HHsearch alignment for GI: 254780952 and conserved domain: COG4096

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=96.49  E-value=0.025  Score=34.76  Aligned_cols=108  Identities=21%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             CCCHHHHHHHH------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC-
Q ss_conf             29988999985------38989669995889883589999999999808999788676211479999999999985164-
Q gi|254780952|r   29 GLNAQQTHAVT------IPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE-  101 (685)
Q Consensus        29 ~Ln~~Q~~av~------~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~-  101 (685)
T Consensus       165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~~  242 (875)
T COG4096         165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPFG  242 (875)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCC--HHHEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf             6227889999999999866874489997058885231999999999614--14305676126789999999999639886


Q ss_pred             ------------C--CCEEEEHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHH
Q ss_conf             ------------5--87896178999999998499848798---9807289999
Q gi|254780952|r  102 ------------K--IPRIQTFHSFCASILRKHGEVVGLPT---DFAILDSAES  138 (685)
Q Consensus       102 ------------~--~~~i~T~Hsf~~~il~~~~~~~g~~~---~~~i~~~~~~  138 (685)
T Consensus       243 ~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR  296 (875)
T COG4096         243 TKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR  296 (875)
T ss_pred             CCEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH
T ss_conf             401232014678630588760377875640654565567888312899606666