HHsearch alignment for GI: 254780952 and conserved domain: COG3973

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=99.96  E-value=6.3e-28  Score=210.41  Aligned_cols=345  Identities=20%  Similarity=0.236  Sum_probs=171.9

Q ss_pred             CCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCHHHEEEEEECHHHHHHHHHHHHHH
Q ss_conf             2158887629988999985389896699958898835899999999998089--99788676211479999999999985
Q gi|254780952|r   21 SCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKE--IPPSKILAMTFTNQAIQEMKNRLACY   98 (685)
Q Consensus        21 ~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~--~~p~~Il~iTFT~~AA~el~~Ri~~~   98 (685)
T Consensus       204 ~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN-~vFleYis~VLPe  282 (747)
T COG3973         204 AKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN-RVFLEYISRVLPE  282 (747)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHHHHCHH
T ss_conf             127789998617677787555787489955888871358899999998535662466865998283-8999999875544


Q ss_pred             CCCCCCEEEEHHHHHHHHHHHH----------HHHCCCCC-------CCCC-----------------------------
Q ss_conf             1645878961789999999984----------99848798-------9807-----------------------------
Q gi|254780952|r   99 LGEKIPRIQTFHSFCASILRKH----------GEVVGLPT-------DFAI-----------------------------  132 (685)
Q Consensus        99 l~~~~~~i~T~Hsf~~~il~~~----------~~~~g~~~-------~~~i-----------------------------  132 (685)
T Consensus       283 LGe~~V~q~Tf~e~a~~iLg~~s~d~~lt~~~~e~~~~d~~~~~a~~a~k~~~~~~~~i~~~v~~is~e~~v~k~i~~~~  362 (747)
T COG3973         283 LGEEGVVQETFEEWALAILGLKSEDLELTRRTLEKLLMDTDLGIAALAWKRSLLFGDAIDLDVVRISLEKKVGKDITGAG  362 (747)
T ss_pred             HCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             16686365049998887618897115789998765414507778777763025789999877654555322677766434


Q ss_pred             ---CCHHHHHHHHHHHHHHCCC-------------CCCCCCHH---H---------HHHH-HHHHHH---CCCCHHH-HH
Q ss_conf             ---2899999999999997399-------------85478989---9---------9999-866754---1589646-12
Q gi|254780952|r  133 ---LDSAESRTIIKQLLKDLQI-------------DDKDYDPH---E---------VIEK-IDYWQN---RGWNPKD-IP  179 (685)
Q Consensus       133 ---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---~---------~~~~-i~~~k~---~~~~~~~-~~  179 (685)
T Consensus       363 ~~~~sk~eir~lF~e~l~~~~l~~r~~~i~~~~~~~ln~l~~~~~dk~~~~~~~~~~q~~~ed~v~rlr~~~~l~ee~~n  442 (747)
T COG3973         363 LQLNSKVEIRGLFTESLSESPLADRLHDIFAQDLLKLNDLSAAIRDKLDDLLDIAFRQKVYEDAVKRLRPQDVLPEEEEN  442 (747)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             77764788899999876329577788888631542012456666543446777998888899999863210357676665


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHH---------------------------------------HHCCCCCCCHHHHHHHC
Q ss_conf             114653899999999975577775---------------------------------------30011100012454301
Q gi|254780952|r  180 QSSLTEDAEIPKAIYIQYVAYLQK---------------------------------------TKSCDFGGLIIKTIEVL  220 (685)
Q Consensus       180 ~~~~~~~~~~~~~iy~~Y~~~l~~---------------------------------------~~~lDf~Dll~~a~~ll  220 (685)
T Consensus       443 ~~~----~~vaa~~y~e~~k~~~l~~~L~r~~~s~~~~~el~~g~~~~e~~r~~ge~~~~~~~d~~l~~dD~a~~lyi--  516 (747)
T COG3973         443 SVR----INVAAANYDEAQKSLKLRVLLDRFFASTTPLTELRRGLADAEALRAIGEAKWREQIDKALLSDDVAPRLYI--  516 (747)
T ss_pred             HHC----CHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--
T ss_conf             531----22555346777404008899886531231678986478788999873035444321000002114356650--


Q ss_pred             CCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCC-CC-HHHHHHHCCCCCC
Q ss_conf             206889740122102532107751134688787751111267887599995306886311332-20-1345542057664
Q gi|254780952|r  221 HHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGA-QF-SHILNFQKDFKDA  298 (685)
Q Consensus       221 ~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA-~~-~~~~~f~~~f~~~  298 (685)
T Consensus       517 kd~ldG~k~~~~~kh~vIDeaqdys~~q~~~~r~l~~~------as~tivgd~gq~i~~~~~e~~~~e~~~~~fed-~~~  589 (747)
T COG3973         517 KDPLDGIKTERRLKHTVIDEAQDYSRFQFTDNRTLAER------ASMTIVGDYGQVIYDEAQELSPMERMDVFFED-PSF  589 (747)
T ss_pred             CCCCCCCCCCCCCCCEEECHHHHCCHHHHHHHHHHHHH------CCCEEECCCCCEEHHHHCCCCHHHHHHHHHHC-CCC
T ss_conf             13234665542033225513443340245887644320------36447624785532201226879998888728-970


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf             06787612675146787520244434320101222210235567448873155310000000013666531136530311
Q gi|254780952|r  299 NIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAI  378 (685)
Q Consensus       299 ~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAV  378 (685)
T Consensus       590 e~v~l~~syrSt~eI~efan~~l~---d~~~~--~p~~rsge--~p~~i~~~~ne~l~qr~~~ii~~mkk~~~--etiaV  660 (747)
T COG3973         590 EYVGLIASYRSTAEIDEFANSLLP---DRFRI--HPLTRSGE--KPAVIMSVANEELVQRNPDIIPRMKKRGS--ETIAV  660 (747)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHCC---CCCCC--CHHHCCCC--CCEEEECCCHHHHHHHHHHHHHHHHHCCC--CCEEE
T ss_conf             543245652585889999998632---77766--61211788--76221111339898750778888875278--71699


Q ss_pred             EECCCHHHHH
Q ss_conf             1010014788
Q gi|254780952|r  379 LVRTSWQTRK  388 (685)
Q Consensus       379 L~Rtn~~~~~  388 (685)
T Consensus       661 i~kt~~d~~~  670 (747)
T COG3973         661 ICKTDHDCKA  670 (747)
T ss_pred             ECCCHHHHHH
T ss_conf             7776789999