HHsearch alignment for GI: 254780952 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=96.49 E-value=0.025 Score=34.76 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCCHHHHHHHH------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC-
Q ss_conf 29988999985------38989669995889883589999999999808999788676211479999999999985164-
Q gi|254780952|r 29 GLNAQQTHAVT------IPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE- 101 (685)
Q Consensus 29 ~Ln~~Q~~av~------~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~- 101 (685)
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCC--HHHEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 6227889999999999866874489997058885231999999999614--14305676126789999999999639886
Q ss_pred ------------C--CCEEEEHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHH
Q ss_conf ------------5--87896178999999998499848798---9807289999
Q gi|254780952|r 102 ------------K--IPRIQTFHSFCASILRKHGEVVGLPT---DFAILDSAES 138 (685)
Q Consensus 102 ------------~--~~~i~T~Hsf~~~il~~~~~~~g~~~---~~~i~~~~~~ 138 (685)
T Consensus 243 ~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 243 TKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred CCEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH
T ss_conf 401232014678630588760377875640654565567888312899606666