HHsearch alignment for GI: 254780952 and conserved domain: COG3973
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=99.96 E-value=6.3e-28 Score=210.41 Aligned_cols=345 Identities=20% Similarity=0.236 Sum_probs=171.9
Q ss_pred CCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf 2158887629988999985389896699958898835899999999998089--99788676211479999999999985
Q gi|254780952|r 21 SCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKE--IPPSKILAMTFTNQAIQEMKNRLACY 98 (685)
Q Consensus 21 ~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~--~~p~~Il~iTFT~~AA~el~~Ri~~~ 98 (685)
T Consensus 204 ~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN-~vFleYis~VLPe 282 (747)
T COG3973 204 AKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN-RVFLEYISRVLPE 282 (747)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHHHHCHH
T ss_conf 127789998617677787555787489955888871358899999998535662466865998283-8999999875544
Q ss_pred CCCCCCEEEEHHHHHHHHHHHH----------HHHCCCCC-------CCCC-----------------------------
Q ss_conf 1645878961789999999984----------99848798-------9807-----------------------------
Q gi|254780952|r 99 LGEKIPRIQTFHSFCASILRKH----------GEVVGLPT-------DFAI----------------------------- 132 (685)
Q Consensus 99 l~~~~~~i~T~Hsf~~~il~~~----------~~~~g~~~-------~~~i----------------------------- 132 (685)
T Consensus 283 LGe~~V~q~Tf~e~a~~iLg~~s~d~~lt~~~~e~~~~d~~~~~a~~a~k~~~~~~~~i~~~v~~is~e~~v~k~i~~~~ 362 (747)
T COG3973 283 LGEEGVVQETFEEWALAILGLKSEDLELTRRTLEKLLMDTDLGIAALAWKRSLLFGDAIDLDVVRISLEKKVGKDITGAG 362 (747)
T ss_pred HCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16686365049998887618897115789998765414507778777763025789999877654555322677766434
Q ss_pred ---CCHHHHHHHHHHHHHHCCC-------------CCCCCCHH---H---------HHHH-HHHHHH---CCCCHHH-HH
Q ss_conf ---2899999999999997399-------------85478989---9---------9999-866754---1589646-12
Q gi|254780952|r 133 ---LDSAESRTIIKQLLKDLQI-------------DDKDYDPH---E---------VIEK-IDYWQN---RGWNPKD-IP 179 (685)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---~---------~~~~-i~~~k~---~~~~~~~-~~ 179 (685)
T Consensus 363 ~~~~sk~eir~lF~e~l~~~~l~~r~~~i~~~~~~~ln~l~~~~~dk~~~~~~~~~~q~~~ed~v~rlr~~~~l~ee~~n 442 (747)
T COG3973 363 LQLNSKVEIRGLFTESLSESPLADRLHDIFAQDLLKLNDLSAAIRDKLDDLLDIAFRQKVYEDAVKRLRPQDVLPEEEEN 442 (747)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 77764788899999876329577788888631542012456666543446777998888899999863210357676665
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHH---------------------------------------HHCCCCCCCHHHHHHHC
Q ss_conf 114653899999999975577775---------------------------------------30011100012454301
Q gi|254780952|r 180 QSSLTEDAEIPKAIYIQYVAYLQK---------------------------------------TKSCDFGGLIIKTIEVL 220 (685)
Q Consensus 180 ~~~~~~~~~~~~~iy~~Y~~~l~~---------------------------------------~~~lDf~Dll~~a~~ll 220 (685)
T Consensus 443 ~~~----~~vaa~~y~e~~k~~~l~~~L~r~~~s~~~~~el~~g~~~~e~~r~~ge~~~~~~~d~~l~~dD~a~~lyi-- 516 (747)
T COG3973 443 SVR----INVAAANYDEAQKSLKLRVLLDRFFASTTPLTELRRGLADAEALRAIGEAKWREQIDKALLSDDVAPRLYI-- 516 (747)
T ss_pred HHC----CHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--
T ss_conf 531----22555346777404008899886531231678986478788999873035444321000002114356650--
Q ss_pred CCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCC-CC-HHHHHHHCCCCCC
Q ss_conf 206889740122102532107751134688787751111267887599995306886311332-20-1345542057664
Q gi|254780952|r 221 HHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGA-QF-SHILNFQKDFKDA 298 (685)
Q Consensus 221 ~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA-~~-~~~~~f~~~f~~~ 298 (685)
T Consensus 517 kd~ldG~k~~~~~kh~vIDeaqdys~~q~~~~r~l~~~------as~tivgd~gq~i~~~~~e~~~~e~~~~~fed-~~~ 589 (747)
T COG3973 517 KDPLDGIKTERRLKHTVIDEAQDYSRFQFTDNRTLAER------ASMTIVGDYGQVIYDEAQELSPMERMDVFFED-PSF 589 (747)
T ss_pred CCCCCCCCCCCCCCCEEECHHHHCCHHHHHHHHHHHHH------CCCEEECCCCCEEHHHHCCCCHHHHHHHHHHC-CCC
T ss_conf 13234665542033225513443340245887644320------36447624785532201226879998888728-970
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 06787612675146787520244434320101222210235567448873155310000000013666531136530311
Q gi|254780952|r 299 NIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAI 378 (685)
Q Consensus 299 ~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAV 378 (685)
T Consensus 590 e~v~l~~syrSt~eI~efan~~l~---d~~~~--~p~~rsge--~p~~i~~~~ne~l~qr~~~ii~~mkk~~~--etiaV 660 (747)
T COG3973 590 EYVGLIASYRSTAEIDEFANSLLP---DRFRI--HPLTRSGE--KPAVIMSVANEELVQRNPDIIPRMKKRGS--ETIAV 660 (747)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCC---CCCCC--CHHHCCCC--CCEEEECCCHHHHHHHHHHHHHHHHHCCC--CCEEE
T ss_conf 543245652585889999998632---77766--61211788--76221111339898750778888875278--71699
Q ss_pred EECCCHHHHH
Q ss_conf 1010014788
Q gi|254780952|r 379 LVRTSWQTRK 388 (685)
Q Consensus 379 L~Rtn~~~~~ 388 (685)
T Consensus 661 i~kt~~d~~~ 670 (747)
T COG3973 661 ICKTDHDCKA 670 (747)
T ss_pred ECCCHHHHHH
T ss_conf 7776789999