 (697)
T ss_pred             HHHCCCCHHHHHHHHHCCHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC
T ss_conf             98079976989999709412047712321075777889986078888316679999999851246666785202036942


Q ss_pred             -----HHHHHHHHHHHHHCCCCC---CHHHHHH-----------HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----434333566653102466---0222333-----------477709667885068845589888439999999830
Q gi|254780952|r  484 -----QNFVKDIRRWNNCSKKMD---PAPIANM-----------ILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEK  544 (685)
Q Consensus       484 -----~~~~~~l~~~~~~~~~~~---~~~l~~~-----------i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~  544 (685)
T Consensus       462 ~i~lA~~L~~~i~~A~~pl~~~~~~~~~~l~~~a~~t~~ale~l~~dd~g~l~~lw~~---eage~L~~l~~gl~~~~a~  538 (697)
T COG3893         462 NIALARLLLQRISEAKAPLGAGHFEAIADLLALALDTVRALENLAIDDEGYLLALWLG---EAGEKLAALLRGLIEAGAQ  538 (697)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHCCCC
T ss_conf             4799999999988643563232277776399999999999986256621039999875---0557999999999861465


Q ss_pred             CCCHHHH--HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH---HH------H-HHHH
Q ss_conf             2688999--997576542211154589369996113455669836984685766842212996---78------7-8999
Q gi|254780952|r  545 HETLEGF--VLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE---GN------V-EGER  612 (685)
Q Consensus       545 ~~sl~~f--l~~~~~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~---~~------~-eEEr  612 (685)
T Consensus       539 ls~~ew~diLd~L~~ge~vkp~~~~hprv~I~gaLEaRl~~~D~VVi~glNEg~wP~~~~nd~FlSr~mr~~lgL~pper  618 (697)
T COG3893         539 LSAPEWPDILDALVAGETVKPAPGTHPRVRIMGALEARLQRFDGVVIVGLNEGVWPSKTPNDLFLSRPMRKSLGLPPPER  618 (697)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHCHHHHHHCCCCCHHH
T ss_conf             67305789999861776236788888716883104665600352899557756488999651233458897459989678


Q ss_pred             HH-----HHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf             99-----9999858641169983132112576543335556888723314
Q gi|254780952|r  613 RL-----AYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLEL  657 (685)
Q Consensus       613 RL-----~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El  657 (685)
T Consensus       619 R~glqAhd~fqma~na~eVvLt~~~r~g---------~ap~v~SrwLeRL  659 (697)
T COG3893         619 RIGLQAHDYFQMAKNAPEVVLTRSERSG---------EAPAVSSRWLERL  659 (697)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEHHCCC---------CCCCHHHHHHHHH
T ss_conf             7546664899996599817986320158---------9860456899999